Enabling transparent and collaborative computational analysis of 12 tumor types within the Cancer Genome Atlas

Nature Genetics

Volumn 45, Issue 10, 2013, Pages 1121-1126

  Omberg, Larsson ^a   Ellrott, Kyle ^b   Yuan, Yuan ^c,d   Kandoth, Cyriac ^e   Wong, Chris ^b   Kellen, Michael R ^a   Friend, Stephen H ^a   Stuart, Josh ^b   Liang, Han ^c,d   Margolin, Adam A ^a  

^a SAGE BIONETWORKS   (United States)

^b University of California Santa Cruz   (United States)

^c UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

^d BAYLOR COLLEGE OF MEDICINE   (United States)

^e WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CANCER GENETICS; CANCER PATIENT; CANCER RESEARCH; CANCER SURVIVAL; CONTROLLED VOCABULARY; DATA PROCESSING; GENE MUTATION; GENETIC ANALYSIS; GENOME; HUMAN; META ANALYSIS (TOPIC); PILOT STUDY; PRIORITY JOURNAL; PUBLICATION; REVIEW; SCIENTIST; STANDARDIZATION; SYNAPSE;

COOPERATIVE BEHAVIOR; GENOME; HUMANS; NEOPLASMS; REPRODUCIBILITY OF RESULTS;

EID: 84885012223     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.2761     Document Type: Review

References (23)

1. Edgar, R., Domrachev, M. & Lash, A.E. Nucleic Acids Res. 30, 207-210 (2002).
2. Mailman, M.D. et al. Nat. Genet. 39, 1181-1186 (2007).
3. Goecks, J., Nekrutenko, A. & Taylor, J. Genome Biol. 11, R86 (2010).
4. Wolstencroft, K., et al. Nucleic Acids Res. 41, W557-W561 (2013).
5. Derry, J.M.J. et al. Nat. Genet. 44, 127-130 (2012).
6. Cancer Genome Atlas Research Network. Nature 474, 609-615 (2011).
7. Cancer Genome Atlas Research Network. N. Engl. J. Med. 368, 2059-2074 (2013).
8. Cancer Genome Atlas Research Network. Nature 497, 67-73 (2013).
9. Cancer Genome Atlas Network. Nature 490, 61-70 (2012).
10. Cancer Genome Atlas Research Network. Nature 489, 519-525 (2012).
11. Cancer Genome Atlas Research Network. Nature 455, 1061-1068 (2008).
12. Cancer Genome Atlas Network. Nature 487, 330-337 (2012).
13. Dees, N.D. et al. Genome Res. 22, 1589-1598 (2012).
14. Bilal, E. et al. PLOS Comput. Biol. 9, e1003047 (2013).
15. Shi, L. et al. Nat. Biotechnol. 28, 827-838 (2010).
16. Margolin, A.A. et al. Sci. Transl. Med. 5, 181re1 (2013).
17. Saito, R. et al. Nat. Methods 9, 1069-1076 (2012).
18. Kelder, T. et al. PLoS ONE 4, e6447 (2009).
19. Benkler, Y. Yale Law J. 114, 273-358 (2005).
20. Kolata, G. New York Times (12 August 2010).
21. Zack, T.I. et al. Nat. Genet. doi:10.1038/ng.2760 (26 October 2013).
22. Lawrence, M.S. et al Nature 499, 214-218 (2013).
23. Li, J. et al. Nat. Meth. doi:10.1038/nmeth.2650 (15 October 2013).