-
1
-
-
84961216367
-
Global agricultural intensification during climate change: a role for genomics
-
Abberton, M., Batley, J., Bentley, A. et al. (2015) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnol. J. 14, 1095–1098.
-
(2015)
Plant Biotechnol. J.
, vol.14
, pp. 1095-1098
-
-
Abberton, M.1
Batley, J.2
Bentley, A.3
-
2
-
-
84959145150
-
The application of genomics and bioinformatics to accelerate crop improvement in a changing climate
-
Batley, J. and Edwards, D. (2016) The application of genomics and bioinformatics to accelerate crop improvement in a changing climate. Curr. Opin. Plant Biol. 30, 78–81.
-
(2016)
Curr. Opin. Plant Biol.
, vol.30
, pp. 78-81
-
-
Batley, J.1
Edwards, D.2
-
3
-
-
79961167445
-
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
-
Berkman, P.J., Manoli, S., McKenzie, M. et al. (2011) Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol. J. 9, 768–775.
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 768-775
-
-
Berkman, P.J.1
Manoli, S.2
McKenzie, M.3
-
4
-
-
84860842759
-
Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation
-
Berkman, P.J., Skarshewski, A., Manoli, S. et al. (2012) Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor. Appl. Genet. 124, 423–432.
-
(2012)
Theor. Appl. Genet.
, vol.124
, pp. 423-432
-
-
Berkman, P.J.1
Skarshewski, A.2
Manoli, S.3
-
5
-
-
84878012196
-
Dispersion and domestication shaped the genome of bread wheat
-
Berkman, P.J., Visendi, P., Lee, H.C. et al. (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnol. J. 11, 564–571.
-
(2013)
Plant Biotechnol. J.
, vol.11
, pp. 564-571
-
-
Berkman, P.J.1
Visendi, P.2
Lee, H.C.3
-
6
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger, A.M., Lohse, M. and Usadel, B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114–2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
7
-
-
84870260198
-
Analysis of the breadwheat genome using whole-genome shotgun sequencing
-
Brenchley, R., Spannagl, M., Pfeifer, M. et al. (2012) Analysis of the breadwheat genome using whole-genome shotgun sequencing. Nature, 491, 705–710.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
Spannagl, M.2
Pfeifer, M.3
-
8
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K. and Madden, T.L. (2009) BLAST+: architecture and applications. BMC Bioinformatics, 10, 421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
9
-
-
84877851614
-
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
-
Cavanagh, C.R., Chao, S., Wang, S. et al. (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc. Natl Acad. Sci. USA, 110, 8057–8062.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 8057-8062
-
-
Cavanagh, C.R.1
Chao, S.2
Wang, S.3
-
10
-
-
27144546673
-
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops)
-
Chantret, N., Salse, J., Sabot, F. et al. (2005) Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops). Plant Cell, 17, 1033–1045.
-
(2005)
Plant Cell
, vol.17
, pp. 1033-1045
-
-
Chantret, N.1
Salse, J.2
Sabot, F.3
-
11
-
-
84925513772
-
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
-
Chapman, J.A., Mascher, M., Buluç, A. et al. (2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol. 16, 1–17.
-
(2015)
Genome Biol.
, vol.16
, pp. 1-17
-
-
Chapman, J.A.1
Mascher, M.2
Buluç, A.3
-
12
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w(1118); iso-2; iso-3
-
Cingolani, P., Platts, A., Wang, L.L., Coon, M., Tung, N., Wang, L., Land, S.J., Lu, X. and Ruden, D.M. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w(1118); iso-2; iso-3. Fly, 6, 80–92.
-
(2012)
Fly
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang, L.L.3
Coon, M.4
Tung, N.5
Wang, L.6
Land, S.J.7
Lu, X.8
Ruden, D.M.9
-
13
-
-
84925537016
-
Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.)
-
Cros, D., Denis, M., Sanchez, L. et al. (2015) Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.). Theor. Appl. Genet. 128, 397–410.
-
(2015)
Theor. Appl. Genet.
, vol.128
, pp. 397-410
-
-
Cros, D.1
Denis, M.2
Sanchez, L.3
-
14
-
-
84890309817
-
Genomic prediction in CIMMYT maize and wheat breeding programs
-
Crossa, J., Perez, P., Hickey, J. et al. (2014) Genomic prediction in CIMMYT maize and wheat breeding programs. Heredity, 112, 48–60.
-
(2014)
Heredity
, vol.112
, pp. 48-60
-
-
Crossa, J.1
Perez, P.2
Hickey, J.3
-
15
-
-
34347399464
-
Genome plasticity a key factor in the success of polyploid wheat under domestication
-
Dubcovsky, J. and Dvorak, J. (2007) Genome plasticity a key factor in the success of polyploid wheat under domestication. Science, 316, 1862–1866.
-
(2007)
Science
, vol.316
, pp. 1862-1866
-
-
Dubcovsky, J.1
Dvorak, J.2
-
16
-
-
84863589392
-
Bread matters: a national initiative to profile the genetic diversity of Australian wheat
-
Edwards, D., Wilcox, S., Barrero, R.A. et al. (2012) Bread matters: a national initiative to profile the genetic diversity of Australian wheat. Plant Biotechnol. J. 10, 703–708.
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 703-708
-
-
Edwards, D.1
Wilcox, S.2
Barrero, R.A.3
-
17
-
-
84871906959
-
Accessing complex crop genomes with next-generation sequencing
-
Edwards, D., Batley, J. and Snowdon, R.J. (2013) Accessing complex crop genomes with next-generation sequencing. Theor. Appl. Genet. 126, 1–11.
-
(2013)
Theor. Appl. Genet.
, vol.126
, pp. 1-11
-
-
Edwards, D.1
Batley, J.2
Snowdon, R.J.3
-
18
-
-
84961213710
-
Towards plant pangenomics
-
Golicz, A.A., Batley, J. and Edwards, D. (2015a) Towards plant pangenomics. Plant Biotechnol. J. 14, 1099–1105.
-
(2015)
Plant Biotechnol. J.
, vol.14
, pp. 1099-1105
-
-
Golicz, A.A.1
Batley, J.2
Edwards, D.3
-
19
-
-
84925514063
-
Gene loss in the fungal canola pathogen Leptosphaeria maculans
-
Golicz, A.A., Martinez, P.A., Zander, M., Patel, D.A., Van De Wouw, A.P., Visendi, P., Fitzgerald, T.L., Edwards, D. and Batley, J. (2015b) Gene loss in the fungal canola pathogen Leptosphaeria maculans. Funct. Integr. Genomics, 15, 189–196.
-
(2015)
Funct. Integr. Genomics
, vol.15
, pp. 189-196
-
-
Golicz, A.A.1
Martinez, P.A.2
Zander, M.3
Patel, D.A.4
Van De Wouw, A.P.5
Visendi, P.6
Fitzgerald, T.L.7
Edwards, D.8
Batley, J.9
-
20
-
-
84995460932
-
The pangenome of an agronomically important crop plant Brassica oleracea
-
Golicz, A.A., Bayer, P.E., Barker, G.C. et al. (2016) The pangenome of an agronomically important crop plant Brassica oleracea. Nat. Commun. 7, 13390.
-
(2016)
Nat. Commun.
, vol.7
, pp. 13390
-
-
Golicz, A.A.1
Bayer, P.E.2
Barker, G.C.3
-
21
-
-
84905111430
-
Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
-
Gordon, S.P., Priest, H., Marais, D.L.D. et al. (2014) Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. Plant J. 79, 361–374.
-
(2014)
Plant J.
, vol.79
, pp. 361-374
-
-
Gordon, S.P.1
Priest, H.2
Marais, D.L.D.3
-
22
-
-
84960361852
-
Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated solanum tuberosum
-
Hardigan, M.A., Crisovan, E., Hamilton, J.P. et al. (2016) Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated solanum tuberosum. Plant Cell, 28, 388–405.
-
(2016)
Plant Cell
, vol.28
, pp. 388-405
-
-
Hardigan, M.A.1
Crisovan, E.2
Hamilton, J.P.3
-
23
-
-
0037062465
-
Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat
-
Huang, S., Sirikhachornkit, A., Su, X., Faris, J., Gill, B., Haselkorn, R. and Gornicki, P. (2002) Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc. Natl Acad. Sci. USA, 99, 8133–8138.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 8133-8138
-
-
Huang, S.1
Sirikhachornkit, A.2
Su, X.3
Faris, J.4
Gill, B.5
Haselkorn, R.6
Gornicki, P.7
-
24
-
-
84904382612
-
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
-
IWGSC (2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science, 345, 1251788.
-
(2014)
Science
, vol.345
, pp. 1251788
-
-
-
25
-
-
84939199382
-
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
-
Jordan, K.W., Wang, S., Lun, Y. et al. (2015) A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes. Genome Biol. 16, 48.
-
(2015)
Genome Biol.
, vol.16
, pp. 48
-
-
Jordan, K.W.1
Wang, S.2
Lun, Y.3
-
26
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka, J., Kapitonov, V.V., Pavlicek, A., Klonowski, P., Kohany, O. and Walichiewicz, J. (2005) Repbase update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462–467.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
27
-
-
79952614033
-
A novel hybrid gene prediction method employing protein multiple sequence alignments
-
Keller, O., Kollmar, M., Stanke, M. and Waack, S. (2011) A novel hybrid gene prediction method employing protein multiple sequence alignments. Bioinformatics, 27, 757–763.
-
(2011)
Bioinformatics
, vol.27
, pp. 757-763
-
-
Keller, O.1
Kollmar, M.2
Stanke, M.3
Waack, S.4
-
28
-
-
84876996918
-
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R. and Salzberg, S.L. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36.
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
29
-
-
84863596169
-
Single nucleotide polymorphism discovery from wheat next-generation sequence data
-
Lai, K., Duran, C., Berkman, P.J. et al. (2012) Single nucleotide polymorphism discovery from wheat next-generation sequence data. Plant Biotechnol. J. 10, 743–749.
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 743-749
-
-
Lai, K.1
Duran, C.2
Berkman, P.J.3
-
30
-
-
84919762086
-
Identification and characterisation of more than 4 million inter-varietal SNPs across the group 7 chromosomes of bread wheat
-
Lai, K., Lorenc, M.T., Lee, H. et al. (2015) Identification and characterisation of more than 4 million inter-varietal SNPs across the group 7 chromosomes of bread wheat. Plant Biotechnol. J. 13, 97–104.
-
(2015)
Plant Biotechnol. J.
, vol.13
, pp. 97-104
-
-
Lai, K.1
Lorenc, M.T.2
Lee, H.3
-
31
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B. and Salzberg, S.L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Meth. 9, 357–359.
-
(2012)
Nat. Meth.
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
32
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R. and 1000 Genome Project Data Processing Subgroup. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
33
-
-
84923019049
-
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
-
Li, Y.H., Zhou, G.Y., Ma, J.X. et al. (2014) De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits. Nat. Biotechnol. 32, 1045–1052.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1045-1052
-
-
Li, Y.H.1
Zhou, G.Y.2
Ma, J.X.3
-
34
-
-
84994410107
-
Chromosome-specific sequencing reveals an extensive dispensable genome component in wheat
-
Liu, M., Stiller, J., Holušová, K., Vrána, J., Liu, D., Doležel, J. and Liu, C. (2016) Chromosome-specific sequencing reveals an extensive dispensable genome component in wheat. Sci. Rep. 6, 36398.
-
(2016)
Sci. Rep.
, vol.6
, pp. 36398
-
-
Liu, M.1
Stiller, J.2
Holušová, K.3
Vrána, J.4
Liu, D.5
Doležel, J.6
Liu, C.7
-
35
-
-
84871914205
-
Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP
-
Lorenc, M.T., Hayashi, S., Stiller, J. et al. (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1, 370–382.
-
(2012)
Biology
, vol.1
, pp. 370-382
-
-
Lorenc, M.T.1
Hayashi, S.2
Stiller, J.3
-
36
-
-
84864147180
-
BEDOPS: high-performance genomic feature operations
-
Neph, S., Kuehn, M.S., Reynolds, A.P. et al. (2012) BEDOPS: high-performance genomic feature operations. Bioinformatics, 28, 1919–1920.
-
(2012)
Bioinformatics
, vol.28
, pp. 1919-1920
-
-
Neph, S.1
Kuehn, M.S.2
Reynolds, A.P.3
-
37
-
-
58549121169
-
Assessing the gene space in draft genomes
-
Parra, G., Bradnam, K., Ning, Z., Keane, T. and Korf, I. (2009) Assessing the gene space in draft genomes. Nucleic Acids Res. 37, 289–297.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 289-297
-
-
Parra, G.1
Bradnam, K.2
Ning, Z.3
Keane, T.4
Korf, I.5
-
38
-
-
84861760530
-
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
-
Peng, Y., Leung, H.C.M., Yiu, S.M. and Chin, F.Y.L. (2012) IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics, 28, 1420–1428.
-
(2012)
Bioinformatics
, vol.28
, pp. 1420-1428
-
-
Peng, Y.1
Leung, H.C.M.2
Yiu, S.M.3
Chin, F.Y.L.4
-
39
-
-
0001682461
-
Detection of genetics diversity in closely-related bread wheat using microsatellite markers
-
Plaschke, J., Ganal, M.W. and Roder, M.S. (1995) Detection of genetics diversity in closely-related bread wheat using microsatellite markers. Theor. Appl. Genet. 91, 1001–1007.
-
(1995)
Theor. Appl. Genet.
, vol.91
, pp. 1001-1007
-
-
Plaschke, J.1
Ganal, M.W.2
Roder, M.S.3
-
40
-
-
84878537188
-
Genomic selection in wheat breeding using genotyping-by-sequencing
-
Poland, J., Endelman, J., Dawson, J. et al. (2012) Genomic selection in wheat breeding using genotyping-by-sequencing. Plant Gen. 5, 103–113.
-
(2012)
Plant Gen.
, vol.5
, pp. 103-113
-
-
Poland, J.1
Endelman, J.2
Dawson, J.3
-
41
-
-
77955284781
-
Development of chromosome-specific BAC resources for genomics of bread wheat
-
Šafář, J., Šimková, H., Kubaláková, M., Číhalíková, J., Suchánková, P., Bartoš, J. and Doležel, J. (2010) Development of chromosome-specific BAC resources for genomics of bread wheat. Cytogenet Genome Res. 129, 211–223.
-
(2010)
Cytogenet Genome Res.
, vol.129
, pp. 211-223
-
-
Šafář, J.1
Šimková, H.2
Kubaláková, M.3
Číhalíková, J.4
Suchánková, P.5
Bartoš, J.6
Doležel, J.7
-
42
-
-
84925954982
-
Assessing genomic selection prediction accuracy in a dynamic barley breeding population
-
Sallam, A.H., Endelman, J.B., Jannink, J.L. and Smith, K.P. (2015) Assessing genomic selection prediction accuracy in a dynamic barley breeding population. Plant Genome, 8, 1–15.
-
(2015)
Plant Genome
, vol.8
, pp. 1-15
-
-
Sallam, A.H.1
Endelman, J.B.2
Jannink, J.L.3
Smith, K.P.4
-
43
-
-
84905107176
-
Structural variations in plant genomes
-
Saxena, R.K., Edwards, D. and Varshney, R.K. (2014) Structural variations in plant genomes. Brief. Funct. Genomics, 13, 296–307.
-
(2014)
Brief. Funct. Genomics
, vol.13
, pp. 296-307
-
-
Saxena, R.K.1
Edwards, D.2
Varshney, R.K.3
-
44
-
-
84965187491
-
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
-
Schatz, M.C., Maron, L.G., Stein, J.C. et al. (2014) Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol. 15, 1–16.
-
(2014)
Genome Biol.
, vol.15
, pp. 1-16
-
-
Schatz, M.C.1
Maron, L.G.2
Stein, J.C.3
-
45
-
-
0001833478
-
Nullisomic-tetrasomic combinations in hexaploid wheat
-
In, Riley, R., Lewis, K.R., eds)., Boston MA, Springer
-
Sears, E. (1966) Nullisomic-tetrasomic combinations in hexaploid wheat. In Chromosome Manipulations and Plant Genetics: The contributions to a symposium held during the Tenth International Botanical Congress Edinburgh 1964 (Riley, R. and Lewis, K.R., eds). Boston MA: Springer, pp. 29–45.
-
(1966)
Chromosome Manipulations and Plant Genetics: The contributions to a symposium held during the Tenth International Botanical Congress Edinburgh 1964
, pp. 29-45
-
-
Sears, E.1
-
46
-
-
0001397191
-
The history of Chinese Spring wheat
-
Sears, E.R. and Miller, T.E. (1985) The history of Chinese Spring wheat. Cereal Res. Commun. 13, 261–263.
-
(1985)
Cereal Res. Commun.
, vol.13
, pp. 261-263
-
-
Sears, E.R.1
Miller, T.E.2
-
47
-
-
34250104702
-
Location of β-amylase sequences in wheat and its relatives
-
Sharp, P.J., Kreis, M., Shewry, P.R. and Gale, M.D. (1988) Location of β-amylase sequences in wheat and its relatives. Theor. Appl. Genet. 75, 286–290.
-
(1988)
Theor. Appl. Genet.
, vol.75
, pp. 286-290
-
-
Sharp, P.J.1
Kreis, M.2
Shewry, P.R.3
Gale, M.D.4
-
48
-
-
84890407418
-
Genomic selection in forage breeding: accuracy and methods
-
Simeao Resende, R.M., Casler, M.D. and Vilela de Resende, M.D. (2014) Genomic selection in forage breeding: accuracy and methods. Crop Sci. 54, 143–156.
-
(2014)
Crop Sci.
, vol.54
, pp. 143-156
-
-
Simeao Resende, R.M.1
Casler, M.D.2
Vilela de Resende, M.D.3
-
49
-
-
66449136667
-
ABySS: a parallel assembler for short read sequence data
-
Simpson, J.T., Wong, K., Jackman, S.D., Schein, J.E., Jones, S.J.M. and Birol, I. (2009) ABySS: a parallel assembler for short read sequence data. Genome Res. 19, 1117–1123.
-
(2009)
Genome Res.
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.M.5
Birol, I.6
-
51
-
-
73649121258
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
-
Springer, N.M., Ying, K., Fu, Y. et al. (2009) Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet. 5, e1000734.
-
(2009)
PLoS Genet.
, vol.5
-
-
Springer, N.M.1
Ying, K.2
Fu, Y.3
-
52
-
-
33745612095
-
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
-
Suzuki, R. and Shimodaira, H. (2006) Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics, 22, 1540–1542.
-
(2006)
Bioinformatics
, vol.22
, pp. 1540-1542
-
-
Suzuki, R.1
Shimodaira, H.2
-
53
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial “pan-genome
-
Tettelin, H., Masignani, V., Cieslewicz, M.J. et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial “pan-genome”. Proc. Natl Acad. Sci. USA, 102, 13950–13955.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
-
54
-
-
84901296640
-
Next generation characterisation of cereal genomes for marker discovery
-
Visendi, P., Batley, J. and Edwards, D. (2013) Next generation characterisation of cereal genomes for marker discovery. Biology, 2, 1357–1377.
-
(2013)
Biology
, vol.2
, pp. 1357-1377
-
-
Visendi, P.1
Batley, J.2
Edwards, D.3
-
55
-
-
84904727598
-
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
-
Wang, S., Wong, D., Forrest, K. et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnol. J. 12, 787–796.
-
(2014)
Plant Biotechnol. J.
, vol.12
, pp. 787-796
-
-
Wang, S.1
Wong, D.2
Forrest, K.3
-
56
-
-
67650338287
-
Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat
-
Wanjugi, H., Coleman-Derr, D., Huo, N., Kianian, S.F., Luo, M.-C., Wu, J., Anderson, O. and Gu, Y.Q. (2009) Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat. Genome, 52, 576–587.
-
(2009)
Genome
, vol.52
, pp. 576-587
-
-
Wanjugi, H.1
Coleman-Derr, D.2
Huo, N.3
Kianian, S.F.4
Luo, M.-C.5
Wu, J.6
Anderson, O.7
Gu, Y.Q.8
-
57
-
-
84963722859
-
Evolution of plant genome architecture
-
Wendel, J.F., Jackson, S.A., Meyers, B.C. and Wing, R.A. (2016) Evolution of plant genome architecture. Genome Biol. 17, 37.
-
(2016)
Genome Biol.
, vol.17
, pp. 37
-
-
Wendel, J.F.1
Jackson, S.A.2
Meyers, B.C.3
Wing, R.A.4
-
58
-
-
84953792305
-
High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool
-
Winfield, M.O., Allen, A.M., Burridge, A.J. et al. (2015) High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool. Plant Biotechnol. J. 14, 1195–1206.
-
(2015)
Plant Biotechnol. J.
, vol.14
, pp. 1195-1206
-
-
Winfield, M.O.1
Allen, A.M.2
Burridge, A.J.3
-
59
-
-
84862936211
-
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
-
Xu, X., Liu, X., Ge, S. et al. (2012) Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat. Biotech. 30, 105–111.
-
(2012)
Nat. Biotech.
, vol.30
, pp. 105-111
-
-
Xu, X.1
Liu, X.2
Ge, S.3
-
60
-
-
84942371526
-
Exploring the rice dispensable genome using a metagenome-like assembly strategy
-
Yao, W., Li, G., Zhao, H., Wang, G., Lian, X. and Xie, W. (2015) Exploring the rice dispensable genome using a metagenome-like assembly strategy. Genome Biol. 16, 1–20.
-
(2015)
Genome Biol.
, vol.16
, pp. 1-20
-
-
Yao, W.1
Li, G.2
Zhao, H.3
Wang, G.4
Lian, X.5
Xie, W.6
-
61
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821–829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
62
-
-
84892475088
-
Genome-wide patterns of large-size presence/absence variants in sorghum
-
Zhang, L.-M., Luo, H., Liu, Z.-Q., Zhao, Y., Luo, J.-C., Hao, D.-Y. and Jing, H.-C. (2014) Genome-wide patterns of large-size presence/absence variants in sorghum. J. Integr. Plant Biol. 56, 24–37.
-
(2014)
J. Integr. Plant Biol.
, vol.56
, pp. 24-37
-
-
Zhang, L.-M.1
Luo, H.2
Liu, Z.-Q.3
Zhao, Y.4
Luo, J.-C.5
Hao, D.-Y.6
Jing, H.-C.7
-
63
-
-
84897951003
-
PanGP: a tool for quickly analyzing bacterial pan-genome profile
-
Zhao, Y., Jia, X., Yang, J., Ling, Y., Zhang, Z., Yu, J., Wu, J. and Xiao, J. (2014) PanGP: a tool for quickly analyzing bacterial pan-genome profile. Bioinformatics, 30, 1297–1299.
-
(2014)
Bioinformatics
, vol.30
, pp. 1297-1299
-
-
Zhao, Y.1
Jia, X.2
Yang, J.3
Ling, Y.4
Zhang, Z.5
Yu, J.6
Wu, J.7
Xiao, J.8
|