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Volumn 4, Issue , 2017, Pages

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives

(23)  Daily, Kenneth a   Ho Sui, Shannan J b   Schriml, Lynn M c   Dexheimer, Phillip J d   Salomonis, Nathan d   Schroll, Robin d   Bush, Stacy d   Keddache, Mehdi d   Mayhew, Christopher d   Lotia, Samad e   Perumal, Thanneer M a   Dang, Kristen a   Pantano, Lorena b   Pico, Alexander R e   Grassman, Elke d   Nordling, DIana d   Hide, Winston b,f,g   Hatzopoulos, Antonis K h   Malik, Punam c   Cancelas, Jose A d   more..


Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; CELL CULTURE TECHNIQUE; HUMAN; INDUCED PLURIPOTENT STEM CELL; PLURIPOTENT STEM CELL;

EID: 85016445988     PISSN: None     EISSN: 20524463     Source Type: Journal    
DOI: 10.1038/sdata.2017.30     Document Type: Article
Times cited : (53)

References (33)
  • 1
    • 84959330157 scopus 로고    scopus 로고
    • Pluripotent stem cells progressing to the clinic
    • Trounson, A., DeWitt, N. D. Pluripotent stem cells progressing to the clinic. Nat. Rev. Mol. Cell Biol. 17, 194-200 (2016).
    • (2016) Nat. Rev. Mol. Cell Biol. , vol.17 , pp. 194-200
    • Trounson, A.1    DeWitt, N.D.2
  • 2
    • 84942985344 scopus 로고    scopus 로고
    • Current status of pluripotent stem cells: Moving the first therapies to the clinic
    • Kimbrel, E. A., Lanza, R. Current status of pluripotent stem cells: Moving the first therapies to the clinic. Nat. Rev. Drug Discov. 14, 681-692 (2015).
    • (2015) Nat. Rev. Drug Discov. , vol.14 , pp. 681-692
    • Kimbrel, E.A.1    Lanza, R.2
  • 3
    • 84973094139 scopus 로고    scopus 로고
    • Gene correction in patient-specific iPSCs for therapy development and disease modeling
    • Jang, Y.-Y., Ye, Z. Gene correction in patient-specific iPSCs for therapy development and disease modeling. Hum. Genet. 135, 1041-1058 (2016).
    • (2016) Hum. Genet. , vol.135 , pp. 1041-1058
    • Jang, Y.-Y.1    Ye, Z.2
  • 4
    • 33747195353 scopus 로고    scopus 로고
    • Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures byDefined Factors
    • Takahashi, K., Yamanaka, S. Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures byDefined Factors. Cell 126, 663-676 (2006).
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 5
    • 84894159085 scopus 로고    scopus 로고
    • Perspectives for Induced Pluripotent Stem Cell Technology: New Insights into Human PhysiologyInvolved in Somatic Mosaicism
    • Nagata, N., Yamanaka, S. Perspectives for Induced Pluripotent Stem Cell Technology: New Insights Into Human PhysiologyInvolved in Somatic Mosaicism. Circ. Res. 114, 505-510 (2014).
    • (2014) Circ. Res. , vol.114 , pp. 505-510
    • Nagata, N.1    Yamanaka, S.2
  • 6
    • 0032491416 scopus 로고    scopus 로고
    • Embryonic Stem Cell Lines Derived from Human Blastocysts
    • Thomson, J. A. Embryonic Stem Cell Lines Derived from Human Blastocysts. Science 282, 1145-1147 (1998).
    • (1998) Science , vol.282 , pp. 1145-1147
    • Thomson, J.A.1
  • 7
    • 84992166098 scopus 로고    scopus 로고
    • Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell BiologyConsortium
    • Salomonis, N., et al. Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell BiologyConsortium. Stem Cell Reports 7, 110-125 (2016).
    • (2016) Stem Cell Reports , vol.7 , pp. 110-125
    • Salomonis, N.1
  • 8
    • 84885012223 scopus 로고    scopus 로고
    • Enabling transparent and collaborative computational analysis of 12 tumor types within the CancerGenome Atlas
    • Omberg, L., et al. Enabling transparent and collaborative computational analysis of 12 tumor types within The CancerGenome Atlas. Nat. Genet. 45, 1121-1126 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 1121-1126
    • Omberg, L.1
  • 9
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith, B., et al. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255 (2007).
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1251-1255
    • Smith, B.1
  • 10
    • 84892704081 scopus 로고    scopus 로고
    • NCBO Team. NCBO Technology: Powering semantically aware applications
    • Whetzel, P. L., NCBO Team. NCBO Technology: Powering semantically aware applications. J. Biomed. Semantics 4, S8 (2013).
    • (2013) J. Biomed. Semantics , vol.4 , pp. S8
    • Whetzel, P.L.1
  • 11
    • 84867746044 scopus 로고    scopus 로고
    • Extracellular Matrix Promotes Highly Efficient Cardiac Differentiation of Human Pluripotent Stem Cells: TheMatrix Sandwich Method
    • Zhang, J., et al. Extracellular Matrix Promotes Highly Efficient Cardiac Differentiation of Human Pluripotent Stem Cells: TheMatrix Sandwich Method. Circ. Res. 111, 1125-1136 (2012).
    • (2012) Circ. Res. , vol.111 , pp. 1125-1136
    • Zhang, J.1
  • 12
    • 62149125434 scopus 로고    scopus 로고
    • Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
    • Chambers, S. M., et al. Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat. Biotechnol. 27, 275-280 (2009).
    • (2009) Nat. Biotechnol. , vol.27 , pp. 275-280
    • Chambers, S.M.1
  • 13
    • 28644448149 scopus 로고    scopus 로고
    • Efficient differentiation of human embryonic stem cells to definitive endoderm
    • D'Amour, K. A., et al. Efficient differentiation of human embryonic stem cells to definitive endoderm. Nat. Biotechnol. 23, 1534-1541 (2005).
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1534-1541
    • D'Amour, K.A.1
  • 14
    • 84891771466 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: 2014 update
    • Karolchik, D., et al. The UCSC Genome Browser database: 2014 update. Nucleic Acids Res. 42, D764-D770 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D764-D770
    • Karolchik, D.1
  • 15
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D., et al. TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. GenomeBiol. 14, R36 (2013).
    • (2013) GenomeBiol , vol.14 , pp. R36
    • Kim, D.1
  • 16
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switchingduring cell differentiation
    • Trapnell, C., et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switchingduring cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 17
    • 79952709611 scopus 로고    scopus 로고
    • Improving RNA-Seq expression estimates by correcting forfragment bias
    • Roberts, A., Trapnell, C., Donaghey, J., Rinn, J. L., Pachter, L. Improving RNA-Seq expression estimates by correcting forfragment bias. Genome Biol. 12, R22 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R22
    • Roberts, A.1    Trapnell, C.2    Donaghey, J.3    Rinn, J.L.4    Pachter, L.5
  • 18
    • 84871946825 scopus 로고    scopus 로고
    • Streaming fragment assignment for real-time analysis of sequencing experiments
    • Roberts, A., Pachter, L. Streaming fragment assignment for real-time analysis of sequencing experiments. Nat. Methods 10, 71-73 (2012).
    • (2012) Nat. Methods , vol.10 , pp. 71-73
    • Roberts, A.1    Pachter, L.2
  • 19
    • 77954250511 scopus 로고    scopus 로고
    • AltAnalyze and DomainGraph: Analyzing and visualizing exon expression data
    • Emig, D., et al. AltAnalyze and DomainGraph: Analyzing and visualizing exon expression data. Nucleic Acids Res. 38, W755-W762 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. W755-W762
    • Emig, D.1
  • 20
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R., Hall, I. M. BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842(2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 21
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T., et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 22
    • 70449639806 scopus 로고    scopus 로고
    • MiRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression
    • Wang, W.-C., et al. miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression. BMCBioinformatics 10, 328 (2009).
    • (2009) BMCBioinformatics , vol.10 , pp. 328
    • Wang, W.-C.1
  • 23
    • 84891818318 scopus 로고    scopus 로고
    • MiRBase: Annotating high confidence microRNAs using deep sequencing data
    • Kozomara, A., Griffiths-Jones, S. miRBase: Annotating high confidence microRNAs using deep sequencing data. Nucleic AcidsRes. 42, D68-D73 (2014).
    • (2014) Nucleic AcidsRes. , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 24
    • 77951655424 scopus 로고    scopus 로고
    • SeqBuster a bioinformatic tool for the processing and analysis of small RNAs datasets, revealsubiquitous miRNA modifications in human embryonic cells
    • Pantano, L., Estivill, X., Marti, E. SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, revealsubiquitous miRNA modifications in human embryonic cells. Nucleic Acids Res. 38, e34 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. e34
    • Pantano, L.1    Estivill, X.2    Marti, E.3
  • 25
    • 84897548625 scopus 로고    scopus 로고
    • Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylationmicroarrays
    • Aryee, M. J., et al. Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylationmicroarrays. Bioinformatics 30, 1363-1369 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 1363-1369
    • Aryee, M.J.1
  • 26
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 27
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Danecek, P., et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2156-2158
    • Danecek, P.1
  • 28
    • 67849130563 scopus 로고    scopus 로고
    • ToppGene Suite for gene list enrichment analysis and candidate geneprioritization
    • Chen, J., Bardes, E. E., Aronow, B. J., Jegga, A. G. ToppGene Suite for gene list enrichment analysis and candidate geneprioritization. Nucleic Acids Res. 37, W305-W311 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. W305-W311
    • Chen, J.1    Bardes, E.E.2    Aronow, B.J.3    Jegga, A.G.4
  • 29
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
    • Purcell, S., et al. PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 31
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa, M. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28, 27-30 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1
  • 32
    • 84976870113 scopus 로고    scopus 로고
    • The Reactome pathway Knowledgebase
    • Fabregat, A., et al. The Reactome pathway Knowledgebase. Nucleic Acids Res. 44, D481-D487 (2016).
    • (2016) Nucleic Acids Res. , vol.44 , pp. D481-D487
    • Fabregat, A.1
  • 33
    • 84891753483 scopus 로고    scopus 로고
    • The Reactome pathway knowledgebase
    • Croft, D., et al. The Reactome pathway knowledgebase. Nucleic Acids Res. 42, D472-D477 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D472-D477
    • Croft, D.1


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