메뉴 건너뛰기




Volumn 353, Issue 6304, 2016, Pages

Continuous genetic recording with self-targeting CRISPR-Cas in human cells

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; DNA ENDONUCLEASE CAS9; DOUBLE STRANDED DNA; GUIDE RNA; RED FLUORESCENT PROTEIN; SELF TARGETING GUIDE RNA; TUMOR NECROSIS FACTOR; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; CAS9 ENDONUCLEASE STREPTOCOCCUS PYOGENES; DNA; ENDONUCLEASE;

EID: 85015591616     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.aag0511     Document Type: Article
Times cited : (160)

References (38)
  • 1
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • pmid: 10659857
    • T. S. Gardner, C. R. Cantor, J. J. Collins, Construction of a genetic toggle switch in Escherichia coli. Nature 403, 339-342 (2000). doi: 10.1038/35002131; pmid: 10659857
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 2
    • 84897482912 scopus 로고    scopus 로고
    • Programmable bacteria detect and record an environmental signal in the mammalian gut
    • pmid: 24639514
    • J. W. Kotula et al., Programmable bacteria detect and record an environmental signal in the mammalian gut. Proc. Natl. Acad. Sci. U.S.A. 111, 4838-4843 (2014). doi: 10.1073/pnas.1321321111; pmid: 24639514
    • (2014) Proc. Natl. Acad. Sci. U.S.A. , vol.111 , pp. 4838-4843
    • Kotula, J.W.1
  • 3
    • 34548856538 scopus 로고    scopus 로고
    • Rational design of memory in eukaryotic cells
    • pmid: 17875664
    • C. M. Ajo-Franklin et al., Rational design of memory in eukaryotic cells. Genes Dev. 21, 2271-2276 (2007). doi: 10.1101/gad.1586107; pmid: 17875664
    • (2007) Genes Dev. , vol.21 , pp. 2271-2276
    • Ajo-Franklin, C.M.1
  • 4
    • 66349125024 scopus 로고    scopus 로고
    • Synthetic gene networks that count
    • pmid: 19478183
    • A. E. Friedland et al., Synthetic gene networks that count. Science 324, 1199-1202 (2009). doi: 10.1126/science.1172005; pmid: 19478183
    • (2009) Science , vol.324 , pp. 1199-1202
    • Friedland, A.E.1
  • 5
    • 84875230351 scopus 로고    scopus 로고
    • Synthetic circuits integrating logic and memory in living cells
    • pmid: 23396014
    • P. Siuti, J. Yazbek, T. K. Lu, Synthetic circuits integrating logic and memory in living cells. Nat. Biotechnol. 31, 448-452 (2013). doi: 10.1038/nbt.2510; pmid: 23396014
    • (2013) Nat. Biotechnol. , vol.31 , pp. 448-452
    • Siuti, P.1    Yazbek, J.2    Lu, T.K.3
  • 6
    • 84910594404 scopus 로고    scopus 로고
    • Synthetic biology. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations
    • pmid: 25395541
    • F. Farzadfard, T. K. Lu, Synthetic biology. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations. Science 346, 1256272 (2014).; pmid: 25395541
    • (2014) Science , vol.346 , pp. 1256272
    • Farzadfard, F.1    Lu, T.K.2
  • 8
    • 84974576984 scopus 로고    scopus 로고
    • Whole organism lineage tracing by combinatorial and cumulative genome editing
    • A. McKenna et al., Whole organism lineage tracing by combinatorial and cumulative genome editing. Science 353, aaf7907 (2016).
    • (2016) Science , vol.353 , pp. aaf7907
    • McKenna, A.1
  • 10
    • 84876567971 scopus 로고    scopus 로고
    • RNA-programmed genome editing in human cells
    • pmid: 23386978
    • M. Jinek et al., RNA-programmed genome editing in human cells. eLife 2, e00471-e00471 (2013). doi: 10.7554/eLife.00471; pmid: 23386978
    • (2013) ELife , vol.2 , pp. e00471-e00471
    • Jinek, M.1
  • 11
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • pmid: 23287718
    • L. Cong et al., Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819-823 (2013). doi: 10.1126/science.1231143; pmid: 23287718
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 12
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • pmid: 23287722
    • P. Mali et al., RNA-guided human genome engineering via Cas9. Science 339, 823-826 (2013). doi: 10.1126/science.1232033; pmid: 23287722
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1
  • 13
    • 84901195977 scopus 로고    scopus 로고
    • Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells
    • pmid: 24837679
    • L. Nissim, S. D. Perli, A. Fridkin, P. Perez-Pinera, T. K. Lu, Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol. Cell. 54, 698-710 (2014) doi: 10.1016/j. molcel.2014.04.022; pmid: 24837679
    • (2014) Mol. Cell , vol.54 , pp. 698-710
    • Nissim, L.1    Perli, S.D.2    Fridkin, A.3    Perez-Pinera, P.4    Lu, T.K.5
  • 14
    • 84908508061 scopus 로고    scopus 로고
    • Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease
    • pmid: 25079318
    • C. Anders, O. Niewoehner, A. Duerst, M. Jinek, Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease. Nature 513, 569-573 (2014). doi: 10.1038/nature13579; pmid: 25079318
    • (2014) Nature , vol.513 , pp. 569-573
    • Anders, C.1    Niewoehner, O.2    Duerst, A.3    Jinek, M.4
  • 15
    • 79960978444 scopus 로고    scopus 로고
    • Tracking genome engineering outcome at individual DNA breakpoints
    • pmid: 21743461
    • M. T. Certo et al., Tracking genome engineering outcome at individual DNA breakpoints. Nat. Methods 8, 671-676 (2011). doi: 10.1038/nmeth.1648; pmid: 21743461
    • (2011) Nat. Methods , vol.8 , pp. 671-676
    • Certo, M.T.1
  • 16
    • 57449112781 scopus 로고    scopus 로고
    • Inducible and reversible gene silencing by stable integration of an shRNA-encoding lentivirus in transgenic rats
    • pmid: 19017805
    • M. J. Herold, J. van den Brandt, J. Seibler, H. M. Reichardt, Inducible and reversible gene silencing by stable integration of an shRNA-encoding lentivirus in transgenic rats. Proc. Natl. Acad. Sci. U.S.A. 105, 18507-18512 (2008). doi: 10.1073/pnas.0806213105; pmid: 19017805
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 18507-18512
    • Herold, M.J.1    Van Den-Brandt, J.2    Seibler, J.3    Reichardt, H.M.4
  • 17
    • 84861372888 scopus 로고    scopus 로고
    • Shifting the paradigm: The putative mitochondrial protein ABCB6 resides in the lysosomes of cells and in the plasma membrane of erythrocytes
    • pmid: 22655043
    • K. Kiss et al., Shifting the paradigm: The putative mitochondrial protein ABCB6 resides in the lysosomes of cells and in the plasma membrane of erythrocytes. PLOS ONE 7, e37378-e37378 (2012). doi: 10.1371/journal.pone.0037378; pmid: 22655043
    • (2012) PloS One , vol.7 , pp. e37378-e37378
    • Kiss, K.1
  • 18
    • 12544254834 scopus 로고    scopus 로고
    • Acute inflammatory response to endotoxin in mice and humans
    • pmid: 15642986
    • S. Copeland, H. S. Warren, S. F. Lowry, S. E. Calvano, D. Remick Inflammation and the Host Response to Injury Investigators, Acute inflammatory response to endotoxin in mice and humans. Clin. Diagn. Lab. Immunol. 12, 60-67 (2005). pmid: 15642986
    • (2005) Clin. Diagn. Lab. Immunol. , vol.12 , pp. 60-67
    • Copeland, S.1    Warren, H.S.2    Lowry, S.F.3    Calvano, S.E.4    Remick, D.5
  • 19
    • 0027384648 scopus 로고
    • LPS-induced sTNF-receptor release in vivo in a murine model. Investigation of the role of tumor necrosis factor, IL-1, leukemia inhibiting factor, and IFN-gamma
    • pmid: 8228246
    • M. H. Bemelmans, D. J. Gouma, W. A. Buurman, LPS-induced sTNF-receptor release in vivo in a murine model. Investigation of the role of tumor necrosis factor, IL-1, leukemia inhibiting factor, and IFN-gamma. J. Immunol. 151, 5554-5562 (1993). pmid: 8228246
    • (1993) J. Immunol. , vol.151 , pp. 5554-5562
    • Bemelmans, M.H.1    Gouma, D.J.2    Buurman, W.A.3
  • 20
    • 0029992609 scopus 로고    scopus 로고
    • Suppression of TNF-A-induced apoptosis by NF-kB
    • pmid: 8864120
    • D. J. Van Antwerp, S. J. Martin, T. Kafri, D. R. Green, I. M. Verma, Suppression of TNF-a-induced apoptosis by NF-kB. Science 274, 787-789 (1996). doi: 10.1126/science.274.5288.787; pmid: 8864120
    • (1996) Science , vol.274 , pp. 787-789
    • Van Antwerp, D.J.1    Martin, S.J.2    Kafri, T.3    Green, D.R.4    Verma, I.M.5
  • 21
    • 0032515950 scopus 로고    scopus 로고
    • Pathophysiologically relevant concentrations of tumor necrosis factor-alpha promote progressive left ventricular dysfunction and remodeling in rats
    • pmid: 9577950
    • B. Bozkurt et al., Pathophysiologically relevant concentrations of tumor necrosis factor-alpha promote progressive left ventricular dysfunction and remodeling in rats. Circulation 97, 1382-1391 (1998). doi: 10.1161/01.CIR.97.14.1382; pmid: 9577950
    • (1998) Circulation , vol.97 , pp. 1382-1391
    • Bozkurt, B.1
  • 22
    • 53549102755 scopus 로고    scopus 로고
    • The tumor microenvironment and its role in promoting tumor growth
    • pmid: 18836471
    • T. L. Whiteside, The tumor microenvironment and its role in promoting tumor growth. Oncogene 27, 5904-5912 (2008). doi: 10.1038/onc.2008.271; pmid: 18836471
    • (2008) Oncogene , vol.27 , pp. 5904-5912
    • Whiteside, T.L.1
  • 23
    • 34248583886 scopus 로고    scopus 로고
    • MAP kinase signalling pathways in cancer
    • pmid: 17496922
    • A. S. Dhillon, S. Hagan, O. Rath, W. Kolch, MAP kinase signalling pathways in cancer. Oncogene 26, 3279-3290 (2007). doi: 10.1038/sj.onc.1210421; pmid: 17496922
    • (2007) Oncogene , vol.26 , pp. 3279-3290
    • Dhillon, A.S.1    Hagan, S.2    Rath, O.3    Kolch, W.4
  • 24
    • 0032406715 scopus 로고    scopus 로고
    • Mechanisms of Wnt signaling in development
    • pmid: 9891778
    • A. Wodarz, R. Nusse, Mechanisms of Wnt signaling in development. Annu. Rev. Cell Dev. Biol. 14, 59-88 (1998). doi: 10.1146/annurev.cellbio.14.1.59; pmid: 9891778
    • (1998) Annu. Rev. Cell Dev. Biol. , vol.14 , pp. 59-88
    • Wodarz, A.1    Nusse, R.2
  • 25
    • 33751549095 scopus 로고    scopus 로고
    • Targeting the Hedgehog pathway in cancer
    • pmid: 17139287
    • L. L. Rubin, F. J. de Sauvage, Targeting the Hedgehog pathway in cancer. Nat. Rev. Drug Discov. 5, 1026-1033 (2006). doi: 10.1038/nrd2086; pmid: 17139287
    • (2006) Nat. Rev. Drug Discov. , vol.5 , pp. 1026-1033
    • Rubin, L.L.1    De Sauvage, F.J.2
  • 26
    • 0034785348 scopus 로고    scopus 로고
    • TGF-b signaling in tumor suppression and cancer progression
    • pmid: 11586292
    • R. Derynck, R. J. Akhurst, A. Balmain, TGF-b signaling in tumor suppression and cancer progression. Nat. Genet. 29, 117-129 (2001). doi: 10.1038/ng1001-117; pmid: 11586292
    • (2001) Nat. Genet. , vol.29 , pp. 117-129
    • Derynck, R.1    Akhurst, R.J.2    Balmain, A.3
  • 27
    • 84888626405 scopus 로고    scopus 로고
    • Modernizing the nonhomologous end-joining repertoire: Alternative and classical NHEJ share the stage
    • pmid: 24050180
    • L. Deriano, D. B. Roth, Modernizing the nonhomologous end-joining repertoire: Alternative and classical NHEJ share the stage. Annu. Rev. Genet. 47, 433-455 (2013). doi: 10.1146/annurev-genet-110711-155540; pmid: 24050180
    • (2013) Annu. Rev. Genet. , vol.47 , pp. 433-455
    • Deriano, L.1    Roth, D.B.2
  • 29
    • 47249099910 scopus 로고    scopus 로고
    • Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA
    • pmid: 18511461
    • M. Minczuk, M. A. Papworth, J. C. Miller, M. P. Murphy, A. Klug, Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA. Nucleic Acids Res. 36, 3926-3938 (2008). doi: 10.1093/nar/gkn313; pmid: 18511461
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3926-3938
    • Minczuk, M.1    Papworth, M.A.2    Miller, J.C.3    Murphy, M.P.4    Klug, A.5
  • 30
    • 84971006562 scopus 로고    scopus 로고
    • Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
    • pmid: 27096365
    • A. C. Komor, Y. B. Kim, M. S. Packer, J. A. Zuris, D. R. Liu, Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Nature 533, 420-424 (2016). doi: 10.1038/nature17946; pmid: 27096365
    • (2016) Nature , vol.533 , pp. 420-424
    • Komor, A.C.1    Kim, Y.B.2    Packer, M.S.3    Zuris, J.A.4    Liu, D.R.5
  • 31
    • 32344450824 scopus 로고    scopus 로고
    • Genomic DNA methylation: The mark and its mediators
    • pmid: 16403636
    • R. J. Klose, A. P. Bird, Genomic DNA methylation: The mark and its mediators. Trends Biochem. Sci. 31, 89-97 (2006). doi: 10.1016/j.tibs.2005.12.008; pmid: 16403636
    • (2006) Trends Biochem. Sci. , vol.31 , pp. 89-97
    • Klose, R.J.1    Bird, A.P.2
  • 32
    • 84890048526 scopus 로고    scopus 로고
    • Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins
    • pmid: 24108092
    • M. L. Maeder et al., Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins. Nat. Biotechnol. 31, 1137-1142 (2013). doi: 10.1038/nbt.2726; pmid: 24108092
    • (2013) Nat. Biotechnol. , vol.31 , pp. 1137-1142
    • Maeder, M.L.1
  • 33
    • 84897090228 scopus 로고    scopus 로고
    • Highly multiplexed subcellular RNA sequencing in situ
    • pmid: 24578530
    • J. H. Lee et al., Highly multiplexed subcellular RNA sequencing in situ. Science 343, 1360-1363 (2014). doi: 10.1126/science.1250212; pmid: 24578530
    • (2014) Science , vol.343 , pp. 1360-1363
    • Lee, J.H.1
  • 34
    • 0036468677 scopus 로고    scopus 로고
    • Germline transmission and tissue-specific expression of transgenes delivered by lentiviral vectors
    • pmid: 11786607
    • C. Lois, E. J. Hong, S. Pease, E. J. Brown, D. Baltimore, Germline transmission and tissue-specific expression of transgenes delivered by lentiviral vectors. Science 295, 868-872 (2002). doi: 10.1126/science.1067081; pmid: 11786607
    • (2002) Science , vol.295 , pp. 868-872
    • Lois, C.1    Hong, E.J.2    Pease, S.3    Brown, E.J.4    Baltimore, D.5
  • 35
    • 82055164092 scopus 로고    scopus 로고
    • ViennaRNA package 2.0
    • pmid: 22115189
    • R. Lorenz et al., ViennaRNA Package 2.0. Algorithms Mol. Biol. 6, 26 (2011). doi: 10.1186/1748-7188-6-26; pmid: 22115189
    • (2011) Algorithms Mol. Biol. , vol.6 , pp. 26
    • Lorenz, R.1
  • 36
    • 84897676120 scopus 로고    scopus 로고
    • PEAR: A fast and accurate Illumina Paired-End reAd mergeR
    • pmid: 24142950
    • J. Zhang, K. Kobert, T. Flouri, A. Stamatakis, PEAR: A fast and accurate Illumina Paired-End reAd mergeR. Bioinformatics 30, 614-620 (2014). doi: 10.1093/bioinformatics/btt593; pmid: 24142950
    • (2014) Bioinformatics , vol.30 , pp. 614-620
    • Zhang, J.1    Kobert, K.2    Flouri, T.3    Stamatakis, A.4
  • 37
    • 0022899010 scopus 로고
    • Optimal sequence alignment using affine gap costs
    • pmid: 3580642
    • S. F. Altschul, B. W. Erickson, Optimal sequence alignment using affine gap costs. Bull. Math. Biol. 48, 603-616 (1986). doi: 10.1007/BF02462326; pmid: 3580642
    • (1986) Bull. Math. Biol. , vol.48 , pp. 603-616
    • Altschul, S.F.1    Erickson, B.W.2
  • 38
    • 84896308706 scopus 로고    scopus 로고
    • Cas-OFFinder: A fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
    • pmid: 24463181
    • S. Bae, J. Park, J.-S. Kim, Cas-OFFinder: A fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics 30, 1473-1475 (2014). doi: 10.1093/bioinformatics/btu048; pmid: 24463181
    • (2014) Bioinformatics , vol.30 , pp. 1473-1475
    • Bae, S.1    Park, J.2    Kim, J.-S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.