메뉴 건너뛰기




Volumn 124, Issue 3, 2012, Pages 423-432

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMY; CHROMOSOMES; GENETIC ENGINEERING;

EID: 84860842759     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1717-2     Document Type: Article
Times cited : (84)

References (41)
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • doi:10.1006/jmbi.1990.9999S0022283680799990
    • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3): 403-410. doi: 10. 1006/jmbi. 1990. 9999S0022283680799990.
    • (1990) J Mol Biol , vol.215 , Issue.3 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 3
    • 6044226955 scopus 로고    scopus 로고
    • Consistent over-estimation of gene number in complex plant genomes
    • doi:10.1016/j.pbi.2004.09.003
    • Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W (2004) Consistent over-estimation of gene number in complex plant genomes. Curr Opin Plant Biol 7(6): 732-736. doi: 10. 1016/j. pbi. 2004. 09. 003.
    • (2004) Curr Opin Plant Biol , vol.7 , Issue.6 , pp. 732-736
    • Bennetzen, J.L.1    Coleman, C.2    Liu, R.3    Ma, J.4    Ramakrishna, W.5
  • 5
    • 77957732862 scopus 로고    scopus 로고
    • Twenty-First century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture
    • doi:10.1104/pp.110.159541
    • Buell CR, Last RL (2010) Twenty-First century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture. Plant Physiol 154(2): 497-500. doi: 10. 1104/pp. 110. 159541.
    • (2010) Plant Physiol , vol.154 , Issue.2 , pp. 497-500
    • Buell, C.R.1    Last, R.L.2
  • 10
    • 34250076644 scopus 로고
    • Comparative RFLP maps of the homoeologous group-2 chromosomes of wheat, rye and barley
    • doi:10.1007/bf00225020
    • Devos KM, Millan T, Gale MD (1993) Comparative RFLP maps of the homoeologous group-2 chromosomes of wheat, rye and barley. Theor and Appl Genet 85(6): 784-792. doi: 10. 1007/bf00225020.
    • (1993) Theor and Appl Genet , vol.85 , Issue.6 , pp. 784-792
    • Devos, K.M.1    Millan, T.2    Gale, M.D.3
  • 11
    • 0001712515 scopus 로고
    • Structural Evolution of wheat chromosomes 4a, 5a, and 7b and its impact on recombination
    • Devos KM, Dubcovsky J, Dvorak J, Chinoy CN, Gale MD (1995) Structural Evolution of wheat chromosomes 4a, 5a, and 7b and its impact on recombination. Theor Appl Genet 91(2): 282-288.
    • (1995) Theor Appl Genet , vol.91 , Issue.2 , pp. 282-288
    • Devos, K.M.1    Dubcovsky, J.2    Dvorak, J.3    Chinoy, C.N.4    Gale, M.D.5
  • 15
    • 0035431405 scopus 로고    scopus 로고
    • A sense of self: the role of DNA sequence elimination in allopolyploidization
    • Eckardt NA (2001) A sense of self: the role of DNA sequence elimination in allopolyploidization. Plant Cell 13(8): 1699-1704.
    • (2001) Plant Cell , vol.13 , Issue.8 , pp. 1699-1704
    • Eckardt, N.A.1
  • 16
    • 71949131301 scopus 로고    scopus 로고
    • Plant genome sequencing: applications for crop improvement
    • doi:10.1111/j.1467-7652.2009.00459.x
    • Edwards D, Batley J (2010) Plant genome sequencing: applications for crop improvement. Plant Biotechnol J 8(1): 2-9. doi: 10. 1111/j. 1467-7652. 2009. 00459. x.
    • (2010) Plant Biotechnol J , vol.8 , Issue.1 , pp. 2-9
    • Edwards, D.1    Batley, J.2
  • 17
    • 0017716749 scopus 로고
    • Repeated sequence DNA relationships in 4 cereal genomes
    • Flavell RB, Rimpau J, Smith DB (1977) Repeated sequence DNA relationships in 4 cereal genomes. Chromosoma 63(3): 205-222.
    • (1977) Chromosoma , vol.63 , Issue.3 , pp. 205-222
    • Flavell, R.B.1    Rimpau, J.2    Smith, D.B.3
  • 18
    • 84856260308 scopus 로고    scopus 로고
    • Next generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content
    • doi: 10. 1111/j. 1365-313X. 2011. 04808. x (accepted)
    • Hernandez P, Martis M, Dorado G, Pfeifer M, Gálvez S, Schaaf S, Jouve N, Simková H, Valárik M, Doležel J, Mayer KF (2011) Next generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J. doi: 10. 1111/j. 1365-313X. 2011. 04808. x (accepted).
    • (2011) Plant J
    • Hernandez, P.1    Martis, M.2    Dorado, G.3    Pfeifer, M.4    Gálvez, S.5    Schaaf, S.6    Jouve, N.7    Simková, H.8    Valárik, M.9    Doležel, J.10    Mayer, K.F.11
  • 20
    • 0037062465 scopus 로고    scopus 로고
    • Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat
    • doi:10.1073/pnas.072223799
    • Huang S, Sirikhachornkit A, Su X, Faris J, Gill B, Haselkorn R, Gornicki P (2002) Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc Natl Acad Sci USA 99(12): 8133-8138. doi: 10. 1073/pnas. 072223799.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.12 , pp. 8133-8138
    • Huang, S.1    Sirikhachornkit, A.2    Su, X.3    Faris, J.4    Gill, B.5    Haselkorn, R.6    Gornicki, P.7
  • 21
    • 70450169667 scopus 로고    scopus 로고
    • De novo sequencing of plant genomes using second-generation technologies
    • doi:10.1093/bib/bbp039
    • Imelfort M, Edwards D (2009) De novo sequencing of plant genomes using second-generation technologies. Brief Bioinform 10(6): 609-618. doi: 10. 1093/bib/bbp039.
    • (2009) Brief Bioinform , vol.10 , Issue.6 , pp. 609-618
    • Imelfort, M.1    Edwards, D.2
  • 22
    • 0027175241 scopus 로고
    • Applications and statistics for multiple high-scoring segments in molecular sequences
    • Karlin S, Altschul SF (1993) Applications and statistics for multiple high-scoring segments in molecular sequences. Proceedings of the National Academy of Sci 90(12): 5873-5877.
    • (1993) Proceedings of the National Academy of Sci , vol.90 , Issue.12 , pp. 5873-5877
    • Karlin, S.1    Altschul, S.F.2
  • 23
    • 0023988195 scopus 로고
    • Genomic mapping by fingerprinting random clones: a mathematical analysis
    • doi: 10. 1016/0888-7543(88)90007-9
    • Lander ES, Waterman MS (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2(3): 231-239. doi: 10. 1016/0888-7543(88)90007-9. http://www. sciencedirect. com/science/article/pii/0888754388900079.
    • (1988) Genomics , vol.2 , Issue.3 , pp. 231-239
    • Lander, E.S.1    Waterman, M.S.2
  • 29
    • 0000902670 scopus 로고
    • Arm homoeology of wheat and rye chromosomes
    • doi:10.1139/g87-149
    • Naranjo T, Roca A, Goicoechea PG, Giraldez R (1987) Arm homoeology of wheat and rye chromosomes. Genome 29(6): 873-882. doi: 10. 1139/g87-149.
    • (1987) Genome , vol.29 , Issue.6 , pp. 873-882
    • Naranjo, T.1    Roca, A.2    Goicoechea, P.G.3    Giraldez, R.4
  • 30
    • 33750030513 scopus 로고    scopus 로고
    • Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B
    • doi:10.1111/j.1365-313X.2006.02891.x
    • Paux E, Roger D, Badaeva E, Gay G, Bernard M, Sourdille P, Feuillet C (2006) Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J 48(3): 463-474. doi: 10. 1111/j. 1365-313X. 2006. 02891. x.
    • (2006) Plant J , vol.48 , Issue.3 , pp. 463-474
    • Paux, E.1    Roger, D.2    Badaeva, E.3    Gay, G.4    Bernard, M.5    Sourdille, P.6    Feuillet, C.7
  • 31
    • 67449095888 scopus 로고    scopus 로고
    • Genome assembly reborn: recent computational challenges
    • doi:10.1093/bib/bbp026
    • Pop M (2009) Genome assembly reborn: recent computational challenges. Brief Bioinform 10(4): 354-366. doi: 10. 1093/bib/bbp026.
    • (2009) Brief Bioinform , vol.10 , Issue.4 , pp. 354-366
    • Pop, M.1
  • 39
    • 77956284088 scopus 로고    scopus 로고
    • Patching gaps in plant genomes results in gene movement and erosion of colinearity
    • doi: 10. 1101/gr. 107284. 110
    • Wicker T, Buchmann JP, Keller B (2010) Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Res. doi: 10. 1101/gr. 107284. 110.
    • (2010) Genome Res
    • Wicker, T.1    Buchmann, J.P.2    Keller, B.3
  • 40
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • doi:10.1101/gr.074492.107
    • Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18(5): 821-829. doi: 10. 1101/gr. 074492. 107.
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 41
    • 0034053725 scopus 로고    scopus 로고
    • A greedy algorithm for aligning DNA sequences
    • doi:10.1089/10665270050081478
    • Zhang Z, Schwartz S, Wagner L, Miller W (2000) A greedy algorithm for aligning DNA sequences. J Comput Biol 7(1-2): 203-214. doi: 10. 1089/10665270050081478.
    • (2000) J Comput Biol , vol.7 , Issue.1-2 , pp. 203-214
    • Zhang, Z.1    Schwartz, S.2    Wagner, L.3    Miller, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.