-
1
-
-
84959330157
-
Pluripotent stem cells progressing to the clinic
-
Trounson, A., DeWitt, N. D. Pluripotent stem cells progressing to the clinic. Nat. Rev. Mol. Cell Biol. 17, 194-200 (2016).
-
(2016)
Nat. Rev. Mol. Cell Biol.
, vol.17
, pp. 194-200
-
-
Trounson, A.1
DeWitt, N.D.2
-
2
-
-
84942985344
-
Current status of pluripotent stem cells: Moving the first therapies to the clinic
-
Kimbrel, E. A., Lanza, R. Current status of pluripotent stem cells: Moving the first therapies to the clinic. Nat. Rev. Drug Discov. 14, 681-692 (2015).
-
(2015)
Nat. Rev. Drug Discov.
, vol.14
, pp. 681-692
-
-
Kimbrel, E.A.1
Lanza, R.2
-
3
-
-
84973094139
-
Gene correction in patient-specific iPSCs for therapy development and disease modeling
-
Jang, Y.-Y., Ye, Z. Gene correction in patient-specific iPSCs for therapy development and disease modeling. Hum. Genet. 135, 1041-1058 (2016).
-
(2016)
Hum. Genet.
, vol.135
, pp. 1041-1058
-
-
Jang, Y.-Y.1
Ye, Z.2
-
4
-
-
33747195353
-
Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures byDefined Factors
-
Takahashi, K., Yamanaka, S. Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures byDefined Factors. Cell 126, 663-676 (2006).
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
5
-
-
84894159085
-
Perspectives for Induced Pluripotent Stem Cell Technology: New Insights into Human PhysiologyInvolved in Somatic Mosaicism
-
Nagata, N., Yamanaka, S. Perspectives for Induced Pluripotent Stem Cell Technology: New Insights Into Human PhysiologyInvolved in Somatic Mosaicism. Circ. Res. 114, 505-510 (2014).
-
(2014)
Circ. Res.
, vol.114
, pp. 505-510
-
-
Nagata, N.1
Yamanaka, S.2
-
6
-
-
0032491416
-
Embryonic Stem Cell Lines Derived from Human Blastocysts
-
Thomson, J. A. Embryonic Stem Cell Lines Derived from Human Blastocysts. Science 282, 1145-1147 (1998).
-
(1998)
Science
, vol.282
, pp. 1145-1147
-
-
Thomson, J.A.1
-
7
-
-
84992166098
-
Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell BiologyConsortium
-
Salomonis, N., et al. Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell BiologyConsortium. Stem Cell Reports 7, 110-125 (2016).
-
(2016)
Stem Cell Reports
, vol.7
, pp. 110-125
-
-
Salomonis, N.1
-
8
-
-
84885012223
-
Enabling transparent and collaborative computational analysis of 12 tumor types within the CancerGenome Atlas
-
Omberg, L., et al. Enabling transparent and collaborative computational analysis of 12 tumor types within The CancerGenome Atlas. Nat. Genet. 45, 1121-1126 (2013).
-
(2013)
Nat. Genet.
, vol.45
, pp. 1121-1126
-
-
Omberg, L.1
-
9
-
-
35948989284
-
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith, B., et al. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255 (2007).
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
-
10
-
-
84892704081
-
NCBO Team. NCBO Technology: Powering semantically aware applications
-
Whetzel, P. L., NCBO Team. NCBO Technology: Powering semantically aware applications. J. Biomed. Semantics 4, S8 (2013).
-
(2013)
J. Biomed. Semantics
, vol.4
, pp. S8
-
-
Whetzel, P.L.1
-
11
-
-
84867746044
-
Extracellular Matrix Promotes Highly Efficient Cardiac Differentiation of Human Pluripotent Stem Cells: TheMatrix Sandwich Method
-
Zhang, J., et al. Extracellular Matrix Promotes Highly Efficient Cardiac Differentiation of Human Pluripotent Stem Cells: TheMatrix Sandwich Method. Circ. Res. 111, 1125-1136 (2012).
-
(2012)
Circ. Res.
, vol.111
, pp. 1125-1136
-
-
Zhang, J.1
-
12
-
-
62149125434
-
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
-
Chambers, S. M., et al. Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat. Biotechnol. 27, 275-280 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 275-280
-
-
Chambers, S.M.1
-
13
-
-
28644448149
-
Efficient differentiation of human embryonic stem cells to definitive endoderm
-
D'Amour, K. A., et al. Efficient differentiation of human embryonic stem cells to definitive endoderm. Nat. Biotechnol. 23, 1534-1541 (2005).
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1534-1541
-
-
D'Amour, K.A.1
-
14
-
-
84891771466
-
The UCSC Genome Browser database: 2014 update
-
Karolchik, D., et al. The UCSC Genome Browser database: 2014 update. Nucleic Acids Res. 42, D764-D770 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D764-D770
-
-
Karolchik, D.1
-
15
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D., et al. TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. GenomeBiol. 14, R36 (2013).
-
(2013)
GenomeBiol
, vol.14
, pp. R36
-
-
Kim, D.1
-
16
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switchingduring cell differentiation
-
Trapnell, C., et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switchingduring cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
17
-
-
79952709611
-
Improving RNA-Seq expression estimates by correcting forfragment bias
-
Roberts, A., Trapnell, C., Donaghey, J., Rinn, J. L., Pachter, L. Improving RNA-Seq expression estimates by correcting forfragment bias. Genome Biol. 12, R22 (2011).
-
(2011)
Genome Biol.
, vol.12
, pp. R22
-
-
Roberts, A.1
Trapnell, C.2
Donaghey, J.3
Rinn, J.L.4
Pachter, L.5
-
18
-
-
84871946825
-
Streaming fragment assignment for real-time analysis of sequencing experiments
-
Roberts, A., Pachter, L. Streaming fragment assignment for real-time analysis of sequencing experiments. Nat. Methods 10, 71-73 (2012).
-
(2012)
Nat. Methods
, vol.10
, pp. 71-73
-
-
Roberts, A.1
Pachter, L.2
-
19
-
-
77954250511
-
AltAnalyze and DomainGraph: Analyzing and visualizing exon expression data
-
Emig, D., et al. AltAnalyze and DomainGraph: Analyzing and visualizing exon expression data. Nucleic Acids Res. 38, W755-W762 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W755-W762
-
-
Emig, D.1
-
20
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R., Hall, I. M. BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842(2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
21
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T., et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
22
-
-
70449639806
-
MiRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression
-
Wang, W.-C., et al. miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression. BMCBioinformatics 10, 328 (2009).
-
(2009)
BMCBioinformatics
, vol.10
, pp. 328
-
-
Wang, W.-C.1
-
23
-
-
84891818318
-
MiRBase: Annotating high confidence microRNAs using deep sequencing data
-
Kozomara, A., Griffiths-Jones, S. miRBase: Annotating high confidence microRNAs using deep sequencing data. Nucleic AcidsRes. 42, D68-D73 (2014).
-
(2014)
Nucleic AcidsRes.
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
24
-
-
77951655424
-
SeqBuster a bioinformatic tool for the processing and analysis of small RNAs datasets, revealsubiquitous miRNA modifications in human embryonic cells
-
Pantano, L., Estivill, X., Marti, E. SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, revealsubiquitous miRNA modifications in human embryonic cells. Nucleic Acids Res. 38, e34 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e34
-
-
Pantano, L.1
Estivill, X.2
Marti, E.3
-
25
-
-
84897548625
-
Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylationmicroarrays
-
Aryee, M. J., et al. Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylationmicroarrays. Bioinformatics 30, 1363-1369 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 1363-1369
-
-
Aryee, M.J.1
-
26
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
27
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P., et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
28
-
-
67849130563
-
ToppGene Suite for gene list enrichment analysis and candidate geneprioritization
-
Chen, J., Bardes, E. E., Aronow, B. J., Jegga, A. G. ToppGene Suite for gene list enrichment analysis and candidate geneprioritization. Nucleic Acids Res. 37, W305-W311 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W305-W311
-
-
Chen, J.1
Bardes, E.E.2
Aronow, B.J.3
Jegga, A.G.4
-
29
-
-
34548292504
-
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
-
Purcell, S., et al. PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. Am. J. Hum. Genet. 81, 559-575 (2007).
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
-
30
-
-
84976907502
-
KEGG as a reference resource for gene and proteinannotation
-
Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., Tanabe, M. KEGG as a reference resource for gene and proteinannotation. Nucleic Acids Res. 44, D457-D462 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D457-D462
-
-
Kanehisa, M.1
Sato, Y.2
Kawashima, M.3
Furumichi, M.4
Tanabe, M.5
-
31
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa, M. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28, 27-30 (2000).
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
-
32
-
-
84976870113
-
The Reactome pathway Knowledgebase
-
Fabregat, A., et al. The Reactome pathway Knowledgebase. Nucleic Acids Res. 44, D481-D487 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D481-D487
-
-
Fabregat, A.1
-
33
-
-
84891753483
-
The Reactome pathway knowledgebase
-
Croft, D., et al. The Reactome pathway knowledgebase. Nucleic Acids Res. 42, D472-D477 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D472-D477
-
-
Croft, D.1
|