메뉴 건너뛰기




Volumn 35, Issue 2, 2017, Pages 164-172

Influence of node abundance on signaling network state and dynamics analyzed by mass cytometry

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; COMPLEX NETWORKS; DISEASE CONTROL; DRUG THERAPY; DYNAMICS; PROTEINS; SIGNAL TRANSDUCTION; SIGNALING;

EID: 85012154582     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.3770     Document Type: Article
Times cited : (39)

References (55)
  • 1
    • 33750696663 scopus 로고    scopus 로고
    • Effects of HER2 overexpression on cell signaling networks governing proliferation and migration
    • Wolf-Yadlin, A. et al. Effects of HER2 overexpression on cell signaling networks governing proliferation and migration. Mol. Syst. Biol. 2, 54 (2006).
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 54
    • Wolf-Yadlin, A.1
  • 2
    • 84942531803 scopus 로고    scopus 로고
    • Hallmarks of pluripotency
    • De Los Angeles, A. et al. Hallmarks of pluripotency. Nature 525, 469-478 (2015).
    • (2015) Nature , vol.525 , pp. 469-478
    • De Los Angeles, A.1
  • 3
    • 34249275353 scopus 로고    scopus 로고
    • Phenotypic plasticity and the epigenetics of human disease
    • Feinberg, A.P. Phenotypic plasticity and the epigenetics of human disease. Nature 447, 433-440 (2007).
    • (2007) Nature , vol.447 , pp. 433-440
    • Feinberg, A.P.1
  • 4
    • 84876884110 scopus 로고    scopus 로고
    • Dysregulation of the basal RNA polymerase transcription apparatus in cancer
    • Bywater, M.J., Pearson, R.B., McArthur, G.A. & Hannan, R.D. Dysregulation of the basal RNA polymerase transcription apparatus in cancer. Nat. Rev. Cancer 13, 299-314 (2013).
    • (2013) Nat. Rev. Cancer , vol.13 , pp. 299-314
    • Bywater, M.J.1    Pearson, R.B.2    McArthur, G.A.3    Hannan, R.D.4
  • 7
    • 33847417986 scopus 로고    scopus 로고
    • Overexpression of Akt converts radial growth melanoma to vertical growth melanoma
    • Govindarajan, B. et al. Overexpression of Akt converts radial growth melanoma to vertical growth melanoma. J. Clin. Invest. 117, 719-729 (2007).
    • (2007) J. Clin. Invest. , vol.117 , pp. 719-729
    • Govindarajan, B.1
  • 8
    • 41549153733 scopus 로고    scopus 로고
    • MAPK overexpression is associated with anthracycline resistance and increased risk for recurrence in patients with triple-negative breast cancer
    • Eralp, Y. et al. MAPK overexpression is associated with anthracycline resistance and increased risk for recurrence in patients with triple-negative breast cancer. Ann. Oncol. 19, 669-674 (2008).
    • (2008) Ann. Oncol. , vol.19 , pp. 669-674
    • Eralp, Y.1
  • 9
    • 84939170655 scopus 로고    scopus 로고
    • PTPN11/Shp2 overexpression enhances liver cancer progression and predicts poor prognosis of patients
    • Han, T. et al. PTPN11/Shp2 overexpression enhances liver cancer progression and predicts poor prognosis of patients. J. Hepatol. 63, 651-660 (2015).
    • (2015) J. Hepatol. , vol.63 , pp. 651-660
    • Han, T.1
  • 10
    • 18444374405 scopus 로고    scopus 로고
    • Mutations of the BRAF gene in human cancer
    • Davies, H. et al. Mutations of the BRAF gene in human cancer. Nature 417, 949-954 (2002).
    • (2002) Nature , vol.417 , pp. 949-954
    • Davies, H.1
  • 11
    • 84941749221 scopus 로고    scopus 로고
    • Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines
    • Wang, M., Herrmann, C.J., Simonovic, M., Szklarczyk, D. & von Mering, C. Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. Proteomics 15, 3163-3168 (2015).
    • (2015) Proteomics , vol.15 , pp. 3163-3168
    • Wang, M.1    Herrmann, C.J.2    Simonovic, M.3    Szklarczyk, D.4    Von Mering, C.5
  • 12
    • 33745828702 scopus 로고    scopus 로고
    • EGF-ERBB signalling: Towards the systems level
    • Citri, A. & Yarden, Y. EGF-ERBB signalling: towards the systems level. Nat. Rev. Mol. Cell Biol. 7, 505-516 (2006).
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 505-516
    • Citri, A.1    Yarden, Y.2
  • 13
    • 84883179862 scopus 로고    scopus 로고
    • Targeting the ERBB family in cancer: Couples therapy
    • Tebbutt, N., Pedersen, M.W. & Johns, T.G. Targeting the ERBB family in cancer: couples therapy. Nat. Rev. Cancer 13, 663-673 (2013).
    • (2013) Nat. Rev. Cancer , vol.13 , pp. 663-673
    • Tebbutt, N.1    Pedersen, M.W.2    Johns, T.G.3
  • 14
    • 34248591612 scopus 로고    scopus 로고
    • Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer
    • Roberts, P.J. & Der, C.J. Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer. Oncogene 26, 3291-3310 (2007).
    • (2007) Oncogene , vol.26 , pp. 3291-3310
    • Roberts, P.J.1    Der, C.J.2
  • 15
    • 79958026380 scopus 로고    scopus 로고
    • The Ras-ERK and PI3K-mTOR pathways: Cross-talk and compensation
    • Mendoza, M.C., Er, E.E. & Blenis, J. The Ras-ERK and PI3K-mTOR pathways: cross-talk and compensation. Trends Biochem. Sci. 36, 320-328 (2011).
    • (2011) Trends Biochem. Sci. , vol.36 , pp. 320-328
    • Mendoza, M.C.1    Er, E.E.2    Blenis, J.3
  • 16
    • 0034600849 scopus 로고    scopus 로고
    • The ErbB signaling network: Receptor heterodimerization in development and cancer
    • Olayioye, M.A., Neve, R.M., Lane, H.A. & Hynes, N.E. The ErbB signaling network: receptor heterodimerization in development and cancer. EMBO J. 19, 3159-3167 (2000).
    • (2000) EMBO J. , vol.19 , pp. 3159-3167
    • Olayioye, M.A.1    Neve, R.M.2    Lane, H.A.3    Hynes, N.E.4
  • 17
    • 34250788809 scopus 로고    scopus 로고
    • AKT/PKB signaling: Navigating downstream
    • Manning, B.D. & Cantley, L.C. AKT/PKB signaling: navigating downstream. Cell 129, 1261-1274 (2007).
    • (2007) Cell , vol.129 , pp. 1261-1274
    • Manning, B.D.1    Cantley, L.C.2
  • 19
    • 31144470222 scopus 로고    scopus 로고
    • PKC isozymes and diacylglycerol-regulated proteins as effectors of growth factor receptors
    • Oliva, J.L., Griner, E.M. & Kazanietz, M.G. PKC isozymes and diacylglycerol-regulated proteins as effectors of growth factor receptors. Growth Factors 23, 245-252 (2005).
    • (2005) Growth Factors , vol.23 , pp. 245-252
    • Oliva, J.L.1    Griner, E.M.2    Kazanietz, M.G.3
  • 20
    • 34447122100 scopus 로고    scopus 로고
    • A hidden oncogenic positive feedback loop caused by crosstalk between Wnt and ERK pathways
    • Kim, D., Rath, O., Kolch, W. & Cho, K.-H. A hidden oncogenic positive feedback loop caused by crosstalk between Wnt and ERK pathways. Oncogene 26, 4571-4579 (2007).
    • (2007) Oncogene , vol.26 , pp. 4571-4579
    • Kim, D.1    Rath, O.2    Kolch, W.3    Cho, K.-H.4
  • 21
    • 0347991862 scopus 로고    scopus 로고
    • Integration of Smad and MAPK pathways: A link and a linker revisited
    • Massague, J. Integration of Smad and MAPK pathways: a link and a linker revisited. Genes Dev. 17, 2993-2997 (2003).
    • (2003) Genes Dev. , vol.17 , pp. 2993-2997
    • Massague, J.1
  • 22
    • 26844576371 scopus 로고    scopus 로고
    • Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules
    • Zhang, Y. et al. Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Mol. Cell. Proteomics 4, 1240-1250 (2005).
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1240-1250
    • Zhang, Y.1
  • 23
    • 84864867582 scopus 로고    scopus 로고
    • AMP-activated protein kinase-α1 as an activating kinase of TGF-β-activated kinase 1 has a key role in infammatory signals
    • Kim, S.Y. et al. AMP-activated protein kinase-α1 as an activating kinase of TGF-β-activated kinase 1 has a key role in infammatory signals. Cell Death Dis. 3, e357 (2012).
    • (2012) Cell Death Dis. , vol.3 , pp. e357
    • Kim, S.Y.1
  • 24
    • 84872387485 scopus 로고    scopus 로고
    • Synthetic lethal interaction of combined BCL-XL and MEK inhibition promotes tumor regressions in KRAS mutant cancer models
    • Corcoran, R.B. et al. Synthetic lethal interaction of combined BCL-XL and MEK inhibition promotes tumor regressions in KRAS mutant cancer models. Cancer Cell 23, 121-128 (2013).
    • (2013) Cancer Cell , vol.23 , pp. 121-128
    • Corcoran, R.B.1
  • 25
    • 10744231500 scopus 로고    scopus 로고
    • Systematic interactome mapping and genetic perturbation analysis of a C. Elegans TGF-β signaling network
    • Tewari, M. et al. Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-β signaling network. Mol. Cell 13, 469-482 (2004).
    • (2004) Mol. Cell , vol.13 , pp. 469-482
    • Tewari, M.1
  • 26
    • 84881236485 scopus 로고    scopus 로고
    • Specifc interactions between Smad proteins and AP-1 components determine TGFβ-induced breast cancer cell invasion
    • Sundqvist, A. et al. Specifc interactions between Smad proteins and AP-1 components determine TGFβ-induced breast cancer cell invasion. Oncogene 32, 3606-3615 (2013).
    • (2013) Oncogene , vol.32 , pp. 3606-3615
    • Sundqvist, A.1
  • 27
    • 84888202081 scopus 로고    scopus 로고
    • Stochastic ERK activation induced by noise and cell-to-cell propagation regulates cell density-dependent proliferation
    • Aoki, K. et al. Stochastic ERK activation induced by noise and cell-to-cell propagation regulates cell density-dependent proliferation. Mol. Cell 52, 529-540 (2013).
    • (2013) Mol. Cell , vol.52 , pp. 529-540
    • Aoki, K.1
  • 28
    • 84866096861 scopus 로고    scopus 로고
    • Multiplexed mass cytometry profling of cellular states perturbed by small-molecule regulators
    • Bodenmiller, B. et al. Multiplexed mass cytometry profling of cellular states perturbed by small-molecule regulators. Nat. Biotechnol. 30, 858-867 (2012).
    • (2012) Nat. Biotechnol. , vol.30 , pp. 858-867
    • Bodenmiller, B.1
  • 29
    • 79955750055 scopus 로고    scopus 로고
    • Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
    • Bendall, S.C. et al. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 332, 687-696 (2011).
    • (2011) Science , vol.332 , pp. 687-696
    • Bendall, S.C.1
  • 30
    • 84914127300 scopus 로고    scopus 로고
    • Systems biology. Conditional density-based analysis of T cell signaling in single-cell data
    • Krishnaswamy, S. et al. Systems biology. Conditional density-based analysis of T cell signaling in single-cell data. Science 346, 1250689 (2014).
    • (2014) Science , vol.346 , pp. 1250689
    • Krishnaswamy, S.1
  • 31
    • 84888100485 scopus 로고    scopus 로고
    • Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions
    • Couzens, A.L. et al. Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions. Sci. Signal. 6, rs15 (2013).
    • (2013) Sci. Signal. , vol.6 , pp. rs15
    • Couzens, A.L.1
  • 32
    • 74049163724 scopus 로고    scopus 로고
    • Chimeric mouse tumor models reveal differences in pathway activation between ERBB family-and KRAS-dependent lung adenocarcinomas
    • Zhou, Y. et al. Chimeric mouse tumor models reveal differences in pathway activation between ERBB family-and KRAS-dependent lung adenocarcinomas. Nat. Biotechnol. 28, 71-78 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 71-78
    • Zhou, Y.1
  • 33
    • 84874030016 scopus 로고    scopus 로고
    • FACS analysis of Stat3/5 signaling reveals sensitivity to G-CSF and IL-6 as a signifcant prognostic factor in pediatric AML: A Children's Oncology Group report
    • Redell, M.S. et al. FACS analysis of Stat3/5 signaling reveals sensitivity to G-CSF and IL-6 as a signifcant prognostic factor in pediatric AML: a Children's Oncology Group report. Blood 121, 1083-1093 (2013).
    • (2013) Blood , vol.121 , pp. 1083-1093
    • Redell, M.S.1
  • 34
    • 84976871607 scopus 로고    scopus 로고
    • SIGNOR: A database of causal relationships between biological entities
    • Perfetto, L. et al. SIGNOR: a database of causal relationships between biological entities. Nucleic Acids Res. 44, D548-D554 (2016).
    • (2016) Nucleic Acids Res. , vol.44 , pp. D548-D554
    • Perfetto, L.1
  • 35
    • 84901231782 scopus 로고    scopus 로고
    • Emerging roles of the p38 MAPK and PI3K/AKT/mTOR pathways in oncogene-induced senescence
    • Xu, Y., Li, N., Xiang, R. & Sun, P. Emerging roles of the p38 MAPK and PI3K/AKT/mTOR pathways in oncogene-induced senescence. Trends Biochem. Sci. 39, 268-276 (2014).
    • (2014) Trends Biochem. Sci. , vol.39 , pp. 268-276
    • Xu, Y.1    Li, N.2    Xiang, R.3    Sun, P.4
  • 36
    • 84879949593 scopus 로고    scopus 로고
    • KRAS and MAPK1 gene amplifcation in type II ovarian carcinomas
    • Rahman, M.T. et al. KRAS and MAPK1 gene amplifcation in type II ovarian carcinomas. Int. J. Mol. Sci. 14, 13748-13762 (2013).
    • (2013) Int. J. Mol. Sci. , vol.14 , pp. 13748-13762
    • Rahman, M.T.1
  • 37
    • 84879240684 scopus 로고    scopus 로고
    • KRAS gene amplifcation in colorectal cancer and impact on response to EGFR-targeted therapy
    • Valtorta, E. et al. KRAS gene amplifcation in colorectal cancer and impact on response to EGFR-targeted therapy. Int. J. Cancer 133, 1259-1265 (2013).
    • (2013) Int. J. Cancer , vol.133 , pp. 1259-1265
    • Valtorta, E.1
  • 38
    • 77957328515 scopus 로고    scopus 로고
    • MET and KRAS gene amplifcation mediates acquired resistance to MET tyrosine kinase inhibitors
    • Cepero, V. et al. MET and KRAS gene amplifcation mediates acquired resistance to MET tyrosine kinase inhibitors. Cancer Res. 70, 7580-7590 (2010).
    • (2010) Cancer Res. , vol.70 , pp. 7580-7590
    • Cepero, V.1
  • 39
    • 79953240219 scopus 로고    scopus 로고
    • Amplifcation of the driving oncogene, KRAS or BRAF, underpins acquired resistance to MEK1/2 inhibitors in colorectal cancer cells
    • Little, A.S. et al. Amplifcation of the driving oncogene, KRAS or BRAF, underpins acquired resistance to MEK1/2 inhibitors in colorectal cancer cells. Sci. Signal. 4, ra17 (2011).
    • (2011) Sci. Signal. , vol.4 , pp. ra17
    • Little, A.S.1
  • 41
    • 17644367566 scopus 로고    scopus 로고
    • H-Ras-specifc activation of Rac-MKK3/6-p38 pathway: Its critical role in invasion and migration of breast epithelial cells
    • Shin, I., Kim, S., Song, H., Kim, H.-R.C. & Moon, A. H-Ras-specifc activation of Rac-MKK3/6-p38 pathway: its critical role in invasion and migration of breast epithelial cells. J. Biol. Chem. 280, 14675-14683 (2005).
    • (2005) J. Biol. Chem. , vol.280 , pp. 14675-14683
    • Shin, I.1    Kim, S.2    Song, H.3    Kim, H.-R.C.4    Moon, A.5
  • 42
    • 77449129447 scopus 로고    scopus 로고
    • Reciprocal negative regulation of PDK1 and ASK1 signaling by direct interaction and phosphorylation
    • Seong, H.-A., Jung, H., Ichijo, H. & Ha, H. Reciprocal negative regulation of PDK1 and ASK1 signaling by direct interaction and phosphorylation. J. Biol. Chem. 285, 2397-2414 (2010).
    • (2010) J. Biol. Chem. , vol.285 , pp. 2397-2414
    • Seong, H.-A.1    Jung, H.2    Ichijo, H.3    Ha, H.4
  • 43
    • 77951887248 scopus 로고    scopus 로고
    • Induction of apoptosis by quercetin is mediated through AMPKalpha1/ASK1/p38 pathway
    • Lee, Y.-K., Hwang, J.-T., Kwon, D.Y., Surh, Y.-J. & Park, O.J. Induction of apoptosis by quercetin is mediated through AMPKalpha1/ASK1/p38 pathway. Cancer Lett. 292, 228-236 (2010).
    • (2010) Cancer Lett. , vol.292 , pp. 228-236
    • Lee, Y.-K.1    Hwang, J.-T.2    Kwon, D.Y.3    Surh, Y.-J.4    Park, O.J.5
  • 44
    • 84862849835 scopus 로고    scopus 로고
    • Redox implications of AMPK-mediated signal transduction beyond energetic clues
    • Cardaci, S., Filomeni, G. & Ciriolo, M.R. Redox implications of AMPK-mediated signal transduction beyond energetic clues. J. Cell Sci. 125, 2115-2125 (2012).
    • (2012) J. Cell Sci. , vol.125 , pp. 2115-2125
    • Cardaci, S.1    Filomeni, G.2    Ciriolo, M.R.3
  • 47
  • 48
    • 84897055483 scopus 로고    scopus 로고
    • Targeting Bruton's tyrosine kinase in B cell malignancies
    • Hendriks, R.W., Yuvaraj, S. & Kil, L.P. Targeting Bruton's tyrosine kinase in B cell malignancies. Nat. Rev. Cancer 14, 219-232 (2014).
    • (2014) Nat. Rev. Cancer , vol.14 , pp. 219-232
    • Hendriks, R.W.1    Yuvaraj, S.2    Kil, L.P.3
  • 49
    • 54449101472 scopus 로고    scopus 로고
    • Shp2 negatively regulates growth in cardiomyocytes by controlling focal adhesion kinase/Src and mTOR pathways
    • Marin, T.M. et al. Shp2 negatively regulates growth in cardiomyocytes by controlling focal adhesion kinase/Src and mTOR pathways. Circ. Res. 103, 813-824 (2008).
    • (2008) Circ. Res. , vol.103 , pp. 813-824
    • Marin, T.M.1
  • 50
    • 84904337365 scopus 로고    scopus 로고
    • Regulatory role of the JNK-STAT1/3 signaling in neuronal differentiation of cultured mouse embryonic stem cells
    • Wei, Z.Z. et al. Regulatory role of the JNK-STAT1/3 signaling in neuronal differentiation of cultured mouse embryonic stem cells. Cell. Mol. Neurobiol. 34, 881-893 (2014).
    • (2014) Cell. Mol. Neurobiol. , vol.34 , pp. 881-893
    • Wei, Z.Z.1
  • 51
    • 79960987021 scopus 로고    scopus 로고
    • A public genome-scale lentiviral expression library of human ORFs
    • Yang, X. et al. A public genome-scale lentiviral expression library of human ORFs. Nat. Methods 8, 659-661 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 659-661
    • Yang, X.1
  • 52
    • 84876799270 scopus 로고    scopus 로고
    • Normalization of mass cytometry data with bead standards
    • Finck, R. et al. Normalization of mass cytometry data with bead standards. Cytometry A 83, 483-494 (2013).
    • (2013) Cytometry A , vol.83 , pp. 483-494
    • Finck, R.1
  • 53
    • 84924234154 scopus 로고    scopus 로고
    • Palladium-based mass tag cell barcoding with a doublet-fltering scheme and single-cell deconvolution algorithm
    • Zunder, E.R. et al. Palladium-based mass tag cell barcoding with a doublet-fltering scheme and single-cell deconvolution algorithm. Nat. Protoc. 10, 316-333 (2015).
    • (2015) Nat. Protoc. , vol.10 , pp. 316-333
    • Zunder, E.R.1
  • 54
    • 84944178665 scopus 로고
    • Hierarchical grouping to optimize an objective function
    • Ward, J.H. Hierarchical grouping to optimize an objective function. J. Am. Stat. Assoc. 58, 236-244 (1963).
    • (1963) J. Am. Stat. Assoc. , vol.58 , pp. 236-244
    • Ward, J.H.1
  • 55
    • 67249148362 scopus 로고    scopus 로고
    • Exploring network structure dynamics and function using NetworkX
    • Hagberg, A.A., Schult, D.A. & Swart, P.J. Exploring network structure, dynamics, and function using NetworkX. Proc. 7th Python Sci. Conf. 2008, 11-15 (2008).
    • (2008) Proc. 7th Python Sci. Conf. , vol.2008 , pp. 11-15
    • Hagberg, A.A.1    Schult, D.A.2    Swart, P.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.