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Volumn 70, Issue 5, 2017, Pages 553-561

Enhanced dereplication of fungal cultures via use of mass defect filtering

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL EXTRACT; BIOLOGICAL PRODUCT;

EID: 85014735277     PISSN: 00218820     EISSN: 18811469     Source Type: Journal    
DOI: 10.1038/ja.2016.145     Document Type: Article
Times cited : (36)

References (48)
  • 1
    • 0018386220 scopus 로고
    • Avermectins, new family of potent anthelmintic agents: Producing organism and fermentation
    • Burg, R. W. et al. Avermectins, new family of potent anthelmintic agents: producing organism and fermentation. Antimicrob. Agents Chemother. 15, 361-367 (1979).
    • (1979) Antimicrob. Agents Chemother. , vol.15 , pp. 361-367
    • Burg, R.W.1
  • 2
    • 0018356497 scopus 로고
    • Avermectins, new family of potent anthelmintic agents: Efficacy of the B1a component
    • Egerton, J. R. et al. Avermectins, new family of potent anthelmintic agents: efficacy of the B1a component. Antimicrob. Agents Chemother. 15, 372-378 (1979).
    • (1979) Antimicrob. Agents Chemother. , vol.15 , pp. 372-378
    • Egerton, J.R.1
  • 4
    • 84962367258 scopus 로고    scopus 로고
    • Natural products as sources of new drugs from 1981 to 2014
    • Newman, D. J. Natural products as sources of new drugs from 1981 to 2014. J. Nat. Prod. 79, 629-661 (2016).
    • (2016) J. Nat. Prod. , vol.79 , pp. 629-661
    • Newman, D.J.1
  • 5
    • 84876002671 scopus 로고    scopus 로고
    • Natural products: A continuuing source of novel drug leads
    • Cragg, G. M. & Newman, D. J. Natural products: a continuuing source of novel drug leads. Biochim. Biophys. Acta 1830, 3670-3695 (2013).
    • (2013) Biochim. Biophys. Acta , vol.1830 , pp. 3670-3695
    • Cragg, G.M.1    Newman, D.J.2
  • 6
    • 84858308226 scopus 로고    scopus 로고
    • Natural products as sources of new drugs over the 30 years from 1981 to 2010
    • Newman, D. J. & Cragg, G. M. Natural products as sources of new drugs over the 30 years from 1981 to 2010. J. Nat. Prod. 75, 311-335 (2012).
    • (2012) J. Nat. Prod. , vol.75 , pp. 311-335
    • Newman, D.J.1    Cragg, G.M.2
  • 7
    • 84926205808 scopus 로고    scopus 로고
    • The re-emergence of natural products for drug discovery in the genomics era
    • Harvey, A. L., Edrada-Ebel, R. & Quinn, R. J. The re-emergence of natural products for drug discovery in the genomics era. Nat. Rev. Drug Discov. 14, 111-129 (2015).
    • (2015) Nat. Rev. Drug Discov. , vol.14 , pp. 111-129
    • Harvey, A.L.1    Edrada-Ebel, R.2    Quinn, R.J.3
  • 8
    • 85015789600 scopus 로고    scopus 로고
    • Dereplication strategies in natural product research: How many tools and methodologies behind the same concept?
    • Hubert, J., Nuzillard, J.-M. & Renault, J.-H. Dereplication strategies in natural product research: how many tools and methodologies behind the same concept? Phytochem. Rev. 15, 1-41 (2015).
    • (2015) Phytochem. Rev. , vol.15 , pp. 1-41
    • Hubert, J.1    Nuzillard, J.-M.2    Renault, J.-H.3
  • 9
    • 84930175909 scopus 로고    scopus 로고
    • Dereplication: Racing to speed up the natural products discovery process
    • Gaudencio, S. P. & Pereira, F. Dereplication: racing to speed up the natural products discovery process. Nat. Prod. Rep. 32, 779-810 (2015).
    • (2015) Nat. Prod. Rep. , vol.32 , pp. 779-810
    • Gaudencio, S.P.1    Pereira, F.2
  • 10
    • 84901500239 scopus 로고    scopus 로고
    • Dereplication of microbial extracts and related analytical technologies
    • Ito, T. & Masubuchi, M. Dereplication of microbial extracts and related analytical technologies. J. Antibiot. 67, 353-360 (2014).
    • (2014) J. Antibiot. , vol.67 , pp. 353-360
    • Ito, T.1    Masubuchi, M.2
  • 11
    • 84959419522 scopus 로고    scopus 로고
    • Biochemometrics for natural products research: Comparison of data analysis approaches and application to identification of bioactive compounds
    • Kellogg, J. J. et al. Biochemometrics for natural products research: comparison of data analysis approaches and application to identification of bioactive compounds. J. Nat. Prod. 79, 376-386 (2016).
    • (2016) J. Nat. Prod. , vol.79 , pp. 376-386
    • Kellogg, J.J.1
  • 12
    • 84922864949 scopus 로고    scopus 로고
    • Current approaches and challenges for the metabolite profiling of complex natural extracts
    • Wolfender, J.-L., Marti, G., Thomas, A. & Bertrand, S. Current approaches and challenges for the metabolite profiling of complex natural extracts. J. Chromatogr. A 1382, 136-164 (2015).
    • (2015) J. Chromatogr. A , vol.1382 , pp. 136-164
    • Wolfender, J.-L.1    Marti, G.2    Thomas, A.3    Bertrand, S.4
  • 13
    • 84900869836 scopus 로고    scopus 로고
    • Mass spectrometry in plant metabolomics strategies: From analytical platforms to data acquisition and processing
    • Ernst, M., Silva, D. B., Silva, R. R., Vencio, R. Z. N. & Lopes, N. P. Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing. Nat. Prod. Rep. 31, 784-806 (2014).
    • (2014) Nat. Prod. Rep. , vol.31 , pp. 784-806
    • Ernst, M.1    Silva, D.B.2    Silva, R.R.3    Vencio, R.Z.N.4    Lopes, N.P.5
  • 14
    • 84877794465 scopus 로고    scopus 로고
    • Structure-oriented UHPLC-LTQ Orbitrap-based approach as a dereplication strategy for the identification of isoflavonoids from Amphimas pterocarpoides crude extract
    • Tchoumtchoua, J., Njamen, D., Mbanya, J. C., Skaltsounis, A. L. & Halabalaki, M. Structure-oriented UHPLC-LTQ Orbitrap-based approach as a dereplication strategy for the identification of isoflavonoids from Amphimas pterocarpoides crude extract. J. Mass Spectrom. 48, 561-575 (2013).
    • (2013) J. Mass Spectrom. , vol.48 , pp. 561-575
    • Tchoumtchoua, J.1    Njamen, D.2    Mbanya, J.C.3    Skaltsounis, A.L.4    Halabalaki, M.5
  • 15
    • 67650218872 scopus 로고    scopus 로고
    • Discovery of anticancer agents of diverse natural origin
    • Kinghorn, A. D. Discovery of anticancer agents of diverse natural origin. Pure Appl. Chem. 81, 1051-1063 (2009).
    • (2009) Pure Appl. Chem. , vol.81 , pp. 1051-1063
    • Kinghorn, A.D.1
  • 16
    • 84864987464 scopus 로고    scopus 로고
    • Chemical diversity of metabolites from fungi, cyanobacteria, and plants relative to FDA-approved anticancer agents
    • El-Elimat, T. et al. Chemical diversity of metabolites from fungi, cyanobacteria, and plants relative to FDA-approved anticancer agents. ACS Med. Chem. Lett. 3, 645-649 (2012).
    • (2012) ACS Med. Chem. Lett. , vol.3 , pp. 645-649
    • El-Elimat, T.1
  • 17
    • 77957293285 scopus 로고    scopus 로고
    • Dereplication of macrocyclic trichothecenes from extracts of filamentous fungi through UV and NMR profiles
    • Sy-Cordero, A. A. et al. Dereplication of macrocyclic trichothecenes from extracts of filamentous fungi through UV and NMR profiles. J. Antibiot. 63, 539-544 (2010).
    • (2010) J. Antibiot. , vol.63 , pp. 539-544
    • Sy-Cordero, A.A.1
  • 18
    • 84940488809 scopus 로고    scopus 로고
    • Dereplicating and spatial mapping of secondary metabolites from fungal cultures in situ
    • Sica, V. P. et al. Dereplicating and spatial mapping of secondary metabolites from fungal cultures in situ. J. Nat. Prod. 78, 1926-1936 (2015).
    • (2015) J. Nat. Prod. , vol.78 , pp. 1926-1936
    • Sica, V.P.1
  • 19
    • 67650494794 scopus 로고    scopus 로고
    • Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry
    • Zhang, H., Zhang, D., Ray, K. & Zhu, M. Mass defect filter technique and its applications to drug metabolite identification by high-resolution mass spectrometry. J. Mass Spectrom. 44, 999-1016 (2009).
    • (2009) J. Mass Spectrom. , vol.44 , pp. 999-1016
    • Zhang, H.1    Zhang, D.2    Ray, K.3    Zhu, M.4
  • 20
    • 33748902567 scopus 로고    scopus 로고
    • Detection and characterization of metabolites in biological matrices using mass defect filtering of liquid chromatography/high resolution mass spectrometry data
    • Zhu, M. et al. Detection and characterization of metabolites in biological matrices using mass defect filtering of liquid chromatography/high resolution mass spectrometry data. Drug Metab. Dispos. 34, 1722-1733 (2006).
    • (2006) Drug Metab. Dispos. , vol.34 , pp. 1722-1733
    • Zhu, M.1
  • 21
    • 84945483233 scopus 로고    scopus 로고
    • The application of high-resolution mass spectrometry-based data-mining tools in tandem to metabolite profiling of a triple drug combination in humans
    • Xing, J., Zang, M., Zhang, H. & Zhu, M. The application of high-resolution mass spectrometry-based data-mining tools in tandem to metabolite profiling of a triple drug combination in humans. Anal. Chim. Acta 897, 34-44 (2015).
    • (2015) Anal. Chim. Acta , vol.897 , pp. 34-44
    • Xing, J.1    Zang, M.2    Zhang, H.3    Zhu, M.4
  • 22
    • 84875729513 scopus 로고    scopus 로고
    • Software aided approaches to structure-based metabolite identification in drug discovery and development
    • Pähler, A. & Brink, A. Software aided approaches to structure-based metabolite identification in drug discovery and development. Drug Discov. Today Technol. 10, e207-e217 (2013).
    • (2013) Drug Discov. Today Technol. , vol.10 , pp. e207-e217
    • Pähler, A.1    Brink, A.2
  • 23
    • 84857494184 scopus 로고    scopus 로고
    • The use of mass defect in modern mass spectrometry
    • Sleno, L. The use of mass defect in modern mass spectrometry. J. Mass Spectrom. 47, 226-236 (2012).
    • (2012) J. Mass Spectrom. , vol.47 , pp. 226-236
    • Sleno, L.1
  • 24
    • 84926169180 scopus 로고    scopus 로고
    • Relative mass defect filtering of mass spectra: A path to discovery of plant specialized metabolites
    • Ekanayaka, E. A. P., Celiz, M. D. & Jones, A. D. Relative mass defect filtering of mass spectra: a path to discovery of plant specialized metabolites. Plant Physiol. 167, 1221-1232 (2015).
    • (2015) Plant Physiol. , vol.167 , pp. 1221-1232
    • Ekanayaka, E.A.P.1    Celiz, M.D.2    Jones, A.D.3
  • 25
    • 84973454475 scopus 로고    scopus 로고
    • Comprehensive qualitative ingredient profiling of Chinese herbal formula Wu-Zhu-Yu decoction via a mass defect and fragment filtering approach using high resolution mass spectrometry
    • Xu, H. et al. Comprehensive qualitative ingredient profiling of Chinese herbal formula Wu-Zhu-Yu decoction via a mass defect and fragment filtering approach using high resolution mass spectrometry. Molecules 21, 664 (2016).
    • (2016) Molecules , vol.21 , pp. 664
    • Xu, H.1
  • 26
    • 84863040802 scopus 로고    scopus 로고
    • Rapid identification of ophiopogonins and ophiopogonones in Ophiopogon japonicus extract with a practical technique of mass defect filtering based on high resolution mass spectrometry
    • Xie, T. et al. Rapid identification of ophiopogonins and ophiopogonones in Ophiopogon japonicus extract with a practical technique of mass defect filtering based on high resolution mass spectrometry. J. Chromatogr. A 1227, 234-244 (2012).
    • (2012) J. Chromatogr. A , vol.1227 , pp. 234-244
    • Xie, T.1
  • 27
    • 84885084934 scopus 로고    scopus 로고
    • High-Resolution MS, MS/MS, and UV database of fungal secondary metabolites as a dereplication protocol for bioactive natural products
    • El-Elimat, T. et al. High-Resolution MS, MS/MS, and UV database of fungal secondary metabolites as a dereplication protocol for bioactive natural products. J. Nat. Prod. 76, 1709-1716 (2013).
    • (2013) J. Nat. Prod. , vol.76 , pp. 1709-1716
    • El-Elimat, T.1
  • 29
    • 34548127562 scopus 로고    scopus 로고
    • Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface
    • Page, J. S. Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface. J. Am. Soc. Mass Spectrom 18, 1582-1590 (2007).
    • (2007) J. Am. Soc. Mass Spectrom , vol.18 , pp. 1582-1590
    • Page, J.S.1
  • 30
    • 80155131161 scopus 로고    scopus 로고
    • Verticillin A overcomes apoptosis resistance in human colon carcinoma through DNA methylation-dependent upregulation of BNIP3
    • Liu, F. et al. Verticillin A overcomes apoptosis resistance in human colon carcinoma through DNA methylation-dependent upregulation of BNIP3. Cancer Res. 71, 6807-6816 (2011).
    • (2011) Cancer Res. , vol.71 , pp. 6807-6816
    • Liu, F.1
  • 31
    • 84938930600 scopus 로고    scopus 로고
    • H3K9 trimethylation silences Fas expression to confer colon carcinoma immune escape and 5-fluorouracil chemoresistance
    • Paschall, A. V. et al. H3K9 trimethylation silences Fas expression to confer colon carcinoma immune escape and 5-fluorouracil chemoresistance. J. Immunol. 195, 1868-1882 (2015).
    • (2015) J. Immunol. , vol.195 , pp. 1868-1882
    • Paschall, A.V.1
  • 32
    • 21244435263 scopus 로고    scopus 로고
    • The p53 pathway is synergized by p38 MAPK signaling to mediate 11,11′-dideoxyverticillin-induced G2/M arrest
    • Chen, Y., Miao, Z.-H., Zhao, W.-M. & Ding, J. The p53 pathway is synergized by p38 MAPK signaling to mediate 11,11′-dideoxyverticillin-induced G2/M arrest. FEBS Lett. 579, 3683-3690 (2005).
    • (2005) FEBS Lett. , vol.579 , pp. 3683-3690
    • Chen, Y.1    Miao, Z.-H.2    Zhao, W.-M.3    Ding, J.4
  • 33
    • 21044436266 scopus 로고    scopus 로고
    • 11,11′-Dideoxyverticillin: A natural compound possessing growth factor receptor tyrosine kinase-inhibitory effect with anti-tumor activity
    • Zhang, Y. X. et al. 11,11′Dideoxyverticillin: a natural compound possessing growth factor receptor tyrosine kinase-inhibitory effect with anti-tumor activity. Anticancer Drugs 16, 515-524 (2005).
    • (2005) Anticancer Drugs , vol.16 , pp. 515-524
    • Zhang, Y.X.1
  • 34
    • 84870362028 scopus 로고    scopus 로고
    • Cytotoxic epipolythiodioxopiperazine alkaloids from filamentous fungi of the Bionectriaceae
    • Figueroa, M. et al. Cytotoxic epipolythiodioxopiperazine alkaloids from filamentous fungi of the Bionectriaceae. J. Antibiot. 65, 559-564 (2012).
    • (2012) J. Antibiot. , vol.65 , pp. 559-564
    • Figueroa, M.1
  • 35
    • 84924254730 scopus 로고    scopus 로고
    • A novel dereplication strategy for the identification of two new trace compounds in the extract of Gastrodia elata using UHPLC/Q-TOF-MS/MS
    • Li, Z. et al. A novel dereplication strategy for the identification of two new trace compounds in the extract of Gastrodia elata using UHPLC/Q-TOF-MS/MS. J. Chromatogr. B 988, 45-52 (2015).
    • (2015) J. Chromatogr. B , vol.988 , pp. 45-52
    • Li, Z.1
  • 36
    • 33846882134 scopus 로고    scopus 로고
    • Structure elucidation of arabinoxylan isomers by normal phase HPLC-MALDI-TOF/TOF-MS/MS
    • Maslen, S. L., Goubet, F., Adam, A., Dupree, P. & Stephens, E. Structure elucidation of arabinoxylan isomers by normal phase HPLC-MALDI-TOF/TOF-MS/MS. Carbohydr. Res. 342, 724-735 (2007).
    • (2007) Carbohydr. Res. , vol.342 , pp. 724-735
    • Maslen, S.L.1    Goubet, F.2    Adam, A.3    Dupree, P.4    Stephens, E.5
  • 37
    • 84862575886 scopus 로고    scopus 로고
    • Viscosalines B 1,2 and E 1,2: Challenging new 3-alkyl pyridinium alkaloids from the marine sponge Haliclona viscosa
    • Schmidt, G. Viscosalines B 1,2 and E 1,2: challenging new 3-alkyl pyridinium alkaloids from the marine sponge Haliclona viscosa. Chem. Eur. J 18, 8180-8189 (2012).
    • (2012) Chem. Eur. J , vol.18 , pp. 8180-8189
    • Schmidt, G.1
  • 38
    • 84982836699 scopus 로고    scopus 로고
    • Antimicrobial fungal endophytes from the botanical medicine goldenseal (Hydrastis canadensis)
    • Egan, J. M. et al. Antimicrobial fungal endophytes from the botanical medicine goldenseal (Hydrastis canadensis). Phytochem. Lett. 17, 219-225 (2016).
    • (2016) Phytochem. Lett. , vol.17 , pp. 219-225
    • Egan, J.M.1
  • 39
    • 0036902202 scopus 로고    scopus 로고
    • Big effects from small changes: Possible ways to explore nature's chemical diversity
    • Bode, H. B., Bethe, B., Hofs, R. & Zeeck, A. Big effects from small changes: possible ways to explore nature's chemical diversity. Chembiochem. 3, 619-627 (2002).
    • (2002) Chembiochem. , vol.3 , pp. 619-627
    • Bode, H.B.1    Bethe, B.2    Hofs, R.3    Zeeck, A.4
  • 40
    • 84960532998 scopus 로고    scopus 로고
    • Acetophenone derivatives from a freshwater fungal isolate of recently described Lindgomyces madisonensis (G416)
    • Paguigan, N. D., Raja, H. A., Day, C. S. & Oberlies, N. H. Acetophenone derivatives from a freshwater fungal isolate of recently described Lindgomyces madisonensis (G416). Phytochemistry 126, 59-65 (2016).
    • (2016) Phytochemistry , vol.126 , pp. 59-65
    • Paguigan, N.D.1    Raja, H.A.2    Day, C.S.3    Oberlies, N.H.4
  • 41
    • 84912112718 scopus 로고    scopus 로고
    • Diversity of Clonostachys species assessed by molecular phylogenetics and MALDI-TOF mass spectrometry
    • Abreu, L. M., Moreira, G. M., Ferreira, D., Rodrigues-Filho, E. & Pfenning, L. H. Diversity of Clonostachys species assessed by molecular phylogenetics and MALDI-TOF mass spectrometry. Fungal Biol. 118, 1004-1012 (2014).
    • (2014) Fungal Biol. , vol.118 , pp. 1004-1012
    • Abreu, L.M.1    Moreira, G.M.2    Ferreira, D.3    Rodrigues-Filho, E.4    Pfenning, L.H.5
  • 42
    • 84928773200 scopus 로고    scopus 로고
    • Phylogenetic and chemical diversity of fungal endophytes isolated from Silybum marianum (L) Gaertn. (Milk thistle)
    • Raja, H. A. et al. Phylogenetic and chemical diversity of fungal endophytes isolated from Silybum marianum (L) Gaertn. (milk thistle). Mycology 6, 8-27 (2015).
    • (2015) Mycology , vol.6 , pp. 8-27
    • Raja, H.A.1
  • 43
    • 84942413870 scopus 로고    scopus 로고
    • Minutisphaerales (Dothideomycetes, Ascomycota): A new order of freshwater ascomycetes including a new family, Minutisphaeraceae, and two new species from North Carolina, USA
    • Raja, H. A. et al. Minutisphaerales (Dothideomycetes, Ascomycota): a new order of freshwater ascomycetes including a new family, Minutisphaeraceae, and two new species from North Carolina, USA. Mycologia 107, 845-862 (2015).
    • (2015) Mycologia , vol.107 , pp. 845-862
    • Raja, H.A.1
  • 44
    • 84978411808 scopus 로고    scopus 로고
    • DNA barcoding for identification of consumer-relevant mushrooms: A partial solution for product certification?
    • Raja, H. A., Baker, T. R., Little, J. G. & Oberlies, N. H. DNA barcoding for identification of consumer-relevant mushrooms: a partial solution for product certification? Food Chem. 214, 383-392 (2017).
    • (2017) Food Chem. , vol.214 , pp. 383-392
    • Raja, H.A.1    Baker, T.R.2    Little, J.G.3    Oberlies, N.H.4
  • 45
    • 84856945697 scopus 로고    scopus 로고
    • Testing the phylogenetic utility of MCM7 in the Ascomycota
    • Raja, H., Schoch, C. L., Hustad, V., Shearer, C. & Miller, A. Testing the phylogenetic utility of MCM7 in the Ascomycota. MycoKeys 1, 63 (2011).
    • (2011) MycoKeys , vol.1 , pp. 63
    • Raja, H.1    Schoch, C.L.2    Hustad, V.3    Shearer, C.4    Miller, A.5
  • 46
    • 0442326327 scopus 로고    scopus 로고
    • A monograph of Bionectria (Ascomycota, Hypocreales, Bionectriaceae) and its Clonostachys anamorphs
    • Schroers, H. J. A monograph of Bionectria (Ascomycota, Hypocreales, Bionectriaceae) and its Clonostachys anamorphs. Stud. Mycol. 2001, 1-211 (2002).
    • (2002) Stud. Mycol. , vol.2001 , pp. 1-211
    • Schroers, H.J.1
  • 47
    • 84908608893 scopus 로고    scopus 로고
    • Greensporones: Resorcylic acid lactones from an aquatic Halenospora sp
    • El-Elimat, T. et al. Greensporones: resorcylic acid lactones from an aquatic Halenospora sp. J. Nat. Prod. 77, 2088-2098 (2014).
    • (2014) J. Nat. Prod. , vol.77 , pp. 2088-2098
    • El-Elimat, T.1
  • 48
    • 84946499863 scopus 로고    scopus 로고
    • New diketopiperazine dimer from a filamentous fungal isolate of Aspergillus sydowii
    • Kaur, A. et al. New diketopiperazine dimer from a filamentous fungal isolate of Aspergillus sydowii. Magn. Reson. Chem. 53, 616-619 (2015).
    • (2015) Magn. Reson. Chem. , vol.53 , pp. 616-619
    • Kaur, A.1


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