메뉴 건너뛰기




Volumn 49, Issue 3, 2017, Pages 367-376

Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B; GLUTAMIC ACID; HISTONE H2AX; HISTONE H3; K RAS PROTEIN; LACTIC ACID; NERVE CELL ADHESION MOLECULE; CHROMATIN; GLUCOSE; HETEROCHROMATIN; HISTONE;

EID: 85009792040     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3753     Document Type: Article
Times cited : (341)

References (48)
  • 1
    • 78049398107 scopus 로고    scopus 로고
    • Distant metastasis occurs late during the genetic evolution of pancreatic cancer
    • Yachida, S. et al. Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature 467, 1114-1117 (2010).
    • (2010) Nature , vol.467 , pp. 1114-1117
    • Yachida, S.1
  • 2
    • 25144519682 scopus 로고    scopus 로고
    • Immortalizing the complexity of cancer metastasis: Genetic features of lethal metastatic pancreatic cancer obtained from rapid autopsy
    • Embuscado, E.E. et al. Immortalizing the complexity of cancer metastasis: genetic features of lethal metastatic pancreatic cancer obtained from rapid autopsy. Cancer Biol. Ther. 4, 548-554 (2005).
    • (2005) Cancer Biol. Ther. , vol.4 , pp. 548-554
    • Embuscado, E.E.1
  • 3
    • 62249176551 scopus 로고    scopus 로고
    • DPC4 gene status of the primary carcinoma correlates with patterns of failure in patients with pancreatic cancer
    • Iacobuzio-Donahue, C.A. et al. DPC4 gene status of the primary carcinoma correlates with patterns of failure in patients with pancreatic cancer. J. Clin. Oncol. 27, 1806-1813 (2009).
    • (2009) J. Clin. Oncol. , vol.27 , pp. 1806-1813
    • Iacobuzio-Donahue, C.A.1
  • 4
    • 84902147062 scopus 로고    scopus 로고
    • Projecting cancer incidence and deaths to 2030: The unexpected burden of thyroid, liver, and pancreas cancers in the United States
    • Rahib, L. et al. Projecting cancer incidence and deaths to 2030: the unexpected burden of thyroid, liver, and pancreas cancers in the United States. Cancer Res. 74, 2913-2921 (2014).
    • (2014) Cancer Res. , vol.74 , pp. 2913-2921
    • Rahib, L.1
  • 5
    • 59149083658 scopus 로고    scopus 로고
    • Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells
    • Wen, B., Wu, H., Shinkai, Y., Irizarry, R.A. & Feinberg, A.P. Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. Nat. Genet. 41, 246-250 (2009).
    • (2009) Nat. Genet. , vol.41 , pp. 246-250
    • Wen, B.1    Wu, H.2    Shinkai, Y.3    Irizarry, R.A.4    Feinberg, A.P.5
  • 6
    • 79960927422 scopus 로고    scopus 로고
    • Increased methylation variation in epigenetic domains across cancer types
    • Hansen, K.D. et al. Increased methylation variation in epigenetic domains across cancer types. Nat. Genet. 43, 768-775 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 768-775
    • Hansen, K.D.1
  • 7
    • 84906837231 scopus 로고    scopus 로고
    • Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors
    • Timp, W. et al. Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors. Genome Med. 6, 61 (2014).
    • (2014) Genome Med. , vol.6 , pp. 61
    • Timp, W.1
  • 8
    • 84961218734 scopus 로고    scopus 로고
    • Epigenetic modulators, modifiers and mediators in cancer aetiology and progression
    • Feinberg, A.P., Koldobskiy, M.A. & Göndör, A. Epigenetic modulators, modifiers and mediators in cancer aetiology and progression. Nat. Rev. Genet. 17, 284-299 (2016).
    • (2016) Nat. Rev. Genet. , vol.17 , pp. 284-299
    • Feinberg, A.P.1    Koldobskiy, M.A.2    Göndör, A.3
  • 9
    • 52149123619 scopus 로고    scopus 로고
    • Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
    • Jones, S. et al. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321, 1801-1806 (2008).
    • (2008) Science , vol.321 , pp. 1801-1806
    • Jones, S.1
  • 10
    • 78049380554 scopus 로고    scopus 로고
    • The patterns and dynamics of genomic instability in metastatic pancreatic cancer
    • Campbell, P.J. et al. The patterns and dynamics of genomic instability in metastatic pancreatic cancer. Nature 467, 1109-1113 (2010).
    • (2010) Nature , vol.467 , pp. 1109-1113
    • Campbell, P.J.1
  • 11
    • 85009726777 scopus 로고    scopus 로고
    • Limited heterogeneity of known driver gene mutations among the metastases of individual pancreatic cancer patients
    • Makohon-Moore, A.P. et al. Limited heterogeneity of known driver gene mutations among the metastases of individual pancreatic cancer patients. Nat. Genet. http://dx.doi.org/10.1038/ng.3764 (2017).
    • (2017) Nat. Genet.
    • Makohon-Moore, A.P.1
  • 12
    • 79961023271 scopus 로고    scopus 로고
    • Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition
    • McDonald, O.G., Wu, H., Timp, W., Doi, A. & Feinberg, A.P. Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition. Nat. Struct. Mol. Biol. 18, 867-874 (2011).
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 867-874
    • McDonald, O.G.1    Wu, H.2    Timp, W.3    Doi, A.4    Feinberg, A.P.5
  • 13
    • 0020055779 scopus 로고
    • Human pancreatic adenocarcinoma: In vitro and in vivo morphology of a new tumor line established from ascites
    • Chen, W.H. et al. Human pancreatic adenocarcinoma: in vitro and in vivo morphology of a new tumor line established from ascites. In Vitro 18, 24-34 (1982).
    • (1982) In Vitro , vol.18 , pp. 24-34
    • Chen, W.H.1
  • 14
    • 0020074424 scopus 로고
    • Antigens of human pancreatic adenocarcinoma cells defined by murine monoclonal antibodies
    • Metzgar, R.S. et al. Antigens of human pancreatic adenocarcinoma cells defined by murine monoclonal antibodies. Cancer Res. 42, 601-608 (1982).
    • (1982) Cancer Res. , vol.42 , pp. 601-608
    • Metzgar, R.S.1
  • 15
    • 0023003645 scopus 로고
    • Morphological, biological, biochemical, and karyotypic characteristics of human pancreatic ductal adenocarcinoma Capan-2 in tissue culture and the nude mouse
    • Kyriazis, A.A., Kyriazis, A.P., Sternberg, C.N., Sloane, N.H. & Loveless, J.D. Morphological, biological, biochemical, and karyotypic characteristics of human pancreatic ductal adenocarcinoma Capan-2 in tissue culture and the nude mouse. Cancer Res. 46, 5810-5815 (1986).
    • (1986) Cancer Res. , vol.46 , pp. 5810-5815
    • Kyriazis, A.A.1    Kyriazis, A.P.2    Sternberg, C.N.3    Sloane, N.H.4    Loveless, J.D.5
  • 16
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides, T. Chromatin modifications and their function. Cell 128, 693-705 (2007).
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 17
    • 0347955358 scopus 로고    scopus 로고
    • Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains
    • Rice, J.C. et al. Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains. Mol. Cell 12, 1591-1598 (2003).
    • (2003) Mol. Cell , vol.12 , pp. 1591-1598
    • Rice, J.C.1
  • 18
    • 0037183856 scopus 로고    scopus 로고
    • Establishment and maintenance of a heterochromatin domain
    • Hall, I.M. et al. Establishment and maintenance of a heterochromatin domain. Science 297, 2232-2237 (2002).
    • (2002) Science , vol.297 , pp. 2232-2237
    • Hall, I.M.1
  • 19
    • 84863386341 scopus 로고    scopus 로고
    • Origin of metastases: Subspecies of cancers generated by intrinsic karyotypic variations
    • Duesberg, P. et al. Origin of metastases: subspecies of cancers generated by intrinsic karyotypic variations. Cell Cycle 11, 1151-1166 (2012).
    • (2012) Cell Cycle , vol.11 , pp. 1151-1166
    • Duesberg, P.1
  • 20
    • 84865777819 scopus 로고    scopus 로고
    • ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Landt, S.G. et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 22, 1813-1831 (2012).
    • (2012) Genome Res. , vol.22 , pp. 1813-1831
    • Landt, S.G.1
  • 21
    • 84867785414 scopus 로고    scopus 로고
    • Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions
    • Wen, B. et al. Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions. BMC Genomics 13, 566 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 566
    • Wen, B.1
  • 22
    • 84856528270 scopus 로고    scopus 로고
    • Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
    • Hon, G.C. et al. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res. 22, 246-258 (2012).
    • (2012) Genome Res. , vol.22 , pp. 246-258
    • Hon, G.C.1
  • 23
    • 84896081834 scopus 로고    scopus 로고
    • Functional heterogeneity of genetically defined subclones in acute myeloid leukemia
    • Klco, J.M. et al. Functional heterogeneity of genetically defined subclones in acute myeloid leukemia. Cancer Cell 25, 379-392 (2014).
    • (2014) Cancer Cell , vol.25 , pp. 379-392
    • Klco, J.M.1
  • 24
    • 66249105703 scopus 로고    scopus 로고
    • ATP-citrate lyase links cellular metabolism to histone acetylation
    • Wellen, K.E. et al. ATP-citrate lyase links cellular metabolism to histone acetylation. Science 324, 1076-1080 (2009).
    • (2009) Science , vol.324 , pp. 1076-1080
    • Wellen, K.E.1
  • 25
    • 84905816638 scopus 로고    scopus 로고
    • Akt-dependent metabolic reprogramming regulates tumor cell histone acetylation
    • Lee, J.V. et al. Akt-dependent metabolic reprogramming regulates tumor cell histone acetylation. Cell Metab. 20, 306-319 (2014).
    • (2014) Cell Metab. , vol.20 , pp. 306-319
    • Lee, J.V.1
  • 26
    • 84948412126 scopus 로고    scopus 로고
    • Histone methylation dynamics and gene regulation occur through the sensing of one-carbon metabolism
    • Mentch, S.J. et al. Histone methylation dynamics and gene regulation occur through the sensing of one-carbon metabolism. Cell Metab. 22, 861-873 (2015).
    • (2015) Cell Metab. , vol.22 , pp. 861-873
    • Mentch, S.J.1
  • 27
    • 85013861713 scopus 로고    scopus 로고
    • The rate of glycolysis quantitatively mediates specific histone acetylation sites
    • Cluntun, A.A. et al. The rate of glycolysis quantitatively mediates specific histone acetylation sites. Cancer Metab. 3, 10 (2015).
    • (2015) Cancer Metab. , vol.3 , pp. 10
    • Cluntun, A.A.1
  • 28
    • 84875755814 scopus 로고    scopus 로고
    • Influence of metabolism on epigenetics and disease
    • Kaelin, W.G. Jr. & McKnight, S.L. Influence of metabolism on epigenetics and disease. Cell 153, 56-69 (2013).
    • (2013) Cell , vol.153 , pp. 56-69
    • Kaelin, W.G.1    McKnight, S.L.2
  • 29
    • 84925503908 scopus 로고    scopus 로고
    • Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells
    • Carey, B.W., Finley, L.W., Cross, J.R., Allis, C.D. & Thompson, C.B. Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells. Nature 518, 413-416 (2015).
    • (2015) Nature , vol.518 , pp. 413-416
    • Carey, B.W.1    Finley, L.W.2    Cross, J.R.3    Allis, C.D.4    Thompson, C.B.5
  • 30
    • 66249108601 scopus 로고    scopus 로고
    • Understanding the Warburg effect: The metabolic requirements of cell proliferation
    • Vander Heiden, M.G., Cantley, L.C. & Thompson, C.B. Understanding the Warburg effect: the metabolic requirements of cell proliferation. Science 324, 1029-1033 (2009).
    • (2009) Science , vol.324 , pp. 1029-1033
    • Vander Heiden, M.G.1    Cantley, L.C.2    Thompson, C.B.3
  • 31
    • 84959451365 scopus 로고    scopus 로고
    • The Warburg effect: How does it benefit cancer cells?
    • Liberti, M.V. & Locasale, J.W. The Warburg effect: how does it benefit cancer cells? Trends Biochem. Sci. 41, 211-218 (2016).
    • (2016) Trends Biochem. Sci. , vol.41 , pp. 211-218
    • Liberti, M.V.1    Locasale, J.W.2
  • 32
    • 84906791699 scopus 로고    scopus 로고
    • Lysine acetylation activates 6-phosphogluconate dehydrogenase to promote tumor growth
    • Shan, C. et al. Lysine acetylation activates 6-phosphogluconate dehydrogenase to promote tumor growth. Mol. Cell 55, 552-565 (2014).
    • (2014) Mol. Cell , vol.55 , pp. 552-565
    • Shan, C.1
  • 33
    • 0040647927 scopus 로고
    • 6-Aminonicotinamide-a potent nicotinamide antagonist
    • Johnson, W.J. & McColl, J.D. 6-Aminonicotinamide-a potent nicotinamide antagonist. Science 122, 834 (1955).
    • (1955) Science , vol.122 , pp. 834
    • Johnson, W.J.1    McColl, J.D.2
  • 34
    • 0000281046 scopus 로고
    • Inhibition of NADP dependent oxidoreductases by the 6-aminonicotinamide analogue of NADP
    • Köhler, E., Barrach, H. & Neubert, D. Inhibition of NADP dependent oxidoreductases by the 6-aminonicotinamide analogue of NADP. FEBS Lett. 6, 225-228 (1970).
    • (1970) FEBS Lett. , vol.6 , pp. 225-228
    • Köhler, E.1    Barrach, H.2    Neubert, D.3
  • 35
    • 84878990582 scopus 로고    scopus 로고
    • Control of alveolar differentiation by the lineage transcription factors GATA6 and HOPX inhibits lung adenocarcinoma metastasis
    • Cheung, W.K. et al. Control of alveolar differentiation by the lineage transcription factors GATA6 and HOPX inhibits lung adenocarcinoma metastasis. Cancer Cell 23, 725-738 (2013).
    • (2013) Cancer Cell , vol.23 , pp. 725-738
    • Cheung, W.K.1
  • 36
    • 81855194258 scopus 로고    scopus 로고
    • C-Met is a marker of pancreatic cancer stem cells and therapeutic target
    • Li, C. et al. c-Met is a marker of pancreatic cancer stem cells and therapeutic target. Gastroenterology 141, 2218-2227.e5 (2011).
    • (2011) Gastroenterology , vol.141 , pp. 2218e5-2227e5
    • Li, C.1
  • 37
    • 78650012935 scopus 로고    scopus 로고
    • Invasive three-dimensional organotypic neoplasia from multiple normal human epithelia
    • Ridky, T.W., Chow, J.M., Wong, D.J. & Khavari, P.A. Invasive three-dimensional organotypic neoplasia from multiple normal human epithelia. Nat. Med. 16, 1450-1455 (2010).
    • (2010) Nat. Med. , vol.16 , pp. 1450-1455
    • Ridky, T.W.1    Chow, J.M.2    Wong, D.J.3    Khavari, P.A.4
  • 38
    • 0037449752 scopus 로고    scopus 로고
    • Epidermal growth factor receptor mediates increased cell proliferation, migration, and aggregation in esophageal keratinocytes in vitro and in vivo
    • Andl, C.D. et al. Epidermal growth factor receptor mediates increased cell proliferation, migration, and aggregation in esophageal keratinocytes in vitro and in vivo. J. Biol. Chem. 278, 1824-1830 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 1824-1830
    • Andl, C.D.1
  • 39
    • 84894264194 scopus 로고    scopus 로고
    • Development and quantitative evaluation of a high-resolution metabolomics technology
    • Liu, X., Ser, Z. & Locasale, J.W. Development and quantitative evaluation of a high-resolution metabolomics technology. Anal. Chem. 86, 2175-2184 (2014).
    • (2014) Anal. Chem. , vol.86 , pp. 2175-2184
    • Liu, X.1    Ser, Z.2    Locasale, J.W.3
  • 40
    • 84866853818 scopus 로고    scopus 로고
    • BSmooth: From whole genome bisulfite sequencing reads to differentially methylated regions
    • Hansen, K.D., Langmead, B. & Irizarry, R.A. BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions. Genome Biol. 13, R83 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R83
    • Hansen, K.D.1    Langmead, B.2    Irizarry, R.A.3
  • 41
    • 84864134986 scopus 로고    scopus 로고
    • OSA: A fast and accurate alignment tool for RNA-Seq
    • Hu, J., Ge, H., Newman, M. & Liu, K. OSA: a fast and accurate alignment tool for RNA-Seq. Bioinformatics 28, 1933-1934 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1933-1934
    • Hu, J.1    Ge, H.2    Newman, M.3    Liu, K.4
  • 42
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 43
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 44
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 45
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol. , vol.9 , pp. R137
    • Zhang, Y.1
  • 46
    • 79952598545 scopus 로고    scopus 로고
    • Identifying dispersed epigenomic domains from ChIP-Seq data
    • Song, Q. & Smith, A.D. Identifying dispersed epigenomic domains from ChIP-Seq data. Bioinformatics 27, 870-871 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 870-871
    • Song, Q.1    Smith, A.D.2
  • 47
    • 77953809032 scopus 로고    scopus 로고
    • Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
    • Hawkins, R.D. et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell 6, 479-491 (2010).
    • (2010) Cell Stem Cell , vol.6 , pp. 479-491
    • Hawkins, R.D.1
  • 48
    • 84863709495 scopus 로고    scopus 로고
    • Exploring massive, genome scale datasets with the GenometriCorr package
    • Favorov, A. et al. Exploring massive, genome scale datasets with the GenometriCorr package. PLoS Comput. Biol. 8, e1002529 (2012).
    • (2012) PLoS Comput. Biol. , vol.8 , pp. e1002529
    • Favorov, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.