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Volumn 40, Issue , 2017, Pages 14-22

Systematic testing of enzyme perturbation sensitivities via graded dCas9 modulation in Saccharomyces cerevisiae

Author keywords

CRISPR Cas9; Gene regulation; Metabolic engineering

Indexed keywords

BIOCHEMISTRY; ENZYMES; GENE EXPRESSION; GENES; ITERATIVE METHODS; METABOLIC ENGINEERING; METABOLISM; NUCLEIC ACIDS; TRANSCRIPTION; YEAST;

EID: 85013830067     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2017.01.012     Document Type: Article
Times cited : (95)

References (33)
  • 3
    • 0036168937 scopus 로고    scopus 로고
    • Engineering polydactyl zinc-finger transcription factors
    • Beerli, R.R., Barbas, C.F., Engineering polydactyl zinc-finger transcription factors. Nat. Biotechnol. 20 (2002), 135–141, 10.1038/nbt0202-135.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 135-141
    • Beerli, R.R.1    Barbas, C.F.2
  • 4
    • 0032437591 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks
    • (14628–33)
    • Beerli, R.R., Segal, D.J., Dreier, B., Barbas, C.F., Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks. Proc. Natl. Acad. Sci. USA, 95, 1998, 10.1073/pnas.95.25.14628 (14628–33).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95
    • Beerli, R.R.1    Segal, D.J.2    Dreier, B.3    Barbas, C.F.4
  • 5
    • 84858609338 scopus 로고    scopus 로고
    • Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology
    • Blount, B.A., Weenink, T., Vasylechko, S., Ellis, T., Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7 (2012), 1–11, 10.1371/journal.pone.0033279.
    • (2012) PLoS One , vol.7 , pp. 1-11
    • Blount, B.A.1    Weenink, T.2    Vasylechko, S.3    Ellis, T.4
  • 6
    • 0037108159 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter: a key component in the regulation of gene expression
    • Butler, J.E.F., Kadonaga, J.T., The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev. 16 (2002), 2583–2592, 10.1101/gad.1026202.
    • (2002) Genes Dev. , vol.16 , pp. 2583-2592
    • Butler, J.E.F.1    Kadonaga, J.T.2
  • 7
    • 0024330470 scopus 로고
    • Activation of yeast polymerase II transcription by herpesvirus VP16 and GAL4 derivatives in vitro
    • Chasman, D.I., Leatherwood, J., Carey, M., Ptashne, M., Kornberg, R.D., Activation of yeast polymerase II transcription by herpesvirus VP16 and GAL4 derivatives in vitro. Mol. Cell. Biol. 9 (1989), 4746–4749, 10.1128/MCB.9.11.4746.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 4746-4749
    • Chasman, D.I.1    Leatherwood, J.2    Carey, M.3    Ptashne, M.4    Kornberg, R.D.5
  • 9
    • 84930971149 scopus 로고    scopus 로고
    • CRISPathBrick: Modular combinatorial assembly of type II-A CRISPR arrays for dCas9-mediated multiplex transcriptional repression in E. coli
    • Cress, B.F., Toparlak, Ö.D., Guleria, S., Lebovich, M., Stieglitz, J.T., Englaender, J.A., Jones, J.A., Linhardt, R.J., Koffas, M.G., CRISPathBrick: Modular combinatorial assembly of type II-A CRISPR arrays for dCas9-mediated multiplex transcriptional repression in E. coli. ACS Synth. Biol. 4 (2015), 987–1000, 10.1021/acssynbio.5b00012.
    • (2015) ACS Synth. Biol. , vol.4 , pp. 987-1000
    • Cress, B.F.1    Toparlak, Ö.D.2    Guleria, S.3    Lebovich, M.4    Stieglitz, J.T.5    Englaender, J.A.6    Jones, J.A.7    Linhardt, R.J.8    Koffas, M.G.9
  • 10
    • 80051715222 scopus 로고    scopus 로고
    • Re-engineering multicloning sites for function and convenience
    • Crook, N.C., Freeman, E.S., Alper, H.S., Re-engineering multicloning sites for function and convenience. Nucleic Acids Res., 39, 2011, 10.1093/nar/gkr346.
    • (2011) Nucleic Acids Res. , vol.39
    • Crook, N.C.1    Freeman, E.S.2    Alper, H.S.3
  • 11
    • 84875265625 scopus 로고    scopus 로고
    • Metabolic engineering of muconic acid production in Saccharomyces cerevisiae
    • Curran, K.A., Leavitt, J.M., Karim, A.S., Alper, H.S., Metabolic engineering of muconic acid production in Saccharomyces cerevisiae. Metab. Eng. 15 (2013), 55–66, 10.1016/j.ymben.2012.10.003.
    • (2013) Metab. Eng. , vol.15 , pp. 55-66
    • Curran, K.A.1    Leavitt, J.M.2    Karim, A.S.3    Alper, H.S.4
  • 13
    • 84886488970 scopus 로고    scopus 로고
    • Tunable and multi-functional eukaryotic transcription factors based on CRISPR/Cas
    • Farzadfard, F., Perli, S.D., Lu, T.K., Tunable and multi-functional eukaryotic transcription factors based on CRISPR/Cas. ACS Synth. Biol. 2 (2013), 604–613, 10.1021/sb400081r.
    • (2013) ACS Synth. Biol. , vol.2 , pp. 604-613
    • Farzadfard, F.1    Perli, S.D.2    Lu, T.K.3
  • 15
    • 34347206860 scopus 로고    scopus 로고
    • High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
    • Gietz, R.D., Schiestl, R.H., High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat. Protoc. 2 (2007), 31–34, 10.1038/nprot.2007.13.
    • (2007) Nat. Protoc. , vol.2 , pp. 31-34
    • Gietz, R.D.1    Schiestl, R.H.2
  • 17
    • 84931041879 scopus 로고    scopus 로고
    • Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics
    • Gold, N.D., Gowen, C.M., Lussier, F.-X., Cautha, S.C., Mahadevan, R., Martin, V.J.J., Metabolic engineering of a tyrosine-overproducing yeast platform using targeted metabolomics. Microb. Cell. Fact., 14, 2015, 73, 10.1186/s12934-015-0252-2.
    • (2015) Microb. Cell. Fact. , vol.14 , pp. 73
    • Gold, N.D.1    Gowen, C.M.2    Lussier, F.-X.3    Cautha, S.C.4    Mahadevan, R.5    Martin, V.J.J.6
  • 18
    • 0036208491 scopus 로고    scopus 로고
    • Reduced oxidative pentose phosphate pathway flux in recombinant xylose-utilizing Saccharomyces cerevisiae strains improves the ethanol yield from xylose
    • Jeppsson, M., Johansson, B., Hahn-hägerdal, B., Gorwa-grauslund, M.F., Reduced oxidative pentose phosphate pathway flux in recombinant xylose-utilizing Saccharomyces cerevisiae strains improves the ethanol yield from xylose. Appl. Environ. Microbiol. 68 (2002), 1604–1609, 10.1128/AEM.68.4.1604.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1604-1609
    • Jeppsson, M.1    Johansson, B.2    Hahn-hägerdal, B.3    Gorwa-grauslund, M.F.4
  • 19
    • 0036053504 scopus 로고    scopus 로고
    • The non-oxidative pentose phosphate pathway controls the fermentation rate of xylulose but not of xylose in Saccharomyces cerevisiae TMB3001
    • Johansson, B., Hahn-Hägerdal, B., The non-oxidative pentose phosphate pathway controls the fermentation rate of xylulose but not of xylose in Saccharomyces cerevisiae TMB3001. FEMS Yeast Res. 2 (2002), 277–282, 10.1016/S1567-1356(02)00114-9.
    • (2002) FEMS Yeast Res. , vol.2 , pp. 277-282
    • Johansson, B.1    Hahn-Hägerdal, B.2
  • 20
    • 84860432496 scopus 로고    scopus 로고
    • Linking yeast Gcn5p catalytic function and gene regulation using a quantitative, graded dominant mutant approach
    • Lanza, A.M., Blazeck, J.J., Crook, N.C., Alper, H.S., Linking yeast Gcn5p catalytic function and gene regulation using a quantitative, graded dominant mutant approach. PLoS One, 7, 2012, e36193, 10.1371/journal.pone.0036193.
    • (2012) PLoS One , vol.7 , pp. e36193
    • Lanza, A.M.1    Blazeck, J.J.2    Crook, N.C.3    Alper, H.S.4
  • 21
    • 84922851448 scopus 로고    scopus 로고
    • Systematic and evolutionary engineering of a xylose isomerase-based pathway in Saccharomyces cerevisiae for efficient conversion yields
    • Lee, S.-M., Jellison, T., Alper, H.S., Systematic and evolutionary engineering of a xylose isomerase-based pathway in Saccharomyces cerevisiae for efficient conversion yields. Biotechnol. Biofuels, 7, 2014, 122, 10.1186/s13068-014-0122-x.
    • (2014) Biotechnol. Biofuels , vol.7 , pp. 122
    • Lee, S.-M.1    Jellison, T.2    Alper, H.S.3
  • 22
    • 84899021567 scopus 로고    scopus 로고
    • Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae
    • McIsaac, R.S., Gibney, P.A., Chandran, S.S., Benjamin, K.R., Botstein, D., Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae. Nucleic Acids Res. 42 (2014), 1–8, 10.1093/nar/gkt1402.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 1-8
    • McIsaac, R.S.1    Gibney, P.A.2    Chandran, S.S.3    Benjamin, K.R.4    Botstein, D.5
  • 23
    • 84876379604 scopus 로고    scopus 로고
    • Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast
    • McIsaac, R.S., Oakes, B.L., Wang, X., Dummit, K.A., Botstein, D., Noyes, M.B., Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Nucleic Acids Res. 41 (2013), 1–10, 10.1093/nar/gks1313.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 1-10
    • McIsaac, R.S.1    Oakes, B.L.2    Wang, X.3    Dummit, K.A.4    Botstein, D.5    Noyes, M.B.6
  • 24
    • 78650739853 scopus 로고    scopus 로고
    • Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors
    • (21617–22)
    • Morbitzer, R., Römer, P., Boch, J., Lahaye, T., Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors. Proc. Natl. Acad. Sci. USA, 107, 2010, 10.1073/pnas.1013133107 (21617–22).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107
    • Morbitzer, R.1    Römer, P.2    Boch, J.3    Lahaye, T.4
  • 25
    • 0028953840 scopus 로고
    • Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds
    • Mumberg, D., Müller, R., Funk, M., Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156 (1995), 119–122, 10.1016/0378-1119(95)00037-7.
    • (1995) Gene , vol.156 , pp. 119-122
    • Mumberg, D.1    Müller, R.2    Funk, M.3
  • 27
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi, L.S., Larson, M.H., Gilbert, L.A., Doudna, J.A., Weissman, J.S., Arkin, A.P., Lim, W.A., Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152 (2013), 1173–1183, 10.1016/j.cell.2013.02.022.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 28
    • 0035212553 scopus 로고    scopus 로고
    • Glycerol export and glycerol-3-phosphate dehydrogenase, but not glycerol phosphatase, are rate limiting for glycerol production in Saccharomyces cerevisiae
    • Remize, F., Barnavon, L., Dequin, S., Glycerol export and glycerol-3-phosphate dehydrogenase, but not glycerol phosphatase, are rate limiting for glycerol production in Saccharomyces cerevisiae. Metab. Eng. 3 (2001), 301–312, 10.1006/mben.2001.0197.
    • (2001) Metab. Eng. , vol.3 , pp. 301-312
    • Remize, F.1    Barnavon, L.2    Dequin, S.3
  • 29
    • 84960094162 scopus 로고    scopus 로고
    • Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design
    • Smith, J.D., Suresh, S., Schlecht, U., Wu, M., Wagih, O., Peltz, G., Davis, R.W., Steinmetz, L.M., Parts, L. St., Onge, R.P., Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design. Genome Biol., 17, 2016, 45, 10.1186/s13059-016-0900-9.
    • (2016) Genome Biol. , vol.17 , pp. 45
    • Smith, J.D.1    Suresh, S.2    Schlecht, U.3    Wu, M.4    Wagih, O.5    Peltz, G.6    Davis, R.W.7    Steinmetz, L.M.8    Parts, L.9    Onge, R.P.10
  • 30
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang, H.H., Isaacs, F.J., Carr, P.A., Sun, Z.Z., Xu, G., Forest, C.R., Church, G.M., Programming cells by multiplex genome engineering and accelerated evolution. Nature 460 (2009), 894–898, 10.1038/nature08187.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 31
    • 84940840437 scopus 로고    scopus 로고
    • Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli
    • Wu, J., Du, G., Chen, J., Zhou, J., Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli. Sci. Rep., 5, 2015, 13477, 10.1038/srep13477.
    • (2015) Sci. Rep. , vol.5 , pp. 13477
    • Wu, J.1    Du, G.2    Chen, J.3    Zhou, J.4
  • 32
    • 84953774938 scopus 로고    scopus 로고
    • PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae
    • Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E.J., Yun, E.J., Wemmer, D.E., Kim, K.H., Kim, S.R., Jin, Y.-S., PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae. Metab. Eng. 34 (2016), 88–96, 10.1016/j.ymben.2015.12.007.
    • (2016) Metab. Eng. , vol.34 , pp. 88-96
    • Xu, H.1    Kim, S.2    Sorek, H.3    Lee, Y.4    Jeong, D.5    Kim, J.6    Oh, E.J.7    Yun, E.J.8    Wemmer, D.E.9    Kim, K.H.10    Kim, S.R.11    Jin, Y.-S.12


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.