-
1
-
-
84901466274
-
Perilous journey: A tour of the ubiquitin-proteasome system
-
Kleiger, G. & Mayor, T. Perilous journey: a tour of the ubiquitin-proteasome system. Trends in cell biology 24, 352-359, doi: 10.1016/j.tcb.2013.12.003 (2014).
-
(2014)
Trends in Cell Biology
, vol.24
, pp. 352-359
-
-
Kleiger, G.1
Mayor, T.2
-
2
-
-
84880931087
-
Deubiquitylases from genes to organism
-
Clague, M. J. et al. Deubiquitylases from genes to organism. Physiological reviews 93, 1289-1315, doi: 10.1152/physrev.00002.2013 (2013).
-
(2013)
Physiological Reviews
, vol.93
, pp. 1289-1315
-
-
Clague, M.J.1
-
4
-
-
63649113699
-
Origin and function of ubiquitin-like proteins
-
Hochstrasser, M. Origin and function of ubiquitin-like proteins. Nature 458, 422-429, doi: 10.1038/nature07958 (2009).
-
(2009)
Nature
, vol.458
, pp. 422-429
-
-
Hochstrasser, M.1
-
6
-
-
79751469547
-
NEDD8 pathways in cancer, Sine Quibus Non
-
Watson, I. R., Irwin, M. S. & Ohh, M. NEDD8 pathways in cancer, Sine Quibus Non. Cancer cell 19, 168-176, doi: 10.1016/j. ccr.2011.01.002 (2011).
-
(2011)
Cancer Cell
, vol.19
, pp. 168-176
-
-
Watson, I.R.1
Irwin, M.S.2
Ohh, M.3
-
7
-
-
84878944582
-
Sumoylation: A regulatory protein modifcation in health and disease
-
Flotho, A. & Melchior, F. Sumoylation: a regulatory protein modifcation in health and disease. Annual review of biochemistry 82, 357-385, doi: 10.1146/annurev-biochem-061909-093311 (2013).
-
(2013)
Annual Review of Biochemistry
, vol.82
, pp. 357-385
-
-
Flotho, A.1
Melchior, F.2
-
8
-
-
3543046736
-
A functional variant of SUMO4, a new i kappa B alpha modifer, is associated with type 1 diabetes
-
Guo, D. et al. A functional variant of SUMO4, a new I kappa B alpha modifer, is associated with type 1 diabetes. Nature genetics 36, 837-841, doi: 10.1038/ng1391 (2004).
-
(2004)
Nature Genetics
, vol.36
, pp. 837-841
-
-
Guo, D.1
-
9
-
-
50849095506
-
A stress-dependent SUMO4 sumoylation of its substrate proteins
-
Wei, W. et al. A stress-dependent SUMO4 sumoylation of its substrate proteins. Biochemical and biophysical research communications 375, 454-459, doi: 10.1016/j.bbrc.2008.08.028 (2008).
-
(2008)
Biochemical and Biophysical Research Communications
, vol.375
, pp. 454-459
-
-
Wei, W.1
-
10
-
-
84971300409
-
SUMO5, a Novel Poly-SUMO Isoform, Regulates PML Nuclear Bodies
-
Liang, Y. C. et al. SUMO5, a Novel Poly-SUMO Isoform, Regulates PML Nuclear Bodies. Scientifc reports 6, 26509, doi: 10.1038/ srep26509 (2016).
-
(2016)
Scientifc Reports
, vol.6
, pp. 26509
-
-
Liang, Y.C.1
-
11
-
-
77950368491
-
ISG15 and immune diseases
-
Jeon, Y. J., Yoo, H. M. & Chung, C. H. ISG15 and immune diseases. Biochimica et biophysica acta 1802, 485-496, doi: 10.1016/j. bbadis.2010.02.006 (2010).
-
(2011)
Biochimica et Biophysica Acta
, pp. 485-496
-
-
Jeon, Y.J.1
Yoo, H.M.2
Chung, C.H.3
-
12
-
-
80052764047
-
FAT10: Activated by UBA6 and Functioning in Protein Degradation
-
Pelzer, C. & Groettrup, M. FAT10: Activated by UBA6 and Functioning in Protein Degradation. Sub-cellular biochemistry 54, 238-246, doi: 10.1007/978-1-4419-6676-6-19 (2010).
-
(2010)
Sub-cellular Biochemistry
, vol.54
, pp. 238-246
-
-
Pelzer, C.1
Groettrup, M.2
-
13
-
-
17644376207
-
FAT10, a ubiquitin-independent signal for proteasomal degradation
-
Hipp, M. S., Kalveram, B., Raasi, S., Groettrup, M. & Schmidtke, G. FAT10, a ubiquitin-independent signal for proteasomal degradation. Molecular and cellular biology 25, 3483-3491, doi: 10.1128/MCB.25.9.3483-3491.2005 (2005).
-
(2005)
Molecular and Cellular Biology
, vol.25
, pp. 3483-3491
-
-
Hipp, M.S.1
Kalveram, B.2
Raasi, S.3
Groettrup, M.4
Schmidtke, G.5
-
14
-
-
84973558739
-
UFMylation: A unique & fashionable modifcation for life
-
Wei, Y. & Xu, X. UFMylation: A Unique & Fashionable Modifcation for Life. Genomics Proteomics Bioinformatics, doi: 10.1016/j. gpb.2016.04.001 (2016).
-
(2016)
Genomics Proteomics Bioinformatics
-
-
Wei, Y.1
Xu, X.2
-
15
-
-
51049118332
-
The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. ' Protein modifcations: Beyond the usual suspects' review series
-
Geng, J. & Klionsky, D. J. The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. 'Protein modifcations: beyond the usual suspects' review series. EMBO reports 9, 859-864, doi: 10.1038/embor.2008.163 (2008).
-
(2008)
EMBO Reports
, vol.9
, pp. 859-864
-
-
Geng, J.1
Klionsky, D.J.2
-
16
-
-
0032588118
-
Ubiquitin-like polypeptide inhibits the proliferative response of T cells in vivo
-
Kondoh, T., Nakamura, M., Nabika, T., Yoshimura, Y. & Tanigawa, Y. Ubiquitin-like polypeptide inhibits the proliferative response of T cells in vivo. Immunobiology 200, 140-149, doi: 10.1016/S0171-2985(99)80039-4 (1999).
-
(1999)
Immunobiology
, vol.200
, pp. 140-149
-
-
Kondoh, T.1
Nakamura, M.2
Nabika, T.3
Yoshimura, Y.4
Tanigawa, Y.5
-
17
-
-
80053067622
-
The dual role of ubiquitin-like protein Urm1 as a protein modifer and sulfur carrier
-
Wang, F., Liu, M., Qiu, R. & Ji, C. The dual role of ubiquitin-like protein Urm1 as a protein modifer and sulfur carrier. Protein Cell 2, 612-619, doi: 10.1007/s13238-011-1074-6 (2011).
-
(2011)
Protein Cell
, vol.2
, pp. 612-619
-
-
Wang, F.1
Liu, M.2
Qiu, R.3
Ji, C.4
-
18
-
-
70449084692
-
Efcient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities
-
Hjerpe, R. et al. Efcient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities. EMBO reports 10, 1250-1258, doi: 10.1038/embor.2009.192 (2009).
-
(2009)
EMBO Reports
, vol.10
, pp. 1250-1258
-
-
Hjerpe, R.1
-
19
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoafnity profling
-
Xu, G., Paige, J. S. & Jafrey, S. R. Global analysis of lysine ubiquitination by ubiquitin remnant immunoafnity profling. Nature biotechnology 28, 868-873, doi: 10.1038/nbt.1654 (2010).
-
(2010)
Nature Biotechnology
, vol.28
, pp. 868-873
-
-
Xu, G.1
Paige, J.S.2
Jafrey, S.R.3
-
20
-
-
84942991847
-
Mapping the SUMOylated landscape
-
Eifer, K. & Vertegaal, A. C. Mapping the SUMOylated landscape. The FEBS journal 282, 3669-3680, doi: 10.1111/febs.13378 (2015).
-
(2015)
The FEBS Journal
, vol.282
, pp. 3669-3680
-
-
Eifer, K.1
Vertegaal, A.C.2
-
21
-
-
84899759007
-
Proteome-wide identification of SUMO2 modification sites
-
Tammsalu, T. et al. Proteome-wide identification of SUMO2 modification sites. Science signaling 7, rs2, doi: 10.1126/ scisignal.2005146 (2014).
-
(2014)
Science Signaling
, vol.7
, pp. rs2
-
-
Tammsalu, T.1
-
22
-
-
84931282084
-
System-wide identification of wild-type SUMO-2 conjugation sites
-
Hendriks, I. A., D'Souza, R. C., Chang, J. G., Mann, M. & Vertegaal, A. C. System-wide identification of wild-type SUMO-2 conjugation sites. Nature communications 6, 7289, doi: 10.1038/ncomms8289 (2015).
-
(2015)
Nature Communications
, vol.6
, pp. 7289
-
-
Hendriks, I.A.1
D'Souza, R.C.2
Chang, J.G.3
Mann, M.4
Vertegaal, A.C.5
-
23
-
-
84876164814
-
Detecting endogenous SUMO targets in mammalian cells and tissues
-
Becker, J. et al. Detecting endogenous SUMO targets in mammalian cells and tissues. Nature structural & molecular biology 20, 525-531, doi: 10.1038/nsmb.2526 (2013).
-
(2013)
Nature Structural & Molecular Biology
, vol.20
, pp. 525-531
-
-
Becker, J.1
-
24
-
-
79551604903
-
Purifcation and identifcation of endogenous polySUMO conjugates
-
Bruderer, R. et al. Purifcation and identifcation of endogenous polySUMO conjugates. EMBO reports 12, 142-148, doi: 10.1038/ embor.2010.206 (2011).
-
(2011)
EMBO Reports
, vol.12
, pp. 142-148
-
-
Bruderer, R.1
-
25
-
-
84877733488
-
Analysis of SUMOylated proteins using SUMO-traps
-
Da Silva-Ferrada, E. et al. Analysis of SUMOylated proteins using SUMO-traps. Scientifc reports 3, 1690, doi: 10.1038/srep01690 (2013).
-
(2013)
Scientifc Reports
, vol.3
, pp. 1690
-
-
Da Silva-Ferrada, E.1
-
26
-
-
40249111681
-
Ribosomal proteins are targets for the NEDD8 pathway
-
Xirodimas, D. P. et al. Ribosomal proteins are targets for the NEDD8 pathway. EMBO reports 9, 280-286, doi: 10.1038/ embor.2008.10 (2008).
-
(2008)
EMBO Reports
, vol.9
, pp. 280-286
-
-
Xirodimas, D.P.1
-
27
-
-
44449129585
-
A targeted proteomic analysis of the ubiquitin-like modifer nedd8 and associated proteins
-
Jones, J. et al. A targeted proteomic analysis of the ubiquitin-like modifer nedd8 and associated proteins. Journal of proteome research 7, 1274-1287, doi: 10.1021/pr700749v (2008).
-
(2008)
Journal of Proteome Research
, vol.7
, pp. 1274-1287
-
-
Jones, J.1
-
28
-
-
33644701400
-
Analysis of Nedd8-associated polypeptides: A model for deciphering the pathway for ubiquitin-like modifcations
-
Norman, J. A. & Shiekhattar, R. Analysis of Nedd8-associated polypeptides: a model for deciphering the pathway for ubiquitin-like modifcations. Biochemistry 45, 3014-3019, doi: 10.1021/bi052435a (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 3014-3019
-
-
Norman, J.A.1
Shiekhattar, R.2
-
29
-
-
22544487172
-
Human ISG15 conjugation targets both IFN-induced and constitutively expressed proteins functioning in diverse cellular pathways
-
Zhao, C., Denison, C., Huibregtse, J. M., Gygi, S. & Krug, R. M. Human ISG15 conjugation targets both IFN-induced and constitutively expressed proteins functioning in diverse cellular pathways. Proceedings of the National Academy of Sciences of the United States of America 102, 10200-10205, doi: 10.1073/pnas.0504754102 (2005).
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 10200-10205
-
-
Zhao, C.1
Denison, C.2
Huibregtse, J.M.3
Gygi, S.4
Krug, R.M.5
-
30
-
-
84922329604
-
Modifcation of ASC1 by UFM1 is crucial for ERalpha transactivation and breast cancer development
-
Yoo, H. M. et al. Modifcation of ASC1 by UFM1 is crucial for ERalpha transactivation and breast cancer development. Molecular cell 56, 261-274, doi: 10.1016/j.molcel.2014.08.007 (2014).
-
(2014)
Molecular Cell
, vol.56
, pp. 261-274
-
-
Yoo, H.M.1
-
32
-
-
0032917076
-
A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation
-
Beckett, D., Kovaleva, E. & Schatz, P. J. A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation. Protein science: a publication of the Protein Society 8, 921-929, doi: 10.1110/ps.8.4.921 (1999).
-
(1999)
Protein Science: A Publication of the Protein Society
, vol.8
, pp. 921-929
-
-
Beckett, D.1
Kovaleva, E.2
Schatz, P.J.3
-
33
-
-
79955780605
-
A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development
-
Franco, M., Seyfried, N. T. , Brand, A. H., Peng, J. & Mayor, U. A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development. Molecular & cellular proteomics: MCP 10, M110 002188, doi: 10.1074/mcp.M110.002188 (2011).
-
(2011)
Molecular & Cellular Proteomics: MCP
, vol.10
, pp. M110
-
-
Franco, M.1
Seyfried, N.T.2
Brand, A.H.3
Peng, J.4
Mayor, U.5
-
34
-
-
84902105412
-
Ubiquitin profling in liver using a transgenic mouse with biotinylated ubiquitin
-
Lectez, B. et al. Ubiquitin profling in liver using a transgenic mouse with biotinylated ubiquitin. Journal of proteome research 13, 3016-3026, doi: 10.1021/pr5001913 (2014).
-
(2014)
Journal of Proteome Research
, vol.13
, pp. 3016-3026
-
-
Lectez, B.1
-
35
-
-
84858204874
-
Generation of stable Drosophila cell lines using multicistronic vectors
-
Gonzalez, M. et al. Generation of stable Drosophila cell lines using multicistronic vectors. Scientifc reports 1, 75, doi: 10.1038/ srep00075 (2011).
-
(2011)
Scientifc Reports
, vol.1
, pp. 75
-
-
Gonzalez, M.1
-
36
-
-
13544274323
-
Codon optimization of the BirA enzyme gene leads to higher expression and an improved efficiency of biotinylation of target proteins in mammalian cells
-
Mechold, U., Gilbert, C. & Ogryzko, V. Codon optimization of the BirA enzyme gene leads to higher expression and an improved efficiency of biotinylation of target proteins in mammalian cells. Journal of biotechnology 116, 245-249, doi: 10.1016/j. jbiotec.2004.12.003 (2005).
-
(2005)
Journal of Biotechnology
, vol.116
, pp. 245-249
-
-
Mechold, U.1
Gilbert, C.2
Ogryzko, V.3
-
37
-
-
67650115041
-
Genetic and proteomic evidence for roles of Drosophila SUMO in cell cycle control Ras signaling and early pattern formation
-
Nie, M., Xie, Y. , Loo, J. A. & Courey, A. J. Genetic and proteomic evidence for roles of Drosophila SUMO in cell cycle control, Ras signaling, and early pattern formation. PloS one 4, e5905, doi: 10.1371/journal.pone.0005905 (2009).
-
(2009)
PloS One
, vol.4
, pp. e5905
-
-
Nie, M.1
Xie, Y.2
Loo, J.A.3
Courey, A.J.4
-
39
-
-
84948798322
-
Proteomic analysis of the ubiquitin landscape in the drosophila embryonic nervous system and the adult photoreceptor cells
-
Ramirez, J. et al. Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells. PloS one 10, e0139083, doi: 10.1371/journal.pone.0139083 (2015).
-
(2015)
PloS One
, vol.10
, pp. e0139083
-
-
Ramirez, J.1
-
40
-
-
0032567759
-
Molecular characterization of the SUMO-1 modifcation of RanGAP1 and its role in nuclear envelope association
-
Mahajan, R., Gerace, L. & Melchior, F. Molecular characterization of the SUMO-1 modifcation of RanGAP1 and its role in nuclear envelope association. The Journal of cell biology 140, 259-270 (1998).
-
(1998)
The Journal of Cell Biology
, vol.140
, pp. 259-270
-
-
Mahajan, R.1
Gerace, L.2
Melchior, F.3
-
41
-
-
2942525287
-
Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc fnger proteins, and nuclear pore complex proteins: A proteomic analysis
-
Li, T. et al. Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc fnger proteins, and nuclear pore complex proteins: a proteomic analysis. Proceedings of the National Academy of Sciences of the United States of America 101, 8551-8556 (2004).
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 8551-8556
-
-
Li, T.1
-
42
-
-
0034054669
-
Functional heterogeneity of small ubiquitin-related protein modifers SUMO-1 versus SUMO-2/3
-
Saitoh, H. & Hinchey, J. Functional heterogeneity of small ubiquitin-related protein modifers SUMO-1 versus SUMO-2/3. The Journal of biological chemistry 275, 6252-6258 (2000).
-
(2000)
The Journal of Biological Chemistry
, vol.275
, pp. 6252-6258
-
-
Saitoh, H.1
Hinchey, J.2
-
43
-
-
67649173012
-
System-wide changes to SUMO modifcations in response to heat shock
-
Golebiowski, F. et al. System-wide changes to SUMO modifcations in response to heat shock. Science signaling 2, ra24, doi: 10.1126/ scisignal.2000282 (2009).
-
(2009)
Science Signaling
, vol.2
, pp. ra24
-
-
Golebiowski, F.1
-
44
-
-
84940540249
-
Proteome-wide identifcation of SUMO modifcation sites by mass spectrometry
-
Tammsalu, T. et al. Proteome-wide identifcation of SUMO modifcation sites by mass spectrometry. Nature protocols 10, 1374-1388, doi: 10.1038/nprot.2015.095 (2015).
-
(2015)
Nature Protocols
, vol.10
, pp. 1374-1388
-
-
Tammsalu, T.1
-
45
-
-
84869136860
-
Coflin nuclear-cytoplasmic shuttling afects coflin-actin rod formation during stress
-
Munsie, L. N., Desmond, C. R. & Truant, R. Coflin nuclear-cytoplasmic shuttling afects coflin-actin rod formation during stress. Journal of cell science 125, 3977-3988, doi: 10.1242/jcs.097667 (2012).
-
(2012)
Journal of Cell Science
, vol.125
, pp. 3977-3988
-
-
Munsie, L.N.1
Desmond, C.R.2
Truant, R.3
-
46
-
-
84907709107
-
Sumoylation modulates 20-hydroxyecdysone signaling by maintaining USP protein levels in Drosophila
-
Wang, J., Wang, S. & Li, S. Sumoylation modulates 20-hydroxyecdysone signaling by maintaining USP protein levels in Drosophila. Insect Biochem Mol Biol 54, 80-88, doi: 10.1016/j.ibmb.2014.09.003 (2014).
-
(2014)
Insect Biochem Mol Biol
, vol.54
, pp. 80-88
-
-
Wang, J.1
Wang, S.2
Li, S.3
-
47
-
-
84876439291
-
TnaA, an SP-RING protein, interacts with Osa, a subunit of the chromatin remodeling complex BRAHMA and with the SUMOylation pathway in Drosophila melanogaster
-
Monribot-Villanueva, J. et al. TnaA, an SP-RING protein, interacts with Osa, a subunit of the chromatin remodeling complex BRAHMA and with the SUMOylation pathway in Drosophila melanogaster. PloS one 8, e62251, doi: 10.1371/journal.pone.0062251 (2013).
-
(2013)
PloS One
, vol.8
, pp. e62251
-
-
Monribot-Villanueva, J.1
-
48
-
-
77953318097
-
HDAC2 promotes eIF4E sumoylation and activates mRNA translation gene specifcally
-
Xu, X., Vatsyayan, J., Gao, C., Bakkenist, C. J. & Hu, J. HDAC2 promotes eIF4E sumoylation and activates mRNA translation gene specifcally. The Journal of biological chemistry 285, 18139-18143, doi: 10.1074/jbc.C110.131599 (2010).
-
(2010)
The Journal of Biological Chemistry
, vol.285
, pp. 18139-18143
-
-
Xu, X.1
Vatsyayan, J.2
Gao, C.3
Bakkenist, C.J.4
Hu, J.5
-
49
-
-
84876876980
-
Scavenger receptors mediate the role of SUMO and Ftz-f1 in Drosophila steroidogenesis
-
Talamillo, A. et al. Scavenger receptors mediate the role of SUMO and Ftz-f1 in Drosophila steroidogenesis. PLoS genetics 9, e1003473, doi: 10.1371/journal.pgen.1003473 (2013).
-
(2013)
PLoS Genetics
, vol.9
, pp. e1003473
-
-
Talamillo, A.1
-
50
-
-
46049099987
-
Smt3 is required for Drosophila melanogaster metamorphosis
-
Talamillo, A. et al. Smt3 is required for Drosophila melanogaster metamorphosis. Development 135, 1659-1668, doi: 10.1242/ dev.020685 (2008).
-
(2008)
Development
, vol.135
, pp. 1659-1668
-
-
Talamillo, A.1
-
51
-
-
84866790135
-
A diferential requirement for SUMOylation in proliferating and non-proliferating cells during Drosophila development
-
Kanakousaki, K. & Gibson, M. C. A diferential requirement for SUMOylation in proliferating and non-proliferating cells during Drosophila development. Development 139, 2751-2762, doi: 10.1242/dev.082974 (2012).
-
(2012)
Development
, vol.139
, pp. 2751-2762
-
-
Kanakousaki, K.1
Gibson, M.C.2
-
52
-
-
0036384285
-
Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1
-
Netzer, C., Bohlander, S. K., Rieger, L., Muller, S. & Kohlhase, J. Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1. Biochemical and biophysical research communications 296, 870-876 (2002).
-
(2002)
Biochemical and Biophysical Research Communications
, vol.296
, pp. 870-876
-
-
Netzer, C.1
Bohlander, S.K.2
Rieger, L.3
Muller, S.4
Kohlhase, J.5
-
53
-
-
84863507629
-
NEDD8 overexpression results in neddylation of ubiquitin substrates by the ubiquitin pathway
-
Hjerpe, R., Tomas, Y. & Kurz, T. NEDD8 overexpression results in neddylation of ubiquitin substrates by the ubiquitin pathway. Journal of molecular biology 421, 27-29, doi: 10.1016/j.jmb.2012.05.013 (2012).
-
(2012)
Journal of Molecular Biology
, vol.421
, pp. 27-29
-
-
Hjerpe, R.1
Tomas, Y.2
Kurz, T.3
-
54
-
-
3142519570
-
A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifer
-
Komatsu, M. et al. A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifer. EMBO J 23, 1977-1986, doi: 10.1038/ sj.emboj.7600205 (2004).
-
(2004)
EMBO J
, vol.23
, pp. 1977-1986
-
-
Komatsu, M.1
-
55
-
-
79953760562
-
Ubiquitin fold modifer 1 (UFM1) and its target UFBP1 protect pancreatic beta cells from ER stress-induced apoptosis
-
Lemaire, K. et al. Ubiquitin fold modifer 1 (UFM1) and its target UFBP1 protect pancreatic beta cells from ER stress-induced apoptosis. PloS one 6, e18517, doi: 10.1371/journal.pone.0018517 (2011).
-
(2011)
PloS One
, vol.6
, pp. e18517
-
-
Lemaire, K.1
-
56
-
-
84949294772
-
UFBP1, a Key Component of the Ufm1 Conjugation System, Is Essential for Ufmylation-Mediated Regulation of Erythroid Development
-
Cai, Y. et al. UFBP1, a Key Component of the Ufm1 Conjugation System, Is Essential for Ufmylation-Mediated Regulation of Erythroid Development. PLoS genetics 11, e1005643, doi: 10.1371/journal.pgen.1005643 (2015).
-
(2015)
PLoS Genetics
, vol.11
, pp. e1005643
-
-
Cai, Y.1
-
57
-
-
84865677098
-
A census of human soluble protein complexes
-
Havugimana, P. C. et al. A census of human soluble protein complexes. Cell 150, 1068-1081, doi: 10.1016/j.cell.2012.08.011 (2012).
-
(2012)
Cell
, vol.150
, pp. 1068-1081
-
-
Havugimana, P.C.1
-
58
-
-
84911474471
-
A proteome-scale map of the human interactome network
-
Rolland, T. et al. A proteome-scale map of the human interactome network. Cell 159, 1212-1226, doi: 10.1016/j.cell.2014.10.050 (2014).
-
(2014)
Cell
, vol.159
, pp. 1212-1226
-
-
Rolland, T.1
-
59
-
-
69849097500
-
PARP is activated at stalled forks to mediate Mre11-dependent replication restart and recombination
-
Bryant, H. E. et al. PARP is activated at stalled forks to mediate Mre11-dependent replication restart and recombination. EMBO J 28, 2601-2615, doi: 10.1038/emboj.2009.206 (2009).
-
(2009)
EMBO J
, vol.28
, pp. 2601-2615
-
-
Bryant, H.E.1
-
60
-
-
29244434544
-
MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks
-
Stucki, M. et al. MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks. Cell 123, 1213-1226, doi: 10.1016/j.cell.2005.09.038 (2005).
-
(2005)
Cell
, vol.123
, pp. 1213-1226
-
-
Stucki, M.1
-
61
-
-
84888617317
-
Control of nuclear activities by substrate-selective and protein-group SUMOylation
-
Jentsch, S. & Psakhye, I. Control of nuclear activities by substrate-selective and protein-group SUMOylation. Annu Rev Genet 47, 167-186, doi: 10.1146/annurev-genet-111212-133453 (2013).
-
(2013)
Annu Rev Genet
, vol.47
, pp. 167-186
-
-
Jentsch, S.1
Psakhye, I.2
-
62
-
-
84897472462
-
An ER complex of ODR-4 and ODR-8/Ufm1 specifc protease 2 promotes GPCR maturation by a Ufm1-independent mechanism
-
Chen, C., Itakura, E., Weber, K. P. , Hegde, R. S. & de Bono, M. An ER complex of ODR-4 and ODR-8/Ufm1 specifc protease 2 promotes GPCR maturation by a Ufm1-independent mechanism. PLoS genetics 10, e1004082, doi: 10.1371/journal.pgen.1004082 (2014).
-
(2014)
PLoS Genetics
, vol.10
, pp. e1004082
-
-
Chen, C.1
Itakura, E.2
Weber, K.P.3
Hegde, R.S.4
De Bono, M.5
-
63
-
-
84901804264
-
Human cytochrome b5 reductase: Structure, function, and potential applications
-
Elahian, F. , Sepehrizadeh, Z., Moghimi, B. & Mirzaei, S. A. Human cytochrome b5 reductase: structure, function, and potential applications. Crit Rev Biotechnol 34, 134-143, doi: 10.3109/07388551.2012.732031 (2014).
-
(2014)
Crit Rev Biotechnol
, vol.34
, pp. 134-143
-
-
Elahian, F.1
Sepehrizadeh, Z.2
Moghimi, B.3
Mirzaei, S.A.4
-
64
-
-
84968547784
-
The activity of the glucocorticoid receptor is regulated by SUMO conjugation to FKBP51
-
Antunica-Noguerol, M. et al. The activity of the glucocorticoid receptor is regulated by SUMO conjugation to FKBP51. Cell death and diferentiation 23, 1579-1591, doi: 10.1038/cdd.2016.44 (2016).
-
(2016)
Cell Death and Diferentiation
, vol.23
, pp. 1579-1591
-
-
Antunica-Noguerol, M.1
-
65
-
-
84949239276
-
SUMOylation of Syntaxin1A regulates presynaptic endocytosis
-
Craig, T. J., Anderson, D., Evans, A. J., Girach, F. & Henley, J. M. SUMOylation of Syntaxin1A regulates presynaptic endocytosis. Scientifc reports 5, 17669, doi: 10.1038/srep17669 (2015).
-
(2015)
Scientifc Reports
, vol.5
, pp. 17669
-
-
Craig, T.J.1
Anderson, D.2
Evans, A.J.3
Girach, F.4
Henley, J.M.5
-
66
-
-
84989905552
-
SUMOylated NKAP is essential for chromosome alignment by anchoring CENP-E to kinetochores
-
Li, T. et al. SUMOylated NKAP is essential for chromosome alignment by anchoring CENP-E to kinetochores. Nature communications 7, 12969, doi: 10.1038/ncomms12969 (2016).
-
(2016)
Nature Communications
, vol.7
, pp. 12969
-
-
Li, T.1
-
67
-
-
84957428444
-
SUMO modifcation of Akt regulates global SUMOylation and substrate SUMOylation specifcity through Akt phosphorylation of Ubc9 and SUMO1
-
Lin, C. H., Liu, S. Y. & Lee, E. H. SUMO modifcation of Akt regulates global SUMOylation and substrate SUMOylation specifcity through Akt phosphorylation of Ubc9 and SUMO1. Oncogene 35, 595-607, doi: 10.1038/onc.2015.115 (2016).
-
(2016)
Oncogene
, vol.35
, pp. 595-607
-
-
Lin, C.H.1
Liu, S.Y.2
Lee, E.H.3
-
68
-
-
84938375011
-
Identification and characterization of a novel ISG15-ubiquitin mixed chain and its role in regulating protein homeostasis
-
Fan, J. B. et al. Identification and characterization of a novel ISG15-ubiquitin mixed chain and its role in regulating protein homeostasis. Scientifc reports 5, 12704, doi: 10.1038/srep12704 (2015).
-
(2015)
Scientifc Reports
, vol.5
, pp. 12704
-
-
Fan, J.B.1
-
69
-
-
76649140147
-
ISG15 conjugation system targets the viral NS1 protein in infuenza A virus-infected cells
-
Zhao, C., Hsiang, T. Y. , Kuo, R. L. & Krug, R. M. ISG15 conjugation system targets the viral NS1 protein in infuenza A virus-infected cells. Proceedings of the National Academy of Sciences of the United States of America 107, 2253-2258, doi: 10.1073/pnas.0909144107 (2010).
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 2253-2258
-
-
Zhao, C.1
Hsiang, T.Y.2
Kuo, R.L.3
Krug, R.M.4
-
70
-
-
84904473529
-
Isg15 controls p53 stability and functions
-
Huang, Y. F., Wee, S., Gunaratne, J., Lane, D. P. & Bulavin, D. V. Isg15 controls p53 stability and functions. Cell Cycle 13, 2200-2210, doi: 10.4161/cc.29209 (2014).
-
(2014)
Cell Cycle
, vol.13
, pp. 2200-2210
-
-
Huang, Y.F.1
Wee, S.2
Gunaratne, J.3
Lane, D.P.4
Bulavin, D.V.5
-
71
-
-
80053903500
-
Elevated global SUMOylation in Ubc9 transgenic mice protects their brains against focal cerebral ischemic damage
-
Lee, Y. J. et al. Elevated global SUMOylation in Ubc9 transgenic mice protects their brains against focal cerebral ischemic damage. PloS one 6, e25852, doi: 10.1371/journal.pone.0025852 (2011).
-
(2011)
PloS One
, vol.6
, pp. e25852
-
-
Lee, Y.J.1
-
72
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modifed proteome
-
Kim, W. et al. Systematic and quantitative assessment of the ubiquitin-modifed proteome. Molecular cell 44, 325-340, doi: 10.1016/j. molcel.2011.08.025 (2011).
-
(2011)
Molecular Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
-
73
-
-
84925341263
-
Large-scale analysis of lysine SUMOylation by SUMO remnant immunoafnity profling
-
Lamoliatte, F. et al. Large-scale analysis of lysine SUMOylation by SUMO remnant immunoafnity profling. Nature communications 5, 5409, doi: 10.1038/ncomms6409 (2014).
-
(2014)
Nature Communications
, vol.5
, pp. 5409
-
-
Lamoliatte, F.1
-
74
-
-
79953187281
-
A novel proteomics approach to identify SUMOylated proteins and their modifcation sites in human cells
-
Galisson, F. et al. A novel proteomics approach to identify SUMOylated proteins and their modifcation sites in human cells. Molecular & cellular proteomics: MCP 10, M110 004796, doi: 10.1074/mcp.M110.004796 (2011).
-
(2011)
Molecular & Cellular Proteomics: MCP
, vol.10
-
-
Galisson, F.1
-
75
-
-
77955475112
-
Sumoylation modulates the activity of Spalt-like proteins during wing development in Drosophila
-
Sanchez, J. et al. Sumoylation modulates the activity of Spalt-like proteins during wing development in Drosophila. The Journal of biological chemistry 285, 25841-25849, doi: 10.1074/jbc.M110.124024 (2010).
-
(2010)
The Journal of Biological Chemistry
, vol.285
, pp. 25841-25849
-
-
Sanchez, J.1
-
76
-
-
0024362504
-
Expression vector system based on the chicken beta-actin promoter directs efcient production of interleukin-5
-
Miyazaki, J. et al. Expression vector system based on the chicken beta-actin promoter directs efcient production of interleukin-5. Gene 79, 269-277 (1989).
-
(1989)
Gene
, vol.79
, pp. 269-277
-
-
Miyazaki, J.1
-
77
-
-
27144511477
-
The role of the prothoracic gland in determining critical weight for metamorphosis in Drosophila melanogaster
-
Mirth, C., Truman, J. W. & Riddiford, L. M. The role of the prothoracic gland in determining critical weight for metamorphosis in Drosophila melanogaster. Current biology: CB 15, 1796-1807 (2005).
-
(2005)
Current Biology: CB
, vol.15
, pp. 1796-1807
-
-
Mirth, C.1
Truman, J.W.2
Riddiford, L.M.3
-
78
-
-
80052384081
-
GeLCMS for in-depth protein characterization and advanced analysis of proteomes
-
Lundby, A. & Olsen, J. V. GeLCMS for in-depth protein characterization and advanced analysis of proteomes. Methods Mol Biol 753, 143-155, doi: 10.1007/978-1-61779-148-2-10 (2011).
-
(2011)
Methods Mol Biol
, vol.753
, pp. 143-155
-
-
Lundby, A.1
Olsen, J.V.2
-
79
-
-
84861800006
-
Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer
-
Kelstrup, C. D., Young, C., Lavallee, R., Nielsen, M. L. & Olsen, J. V. Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer. Journal of proteome research 11, 3487-3497, doi: 10.1021/pr3000249 (2012).
-
(2012)
Journal of Proteome Research
, vol.11
, pp. 3487-3497
-
-
Kelstrup, C.D.1
Young, C.2
Lavallee, R.3
Nielsen, M.L.4
Olsen, J.V.5
-
80
-
-
84876581893
-
InnateDB: Systems biology of innate immunity and beyond-recent updates and continuing curation
-
Breuer, K. et al. InnateDB: systems biology of innate immunity and beyond-recent updates and continuing curation. Nucleic acids research 41, D1228-1233, doi: 10.1093/nar/gks1147 (2013).
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D1228-D1233
-
-
Breuer, K.1
-
81
-
-
79959923522
-
G:Profler-a web server for functional interpretation of gene lists (2011 update)
-
Reimand, J., Arak, T. & Vilo, J. g:Profler-a web server for functional interpretation of gene lists (2011 update). Nucleic acids research 39, W307-315, doi: 10.1093/nar/gkr378 (2011).
-
(2011)
Nucleic Acids Research
, vol.39
, pp. W307-W315
-
-
Reimand, J.1
Arak, T.2
Vilo, J.3
-
82
-
-
84902272773
-
EulerAPE: Drawing area-proportional 3-Venn diagrams using ellipses
-
Micallef, L. & Rodgers, P. eulerAPE: drawing area-proportional 3-Venn diagrams using ellipses. PloS one 9, e101717, doi: 10.1371/ journal.pone.0101717 (2014).
-
(2014)
PloS One
, vol.9
, pp. e101717
-
-
Micallef, L.1
Rodgers, P.2
-
83
-
-
84941051170
-
STRING v10: Protein-protein interaction networks, integrated over the tree of life
-
Szklarczyk, D. et al. STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic acids research 43, D447-452, doi: 10.1093/nar/gku1003 (2015).
-
(2015)
Nucleic Acids Research
, vol.43
, pp. D447-D452
-
-
Szklarczyk, D.1
-
84
-
-
2942552459
-
An automated method for fnding molecular complexes in large protein interaction networks
-
Bader, G. D. & Hogue, C. W. An automated method for fnding molecular complexes in large protein interaction networks. BMC Bioinformatics 4, 2 (2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
85
-
-
80655132169
-
ClusterMaker: A multi-algorithm clustering plugin for Cytoscape
-
Morris, J. H. et al. clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 12, 436, doi: 10.1186/1471-2105-12-436 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 436
-
-
Morris, J.H.1
-
87
-
-
68349125409
-
Enabled and Capping protein play important roles in shaping cell behavior during Drosophila oogenesis
-
Gates, J. et al. Enabled and Capping protein play important roles in shaping cell behavior during Drosophila oogenesis. Dev Biol 333, 90-107, doi: 10.1016/j.ydbio.2009.06.030 (2009).
-
(2009)
Dev Biol
, vol.333
, pp. 90-107
-
-
Gates, J.1
-
88
-
-
0036178103
-
Phosphorylation of eukaryotic translation initiation factor 4E is critical for growth
-
Lachance, P. E., Miron, M., Raught, B., Sonenberg, N. & Lasko, P. Phosphorylation of eukaryotic translation initiation factor 4E is critical for growth. Molecular and cellular biology 22, 1656-1663 (2002).
-
(2002)
Molecular and Cellular Biology
, vol.22
, pp. 1656-1663
-
-
Lachance, P.E.1
Miron, M.2
Raught, B.3
Sonenberg, N.4
Lasko, P.5
-
89
-
-
6344278675
-
Drosophila Ulp1 a nuclear pore-associated SUMO protease, prevents accumulation of cytoplasmic SUMO conjugates
-
Smith, M., Bhaskar, V. , Fernandez, J. & Courey, A. J. Drosophila Ulp1, a nuclear pore-associated SUMO protease, prevents accumulation of cytoplasmic SUMO conjugates. The Journal of biological chemistry 279, 43805-43814 (2004).
-
(2004)
The Journal of Biological Chemistry
, vol.279
, pp. 43805-43814
-
-
Smith, M.1
Bhaskar, V.2
Fernandez, J.3
Courey, A.J.4
|