메뉴 건너뛰기




Volumn 42, Issue 6, 2014, Pages

Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; Z3EV PROTEIN;

EID: 84899021567     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt1402     Document Type: Article
Times cited : (75)

References (37)
  • 2
    • 84864634066 scopus 로고    scopus 로고
    • A synthetic biology framework for programming eukaryotic transcription functions
    • Khalil, A. S., Lu, T. K., Bashor, C. J., Ramirez, C. L., Pyenson, N. C., Joung, J. K. and Collins, J. J. (2012) A synthetic biology framework for programming eukaryotic transcription functions. Cell, 150, 647-658.
    • (2012) Cell , Issue.150 , pp. 647-658
    • Khalil, A.1    Lu, T.2    Bashor, C.3    Ramirez, C.4    Pyenson, N.5    Joung, J.K.6    Collins, J.J.7
  • 3
    • 84876379604 scopus 로고    scopus 로고
    • Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast
    • McIsaac, R. S., Oakes, B. L., Wang, X., Dummit, K. A., Botstein, D. and Noyes, M. B. (2013) Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Nucleic Acids Res., 41, e57.
    • (2013) Nucleic Acids Res , vol.41
    • McIsaac, R.S.1    Oakes, B.L.2    Wang, X.3    Dummit, K.A.4    Botstein, D.5    Noyes, M.B.6
  • 5
    • 84858609338 scopus 로고    scopus 로고
    • Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology
    • Blount, B. A., Weenink, T., Vasylechko, S. and Ellis, T. (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One, 7, e33279.
    • (2012) PLoS One , vol.7
    • Blount, B.A.1    Weenink, T.2    Vasylechko, S.3    Ellis, T.4
  • 8
    • 80655144718 scopus 로고    scopus 로고
    • Coordinated regulation of sulfur and phospholipid metabolism reflects the importance of methylation in the growth of yeast. Mol. Biol
    • Hickman, M. J., Petti, A. A., Ho-Shing, O., Silverman, S. J., McIsaac, R. S., Lee, T. A. and Botstein, D. (2011) Coordinated regulation of sulfur and phospholipid metabolism reflects the importance of methylation in the growth of yeast. Mol. Biol. Cell, 22, 4192-4204.
    • (2011) Cell , Issue.22 , pp. 4192-4204
    • Hickman, M.1    Petti, A.2    Ho-Shing, O.3    Silverman, S.4    McIsaac, R.5    Lee, T.A.6    Botstein, D.7
  • 9
    • 84864751449 scopus 로고    scopus 로고
    • Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway. Mol. Biol
    • McIsaac, R. S., Petti, A. A., Bussemaker, H. J. and Botstein, D. (2012) Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway. Mol. Biol. Cell, 23, 2993-3007.
    • (2012) Cell , Issue.23 , pp. 2993-3007
    • McIsaac, R.1    Petti, A.2    Bussemaker, H.J.3    Botstein, D.4
  • 11
    • 0032785638 scopus 로고    scopus 로고
    • Copper ion inducible and repressible promoter systems in yeast
    • Labbe, S. and Thiele, D. J. (1999) Copper ion inducible and repressible promoter systems in yeast. Methods Enzymol., 306, 145-153.
    • (1999) Methods Enzymol , vol.306 , pp. 145-153
    • LabbeS Thiele, D.J.1
  • 12
    • 0024440559 scopus 로고
    • Galactose as a gratuitous inducer of gal gene expression in yeasts growing on glucose
    • Hovland, P., Flick, J., Johnston, M. and Sclafani, R. A. (1989) Galactose as a gratuitous inducer of GAL gene expression in yeasts growing on glucose. Gene, 83, 57-64.
    • (1989) Gene , vol.83 , pp. 57-64
    • Hovland, P.1    Flick, J.2    Johnston, M.3    Sclafani, R.A.4
  • 13
    • 0032519306 scopus 로고    scopus 로고
    • An activator/repressor dual system allows tight tetracyclineregulated gene expression in budding yeast
    • Belli, G., Gari, E., Piedrafita, L., Aldea, M. and Herrero, E. (1998) An activator/repressor dual system allows tight tetracyclineregulated gene expression in budding yeast. Nucleic Acids Res., 26, 942-947.
    • (1998) Nucleic Acids Res , vol.26 , pp. 942-947
    • Belli, G.1    Gari, E.2    Piedrafita, L.3    Aldea, M.4    Herrero, E.5
  • 14
    • 0027240004 scopus 로고
    • Fusion of gal4-vp16 to a steroid-binding domain provides a tool for gratuitous induction of galactose-responsive genes in yeast
    • Louvion, J. F., Havaux-Copf, B. and Picard, D. (1993) Fusion of GAL4-VP16 to a steroid-binding domain provides a tool for gratuitous induction of galactose-responsive genes in yeast. Gene, 131, 129-134.
    • (1993) Gene , vol.131 , pp. 129-134
    • Louvion, J.1    Havaux-Copf, B.2    Picard, D.3
  • 15
    • 80655143315 scopus 로고    scopus 로고
    • Fast-acting and nearly gratuitous induction of gene expression and protein depletion in saccharomyces cerevisiae. Mol. Biol
    • McIsaac, R. S., Silverman, S. J., McClean, M. N., Gibney, P. A., Macinskas, J., Hickman, M. J., Petti, A. A. and Botstein, D. (2011) Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae. Mol. Biol. Cell, 22, 4447-4459.
    • (2011) Cell , Issue.22 , pp. 4447-4459
    • McIsaac, R.1    Silverman, S.2    McClean, M.3    Gibney, P.4    Macinskas, J.5    Hickman, M.6    Petti, A.A.7    Botstein, D.8
  • 16
    • 0034177385 scopus 로고    scopus 로고
    • Control of estrogen receptor ligand binding by hsp90. J. Steroid biochem
    • Fliss, A. E., Benzeno, S., Rao, J. and Caplan, A. J. (2000) Control of estrogen receptor ligand binding by Hsp90. J. Steroid Biochem. Mol. Biol., 72, 223-230.
    • (2000) Mol. Biol , vol.72 , pp. 223-230
    • Fliss, A.1    Benzeno, S.2    Rao, J.3    Caplan, A.J.4
  • 17
    • 49649109812 scopus 로고    scopus 로고
    • Membrane localization of scaffold proteins promotes graded signaling in the yeast map kinase cascade
    • Takahashi, S. and Pryciak, P. M. (2008) Membrane localization of scaffold proteins promotes graded signaling in the yeast MAP kinase cascade. Curr. Biol., 18, 1184-1191.
    • (2008) Curr. Biol , vol.18 , pp. 1184-1191
    • Takahashi, S.1    Pryciak, P.M.2
  • 18
    • 84888418933 scopus 로고    scopus 로고
    • Rapid synthesis and screening of chemically activated transcription factors with gfp-based reporters
    • McIsaac, R. S., Oakes, B. L., Botstein, D. and Noyes, M. B. (2013) Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters. J. Vis. Exp., 81, e51153.
    • (2013) J. Vis. Exp , vol.81
    • McIsaac, R.S.1    Oakes, B.L.2    Botstein, D.3    Noyes, M.B.4
  • 20
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acetate/single-stranded carrier dna/polyethylene glycol method
    • Gietz, R. D. and Woods, R. A. (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol., 350, 87-96.
    • (2002) Methods Enzymol , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2
  • 23
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by rna sequencing
    • Nagalakshmi, U., Wang, Z., Waern, K., Shou, C., Raha, D., Gerstein, M. and Snyder, M. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 320, 1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 24
    • 79961060611 scopus 로고    scopus 로고
    • Dynamic profiling of mrna turnover reveals gene-specific and system-wide regulation of mrna decay. Mol. Biol
    • Munchel, S. E., Shultzaberger, R. K., Takizawa, N. and Weis, K. (2011) Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay. Mol. Biol. Cell, 22, 2787-2795.
    • (2011) Cell , Issue.22 , pp. 2787-2795
    • Munchel, S.1    Shultzaberger, R.2    Takizawa, N.3    Weis, K.4
  • 25
    • 84871523350 scopus 로고    scopus 로고
    • A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress
    • Brandman, O., Stewart-Ornstein, J., Wong, D., Larson, A., Williams, C. C., Li, G. W., Zhou, S., King, D., Shen, P. S., Weibezahn, J. et al. (2012) A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Cell, 151, 1042-1054.
    • (2012) Cell , Issue.151 , pp. 1042-1054
    • Brandman, O.1    Stewart-Ornstein, J.2    Wong, D.3    Larson, A.4    Williams, C.5    Li, G.6    Zhou, S.7    King, D.8    Shen, P.9    Weibezahn, J.10
  • 26
    • 0032961476 scopus 로고    scopus 로고
    • Deletion of new covalently linked cell wall glycoproteins alters the electrophoretic mobility of phosphorylated wall components of saccharomyces cerevisiae
    • Mrsa, V., Ecker, M., Strahl-Bolsinger, S., Nimtz, M., Lehle, L. and Tanner, W. (1999) Deletion of new covalently linked cell wall glycoproteins alters the electrophoretic mobility of phosphorylated wall components of Saccharomyces cerevisiae. J. Bacteriol., 181, 3076-3086.
    • (1999) J. Bacteriol , vol.181 , pp. 3076-3086
    • Mrsa, V.1    Ecker, M.2    Strahl-Bolsinger, S.3    Nimtz, M.4    Lehle, L.5    Tanner, W.6
  • 27
    • 0030970378 scopus 로고    scopus 로고
    • The dan1 gene of s. Cerevisiae is regulated in parallel with the hypoxic genes, but by a different mechanism
    • Sertil, O., Cohen, B. D., Davies, K. J. and Lowry, C. V. (1997) The DAN1 gene of S. cerevisiae is regulated in parallel with the hypoxic genes, but by a different mechanism. Gene, 192, 199-205.
    • (1997) Gene , vol.192 , pp. 199-205
    • Sertil, O.1    Cohen, B.2    Davies, K.J.3    Lowry, C.V.4
  • 28
    • 0024635860 scopus 로고
    • Hop1: A yeast meiotic pairing gene
    • Hollingsworth, N. M. and Byers, B. (1989) HOP1: a yeast meiotic pairing gene. Genetics, 121, 445-462.
    • (1989) Genetics , vol.121 , pp. 445-462
    • Hollingsworth, N.M.1    Byers, B.2
  • 29
    • 0032493921 scopus 로고    scopus 로고
    • The meiosis-specific hop2 protein of s. Cerevisiae ensures synapsis between homologous chromosomes
    • Leu, J. Y., Chua, P. R. and Roeder, G. S. (1998) The meiosis-specific Hop2 protein of S. cerevisiae ensures synapsis between homologous chromosomes. Cell, 94, 375-386.
    • (1998) Cell , vol.94 , pp. 375-386
    • Leu, J.1    Chua, P.R.2    Roeder, G.S.3
  • 30
    • 0021278372 scopus 로고
    • Distinctly regulated tandem upstream activation sites mediate catabolite repression of the cyc1 gene of s. Cerevisiae
    • Guarente, L., Lalonde, B., Gifford, P. and Alani, E. (1984) Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae. Cell, 36, 503-511.
    • (1984) Cell , vol.36 , pp. 503-511
    • Guarente, L.1    Lalonde, B.2    Gifford, P.3    Alani, E.4
  • 31
    • 17644419994 scopus 로고    scopus 로고
    • Directed evolution of specific receptor-ligand pairs for use in the creation of gene switches
    • Chockalingam, K., Chen, Z., Katzenellenbogen, J. A. and Zhao, H. (2005) Directed evolution of specific receptor-ligand pairs for use in the creation of gene switches. Proc. Natl Acad. Sci. USA, 102, 5691-5696.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 5691-5696
    • Chockalingam, K.1    Chen, Z.2    Katzenellenbogen, J.A.3    Zhao, H.4
  • 32
    • 70349675511 scopus 로고    scopus 로고
    • Directed evolution of orthogonal ligand specificity in a single scaffold
    • McLachlan, M. J., Chockalingam, K., Lai, K. C. and Zhao, H. (2009) Directed evolution of orthogonal ligand specificity in a single scaffold. Angew. Chem. Int. Ed. Engl., 48, 7783-7786.
    • (2009) Angew. Chem. Int. Ed. Engl , vol.48 , pp. 7783-7786
    • McLachlan, M.1    Chockalingam, K.2    Lai, K.C.3    Zhao, H.4
  • 34
    • 4043048739 scopus 로고    scopus 로고
    • Directed evolution of human estrogen receptor variants with significantly enhanced androgen specificity and affinity
    • Chen, Z., Katzenellenbogen, B. S., Katzenellenbogen, J. A. and Zhao, H. (2004) Directed evolution of human estrogen receptor variants with significantly enhanced androgen specificity and affinity. J. Biol. Chem., 279, 33855-33864.
    • (2004) J. Biol. Chem , vol.279 , pp. 33855-33864
    • Chen, Z.1    Katzenellenbogen, B.2    Katzenellenbogen, J.A.3    Zhao, H.4
  • 35
    • 0023615620 scopus 로고
    • Plasmid construction by homologous recombination in yeast
    • Ma, H., Kunes, S., Schatz, P. J. and Botstein, D. (1987) Plasmid construction by homologous recombination in yeast. Gene, 58, 201-216.
    • (1987) Gene , vol.58 , pp. 201-216
    • Ma, H.1    Kunes, S.2    Schatz, P.J.3    Botstein, D.4
  • 36
    • 59649108349 scopus 로고    scopus 로고
    • Dna assembler, an in vivo genetic method for rapid construction of biochemical pathways
    • Shao, Z., Zhao, H. and Zhao, H. (2009) DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res., 37, e16.
    • (2009) Nucleic Acids Res , vol.37
    • Shao, Z.1    Zhao, H.2    Zhao, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.