-
1
-
-
77955443472
-
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
-
Au, K. F. et al. (2010) Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res., 38, 4570-4578.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4570-4578
-
-
Au, K.F.1
-
2
-
-
0035165586
-
SpliceDB: database of canonical and non-canonical mammalian splice sites
-
Burset, M. et al. (2001) SpliceDB: database of canonical and non-canonical mammalian splice sites. Nucleic Acids Res., 29, 255-259.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 255-259
-
-
Burset, M.1
-
3
-
-
84859373452
-
RNASEQR-a streamlined and accurate RNA-seq sequence analysis program
-
Chen, L. Y. et al. (2012) RNASEQR-a streamlined and accurate RNA-seq sequence analysis program. Nucleic Acids Res, 40, e42.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Chen, L.Y.1
-
4
-
-
77949513645
-
SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
-
Falgueras, J. et al. (2010) SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read. BMC Bioinformatics, 11, 38.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 38
-
-
Falgueras, J.1
-
5
-
-
80052745094
-
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
-
Grant, G. R. et al. (2011) Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinformatics, 27, 2518-2528.
-
(2011)
Bioinformatics
, vol.27
, pp. 2518-2528
-
-
Grant, G.R.1
-
6
-
-
83755164978
-
SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-Seq data
-
Huang, S. et al. (2011) SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-Seq data. Front. Genet., 2, 46.
-
(2011)
Front. Genet.
, vol.2
, pp. 46
-
-
Huang, S.1
-
7
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent, W. J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
8
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
-
9
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni, J. C. et al. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res., 18, 1509-1517.
-
(2008)
Genome Res
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
-
10
-
-
80052960863
-
Next-generation transcriptome assembly
-
Martin, J. A. and Wang, Z. (2011) Next-generation transcriptome assembly. Nat. Rev. Genet., 12, 671-682.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 671-682
-
-
Martin, J.A.1
Wang, Z.2
-
11
-
-
78751570979
-
RNA sequencing: advances, challenges and opportunities
-
Ozsolak, F. and Milos, P. M. (2011) RNA sequencing: advances, challenges and opportunities. Nat. Rev. Genet., 12, 87-98.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
12
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell, C. et al. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
-
13
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang, E. T. et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
-
14
-
-
78649345104
-
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery
-
Wang, K. et al. (2010) MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res., 38, e178.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, K.1
-
15
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang, Z. et al. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 10, 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
-
16
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
Wu, T. D. and Nacu, S. (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
|