-
1
-
-
85013153670
-
-
The End TB Strategy. Available at: (accessed 3 January ).
-
[1] World Health Organization. The End TB Strategy. Available at: http://who.int/tb/post2015_TBstrategy.pdf?ua=1 (accessed 3 January 2015).
-
(2015)
-
-
-
2
-
-
84865231395
-
Transforming clinical microbiology with bacterial genome sequencing
-
[2] Didelot, X., Bowden, R., Wilson, D.J., Peto, T.E.A., Crook, D.W., Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet 13 (2012), 601–612.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 601-612
-
-
Didelot, X.1
Bowden, R.2
Wilson, D.J.3
Peto, T.E.A.4
Crook, D.W.5
-
3
-
-
84958068536
-
Real-time, portable genome sequencing for Ebola surveillance
-
[3] Quick, J., Loman, N.J., Duraffour, S., Simpson, J.T., Severi, E., Cowley, L., et al. Real-time, portable genome sequencing for Ebola surveillance. Nature 530 (2016), 228–232.
-
(2016)
Nature
, vol.530
, pp. 228-232
-
-
Quick, J.1
Loman, N.J.2
Duraffour, S.3
Simpson, J.T.4
Severi, E.5
Cowley, L.6
-
4
-
-
84942192606
-
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
-
[4] Walker, T.M., Kohl, T.A., Omar, S.V., Hedge, J., Del Ojo Elias, C., Bradley, P., et al. Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study. Lancet Infect Dis 15 (2015), 1193–1202.
-
(2015)
Lancet Infect Dis
, vol.15
, pp. 1193-1202
-
-
Walker, T.M.1
Kohl, T.A.2
Omar, S.V.3
Hedge, J.4
Del Ojo Elias, C.5
Bradley, P.6
-
5
-
-
79960927278
-
Comparison of Xpert MTB/RIF with other nucleic acid technologies for diagnosing pulmonary tuberculosis in a high HIV prevalence setting: a prospective study
-
[5] Scott, L.E., McCarthy, K., Gous, N., Nduna, M., Van Rie, A., Sanne, I., et al. Comparison of Xpert MTB/RIF with other nucleic acid technologies for diagnosing pulmonary tuberculosis in a high HIV prevalence setting: a prospective study. PLoS Med, 8, 2011, e1001061.
-
(2011)
PLoS Med
, vol.8
, pp. e1001061
-
-
Scott, L.E.1
McCarthy, K.2
Gous, N.3
Nduna, M.4
Van Rie, A.5
Sanne, I.6
-
6
-
-
71549144519
-
Global Tuberculosis Report
-
20th ed. Available at: (accessed 3 July 2016)
-
[6] World Health Organization, Global Tuberculosis Report., 20th ed., 2015 Available at: http://apps.who.int/iris/bitstream/10665/191102/1/9789241565059_eng.pdf?ua=1 (accessed 3 July 2016).
-
(2015)
-
-
World Health Organization1
-
7
-
-
0004321387
-
An Expanded DOTS Framework for Effective Tuberculosis Control
-
WHO Geneva
-
[7] World Health Organization, An Expanded DOTS Framework for Effective Tuberculosis Control. 2002, WHO, Geneva.
-
(2002)
-
-
World Health Organization1
-
8
-
-
84989256664
-
Tuberculosis
-
London Available at: (accessed 3 July 2016)
-
[8] National Institute for Clinical Excellence, Tuberculosis. London, 2016, 1–178 Available at: https://www.nice.org.uk/guidance/ng33/ (accessed 3 July 2016).
-
(2016)
, pp. 1-178
-
-
National Institute for Clinical Excellence1
-
9
-
-
84872187252
-
Recommendations for Investigating Contacts of Persons with Infectious Tuberculosis in Low- and Middle-Income Countries
-
World Health Organization France Available at: (accessed 3 July 2016)
-
[9] Hopewell, P.C., Fair, E., Miller, C., Recommendations for Investigating Contacts of Persons with Infectious Tuberculosis in Low- and Middle-Income Countries. 2012, World Health Organization, France Available at: http://apps.who.int/iris/bitstream/10665/77741/1/9789241504492_eng.pdf (accessed 3 July 2016).
-
(2012)
-
-
Hopewell, P.C.1
Fair, E.2
Miller, C.3
-
10
-
-
84920529998
-
Diversity and evolution of Mycobacterium tuberculosis: moving to whole-genome-based approaches
-
[10] Niemann, S., Supply, P., Diversity and evolution of Mycobacterium tuberculosis: moving to whole-genome-based approaches. Cold Spring Harbor Persp Med 4 (2014), a021188–8.
-
(2014)
Cold Spring Harbor Persp Med
, vol.4
, pp. a021188-8
-
-
Niemann, S.1
Supply, P.2
-
11
-
-
84874469388
-
Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study
-
[11] Roetzer, A., Diel, R., Kohl, T.A., Rückert, C., Nübel, U., Blom, J., et al. Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study. PLoS Med, 10, 2013, e1001387.
-
(2013)
PLoS Med
, vol.10
, pp. e1001387
-
-
Roetzer, A.1
Diel, R.2
Kohl, T.A.3
Rückert, C.4
Nübel, U.5
Blom, J.6
-
12
-
-
84897966231
-
Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007–12, with whole pathogen genome sequences: an observational study
-
[12] Walker, T.M., Lalor, M.K., Broda, A., Saldana Ortega, L., Morgan, M., Parker, L., et al. Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007–12, with whole pathogen genome sequences: an observational study. Lancet Resp Med 2 (2014), 285–292.
-
(2014)
Lancet Resp Med
, vol.2
, pp. 285-292
-
-
Walker, T.M.1
Lalor, M.K.2
Broda, A.3
Saldana Ortega, L.4
Morgan, M.5
Parker, L.6
-
13
-
-
85006256421
-
Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area
-
[13] Guerra-Assunção, J.A., Crampin, A.C., Houben, R., Mzembe, T., Mallard, K., Coll, F., et al. Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. eLife Sci, 4, 2015, e05166.
-
(2015)
eLife Sci
, vol.4
, pp. e05166
-
-
Guerra-Assunção, J.A.1
Crampin, A.C.2
Houben, R.3
Mzembe, T.4
Mallard, K.5
Coll, F.6
-
14
-
-
84893048186
-
Controversies in preventive therapy for children contacts of multidrug-resistant tuberculosis
-
[14] Chiappini, E., Sollai, S., Bonsignori, F., Galli, L., de Martino, M., Controversies in preventive therapy for children contacts of multidrug-resistant tuberculosis. J Chemother 26 (2014), 1–12.
-
(2014)
J Chemother
, vol.26
, pp. 1-12
-
-
Chiappini, E.1
Sollai, S.2
Bonsignori, F.3
Galli, L.4
de Martino, M.5
-
15
-
-
84952979528
-
Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
-
[15] Pankhurst, L.J., Del Ojo Elias, C., Votintseva, A.A., Walker, T.M., Cole, K., Davies, J., et al. Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study. Lancet Resp Med 4 (2016), 49–58.
-
(2016)
Lancet Resp Med
, vol.4
, pp. 49-58
-
-
Pankhurst, L.J.1
Del Ojo Elias, C.2
Votintseva, A.A.3
Walker, T.M.4
Cole, K.5
Davies, J.6
-
16
-
-
84872513471
-
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
-
[16] Walker, T.M., Ip, C.L., Harrell, R.H., Evans, J.T., Kapatai, G., Dedicoat, M.J., et al. Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study. Lancet Infect Dis 13 (2013), 137–146.
-
(2013)
Lancet Infect Dis
, vol.13
, pp. 137-146
-
-
Walker, T.M.1
Ip, C.L.2
Harrell, R.H.3
Evans, J.T.4
Kapatai, G.5
Dedicoat, M.J.6
-
17
-
-
84874261750
-
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
-
1–12
-
[17] Bryant, J.M., Schurch, A.C., van Deutekom, H., Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data. BMC Infect Dis, 13, 2013, 110 1–12.
-
(2013)
BMC Infect Dis
, vol.13
, pp. 110
-
-
Bryant, J.M.1
Schurch, A.C.2
van Deutekom, H.3
-
18
-
-
84927750140
-
Recurrence due to relapse or reinfection with Mycobacterium tuberculosis: a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up
-
[18] Guerra-Assunção, J.A., Houben, R.M.G.J., Crampin, A.C., Mzembe, T., Mallard, K., Coll, F., et al. Recurrence due to relapse or reinfection with Mycobacterium tuberculosis: a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up. J Infect Dis 211:7 (2015), 1154–1163.
-
(2015)
J Infect Dis
, vol.211
, Issue.7
, pp. 1154-1163
-
-
Guerra-Assunção, J.A.1
Houben, R.M.G.J.2
Crampin, A.C.3
Mzembe, T.4
Mallard, K.5
Coll, F.6
-
19
-
-
84874625116
-
Use of whole genome sequencing to determine the microevolution of Mycobacterium tuberculosis during an outbreak
-
[19] Kato-Maeda, M., Ho, C., Passarelli, B., Banaei, N., Grinsdale, J., Flores, L., et al. Use of whole genome sequencing to determine the microevolution of Mycobacterium tuberculosis during an outbreak. PLoS One, 8, 2013, e58235.
-
(2013)
PLoS One
, vol.8
, pp. e58235
-
-
Kato-Maeda, M.1
Ho, C.2
Passarelli, B.3
Banaei, N.4
Grinsdale, J.5
Flores, L.6
-
20
-
-
84926648740
-
Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing
-
[20] Stucki, D., Ballif, M., Bodmer, T., Coscolla, M., Maurer, A.-M., Droz, S., et al. Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing. J Infect Dis 211:8 (2015), 1306–1316.
-
(2015)
J Infect Dis
, vol.211
, Issue.8
, pp. 1306-1316
-
-
Stucki, D.1
Ballif, M.2
Bodmer, T.3
Coscolla, M.4
Maurer, A.-M.5
Droz, S.6
-
21
-
-
84903792383
-
Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach
-
[21] Kohl, T.A., Diel, R., Harmsen, D., Rothgänger, J., Walter, K.M., Merker, M., et al. Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach. J Clin Microbiol 52:7 (2014), 2479–2486.
-
(2014)
J Clin Microbiol
, vol.52
, Issue.7
, pp. 2479-2486
-
-
Kohl, T.A.1
Diel, R.2
Harmsen, D.3
Rothgänger, J.4
Walter, K.M.5
Merker, M.6
-
22
-
-
84952831709
-
Pathogen Genomics Into Practice PHG Foundation
-
Cambridge.
-
[22] Luheshi L, Raza S, Moorthie S, Hall A, Blackburn L, Rands C, et al. Pathogen Genomics Into Practice PHG Foundation (2015). Cambridge.
-
(2015)
-
-
Luheshi, L.1
Raza, S.2
Moorthie, S.3
Hall, A.4
Blackburn, L.5
Rands, C.6
-
23
-
-
84965189781
-
Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient
-
[23] Eldholm, V., Norheim, G., Lippe von der, B., Kinander, W., Dahle, U.R., Caugant, D.A., et al. Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient. Genome Biol, 15, 2014, 490.
-
(2014)
Genome Biol
, vol.15
, pp. 490
-
-
Eldholm, V.1
Norheim, G.2
Lippe von der, B.3
Kinander, W.4
Dahle, U.R.5
Caugant, D.A.6
-
24
-
-
84949194114
-
Within patient microevolution of Mycobacterium tuberculosis correlates with heterogeneous responses to treatment
-
[24] Liu, Q., Via, L.E., Luo, T., Liang, L., Liu, X., Wu, S., et al. Within patient microevolution of Mycobacterium tuberculosis correlates with heterogeneous responses to treatment. Sci Rep, 5, 2015, 17507.
-
(2015)
Sci Rep
, vol.5
, pp. 17507
-
-
Liu, Q.1
Via, L.E.2
Luo, T.3
Liang, L.4
Liu, X.5
Wu, S.6
-
25
-
-
84879682699
-
Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
-
[25] Ford, C.B., Shah, R.R., Maeda, M.K., Gagneux, S., Murray, M.B., Cohen, T., et al. Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis. Nat Genet 45:7 (2013), 784–790.
-
(2013)
Nat Genet
, vol.45
, Issue.7
, pp. 784-790
-
-
Ford, C.B.1
Shah, R.R.2
Maeda, M.K.3
Gagneux, S.4
Murray, M.B.5
Cohen, T.6
-
26
-
-
84895895475
-
Evolution and transmission of drug-resistant tuberculosis in a Russian population
-
[26] Casali, N., Nikolayevskyy, V., Balabanova, Y., Harris, S.R., Ignatyeva, O., Kontsevaya, I., et al. Evolution and transmission of drug-resistant tuberculosis in a Russian population. Nat Genet 46 (2014), 279–286.
-
(2014)
Nat Genet
, vol.46
, pp. 279-286
-
-
Casali, N.1
Nikolayevskyy, V.2
Balabanova, Y.3
Harris, S.R.4
Ignatyeva, O.5
Kontsevaya, I.6
-
27
-
-
84928483773
-
Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage
-
[27] Merker, M., Blin, C., Mona, S., Duforet-Frebourg, N., Lecher, S., Willery, E., et al. Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. Nat Genet 47 (2015), 242–249.
-
(2015)
Nat Genet
, vol.47
, pp. 242-249
-
-
Merker, M.1
Blin, C.2
Mona, S.3
Duforet-Frebourg, N.4
Lecher, S.5
Willery, E.6
-
28
-
-
78649321465
-
The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa
-
[28] Ioerger, T.R., Feng, Y., Chen, X., Dobos, K.M., Victor, T.C., Streicher, E.M., et al. The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa. BMC Genomics, 11, 2010, 670.
-
(2010)
BMC Genomics
, vol.11
, pp. 670
-
-
Ioerger, T.R.1
Feng, Y.2
Chen, X.3
Dobos, K.M.4
Victor, T.C.5
Streicher, E.M.6
-
29
-
-
84943151497
-
Evolution of extensively drug-resistant tuberculosis over four decades: whole genome sequencing and dating analysis of Mycobacterium tuberculosis isolates from KwaZulu-Natal
-
[29] Cohen, K.A., Abeel, T., Manson McGuire, A., Desjardins, C.A., Munsamy, V., Shea, T.P., et al. Evolution of extensively drug-resistant tuberculosis over four decades: whole genome sequencing and dating analysis of Mycobacterium tuberculosis isolates from KwaZulu-Natal. PLoS Med 12 (2015), e1001880–22.
-
(2015)
PLoS Med
, vol.12
, pp. e1001880-22
-
-
Cohen, K.A.1
Abeel, T.2
Manson McGuire, A.3
Desjardins, C.A.4
Munsamy, V.5
Shea, T.P.6
-
30
-
-
84892472865
-
Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis
-
[30] McGrath, M., Gey van Pittius, N.C., van Helden, P.D., Warren, R.M., Warner, D.F., Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis. J Antimicrob Chemother 69 (2014), 292–302.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 292-302
-
-
McGrath, M.1
Gey van Pittius, N.C.2
van Helden, P.D.3
Warren, R.M.4
Warner, D.F.5
-
31
-
-
84861474432
-
Modeling the dynamic relationship between HIV and the risk of drug-resistant tuberculosis
-
[31] Sergeev, R., Colijn, C., Murray, M., Cohen, T., Modeling the dynamic relationship between HIV and the risk of drug-resistant tuberculosis. Science Translational Medicine, 4, 2012, 135ra67.
-
(2012)
Science Translational Medicine
, vol.4
, pp. 135ra67
-
-
Sergeev, R.1
Colijn, C.2
Murray, M.3
Cohen, T.4
-
32
-
-
42449126680
-
Spread of a low-fitness drug-resistant Mycobacterium tuberculosis strain in a setting of high human immunodeficiency virus prevalence
-
[32] Strauss, O.J., Warren, R.M., Jordaan, A., Streicher, E.M., Hanekom, M., Falmer, A.A., et al. Spread of a low-fitness drug-resistant Mycobacterium tuberculosis strain in a setting of high human immunodeficiency virus prevalence. J Clin Microbiol 46 (2008), 1514–1516.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 1514-1516
-
-
Strauss, O.J.1
Warren, R.M.2
Jordaan, A.3
Streicher, E.M.4
Hanekom, M.5
Falmer, A.A.6
-
33
-
-
84983087044
-
Impact of HIV co-infection on the evolution and transmission of multidrug- resistant tuberculosis
-
pii: e16644
-
[33] Eldholm, V., Rieux, A., Monteserin, J., Montana Lopez, J., Palmero, D., Lopez, B., et al. Impact of HIV co-infection on the evolution and transmission of multidrug- resistant tuberculosis. ELife, 5, 2016: Aug 9 pii: e16644.
-
(2016)
ELife
, vol.5
-
-
Eldholm, V.1
Rieux, A.2
Monteserin, J.3
Montana Lopez, J.4
Palmero, D.5
Lopez, B.6
-
34
-
-
84884777242
-
Multidrug-resistant tuberculosis in panama is driven by clonal expansion of a multidrug-resistant Mycobacterium tuberculosis strain related to the KZN extensively drug-resistant M. tuberculosis strain from South Africa
-
[34] Lanzas, F., Karakousis, P.C., Sacchettini, J.C., Ioerger, T.R., Multidrug-resistant tuberculosis in panama is driven by clonal expansion of a multidrug-resistant Mycobacterium tuberculosis strain related to the KZN extensively drug-resistant M. tuberculosis strain from South Africa. J Clin Microbiol 51 (2013), 3277–3285.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 3277-3285
-
-
Lanzas, F.1
Karakousis, P.C.2
Sacchettini, J.C.3
Ioerger, T.R.4
-
35
-
-
85013149852
-
-
Automated real-time nucleic acid amplification technology for rapid and simultaneous detection of tuberculosis and rifampicin resistance: Xpert MTB/RIF System. Geneva: World Health Organization; :1–36.
-
[35] World Health Organization. Automated real-time nucleic acid amplification technology for rapid and simultaneous detection of tuberculosis and rifampicin resistance: Xpert MTB/RIF System. Geneva: World Health Organization; 2011:1–36.
-
(2011)
-
-
-
36
-
-
85013183502
-
-
more effective TB diagnosis. OxAcUk. Available at: (accessed 3 July ).
-
[36] Global team aim faster, more effective TB diagnosis. OxAcUk. Available at: http://www.ox.ac.uk/news/2016-03-24-global-team-aim-faster-more-effective-tb-diagnosis (accessed 3 July 2016).
-
(2016)
-
-
-
37
-
-
84908425946
-
Mycobacterium tuberculosis pyrazinamide resistance determinants: a multicenter study
-
Oct 21
-
[37] Miotto, P., Cabibbe, A.M., Feuerriegel, S., Casali, N., Drobniewski, F., Rodionova, Y., et al. Mycobacterium tuberculosis pyrazinamide resistance determinants: a multicenter study. Mbio 5:5 (2014 Oct 21), e01819–14.
-
(2014)
Mbio
, vol.5
, Issue.5
, pp. e01819-14
-
-
Miotto, P.1
Cabibbe, A.M.2
Feuerriegel, S.3
Casali, N.4
Drobniewski, F.5
Rodionova, Y.6
-
38
-
-
84988841320
-
The shorter MDR-TB regimen
-
Available at: (accessed 3 July 2016)
-
[38] World Health Organization, World, The shorter MDR-TB regimen. 2016, 1–2 Available at: http://www.who.int/tb/Short_MDR_regimen_factsheet.pdf (accessed 3 July 2016).
-
(2016)
, pp. 1-2
-
-
World Health Organization, World,1
-
39
-
-
84901686255
-
Profiling of rpoB Mutations and MICs for Rifampin and Rifabutin in Mycobacterium tuberculosis
-
[39] Jamieson, F.B., Guthrie, J.L., Neemuchwala, A., Lastovetska, O., Melano, R.G., Mehaffy, C., Profiling of rpoB Mutations and MICs for Rifampin and Rifabutin in Mycobacterium tuberculosis. J Clin Microbiol 52:6 (2014), 2157–2162.
-
(2014)
J Clin Microbiol
, vol.52
, Issue.6
, pp. 2157-2162
-
-
Jamieson, F.B.1
Guthrie, J.L.2
Neemuchwala, A.3
Lastovetska, O.4
Melano, R.G.5
Mehaffy, C.6
-
40
-
-
84981186588
-
Genetic determinants of drug resistance in Mycobacterium tuberculosis and their diagnostic value
-
[40] Farhat, M.R., Sultana, R., Iartchouk, O., Bozeman, S., Galagan, J., Sisk, P., et al. Genetic determinants of drug resistance in Mycobacterium tuberculosis and their diagnostic value. Am J Resp Crit Care Med 194:5 (2016), 621–630.
-
(2016)
Am J Resp Crit Care Med
, vol.194
, Issue.5
, pp. 621-630
-
-
Farhat, M.R.1
Sultana, R.2
Iartchouk, O.3
Bozeman, S.4
Galagan, J.5
Sisk, P.6
-
41
-
-
85019567721
-
Identifying lineage effects when controlling for population structure improves power in bacterial association studies
-
[41] Earle, S.G., Wu, C.-H., Charlesworth, J., Stoesser, N., Gordon, N.C., Walker, T.M., et al. Identifying lineage effects when controlling for population structure improves power in bacterial association studies. Nature Microbiol, 1, 2016, 16041.
-
(2016)
Nature Microbiol
, vol.1
, pp. 16041
-
-
Earle, S.G.1
Wu, C.-H.2
Charlesworth, J.3
Stoesser, N.4
Gordon, N.C.5
Walker, T.M.6
-
42
-
-
84898658016
-
Moxifloxacin retains antimycobacterial activity in the presence of gyrA mutations
-
[42] McGrath, M., Gey van Pittius, N.C., Sirgel, F.A., Van Helden, P.D., Warren, R.M., Moxifloxacin retains antimycobacterial activity in the presence of gyrA mutations. Antimicrob Agents Chemother 58 (2014), 2912–2915.
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 2912-2915
-
-
McGrath, M.1
Gey van Pittius, N.C.2
Sirgel, F.A.3
Van Helden, P.D.4
Warren, R.M.5
-
43
-
-
84892459023
-
Systematic review of allelic exchange experiments aimed at identifying mutations that confer drug resistance in Mycobacterium tuberculosis
-
[43] Nebenzahl-Guimaraes, H., Jacobson, K.R., Farhat, M.R., Murray, M.B., Systematic review of allelic exchange experiments aimed at identifying mutations that confer drug resistance in Mycobacterium tuberculosis. J Antimicrob Chemother 69 (2014), 331–342.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 331-342
-
-
Nebenzahl-Guimaraes, H.1
Jacobson, K.R.2
Farhat, M.R.3
Murray, M.B.4
-
44
-
-
84951962885
-
Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a TBNET/RESIST-TB consensus statement
-
[44] Dominguez, J., Boettger, E.C., Cirillo, D., Cobelens, F., Eisenach, K.D., Gagneux, S., et al. Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a TBNET/RESIST-TB consensus statement. Int J Tuberc Lung Dis 20 (2016), 24–42.
-
(2016)
Int J Tuberc Lung Dis
, vol.20
, pp. 24-42
-
-
Dominguez, J.1
Boettger, E.C.2
Cirillo, D.3
Cobelens, F.4
Eisenach, K.D.5
Gagneux, S.6
-
45
-
-
84880322995
-
Epidemiology of isoniazid resistance mutations and their effect on tuberculosis treatment outcomes
-
[45] Huyen, M.N.T., Cobelens, F.G.J., Buu, T.N., Lan, N.T.N., Dung, N.H., Kremer, K., et al. Epidemiology of isoniazid resistance mutations and their effect on tuberculosis treatment outcomes. Antimicrob Agents Chemother 57:8 (2013), 3620–3627.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, Issue.8
, pp. 3620-3627
-
-
Huyen, M.N.T.1
Cobelens, F.G.J.2
Buu, T.N.3
Lan, N.T.N.4
Dung, N.H.5
Kremer, K.6
-
46
-
-
0011793001
-
The clinical significance of low degrees of drug resistance in pulmonary tuberculosis
-
[46] Stewart, S.M., Crofton, J.W., The clinical significance of low degrees of drug resistance in pulmonary tuberculosis. Am Rev Respir Dis 89 (1964), 811–829.
-
(1964)
Am Rev Respir Dis
, vol.89
, pp. 811-829
-
-
Stewart, S.M.1
Crofton, J.W.2
-
47
-
-
84979544166
-
Determination of Minimum Inhibitory Concentration (MIC) Breakpoints for second-line drugs associated with clinical outcomes in multidrug-resistant tuberculosis treatment in China
-
[47] Zheng, X., Zheng, R., Hu, Y., Werngren, J., Davies Forsman, L., Mansjö, M., et al. Determination of Minimum Inhibitory Concentration (MIC) Breakpoints for second-line drugs associated with clinical outcomes in multidrug-resistant tuberculosis treatment in China. Antimicrob Agents Chemother 60:8 (2016), 4786–4792.
-
(2016)
Antimicrob Agents Chemother
, vol.60
, Issue.8
, pp. 4786-4792
-
-
Zheng, X.1
Zheng, R.2
Hu, Y.3
Werngren, J.4
Davies Forsman, L.5
Mansjö, M.6
-
48
-
-
79960700059
-
The ins and outs of Mycobacterium tuberculosis drug susceptibility testing
-
[48] Böttger, E.C., The ins and outs of Mycobacterium tuberculosis drug susceptibility testing. Clin Microbiol Infect 17 (2011), 1128–1134.
-
(2011)
Clin Microbiol Infect
, vol.17
, pp. 1128-1134
-
-
Böttger, E.C.1
-
49
-
-
84976353343
-
Detection and characterization of drug-resistant conferring genes in Mycobacterium tuberculosis complex strains: a prospective study in two distant regions of Ghana
-
[49] Otchere, I.D., Asante-Poku, A., Osei-Wusu, S., Baddoo, A., Sarpong, E., Ganiyu, A.H., et al. Detection and characterization of drug-resistant conferring genes in Mycobacterium tuberculosis complex strains: a prospective study in two distant regions of Ghana. Tuberculosis 99 (2016), 147–154.
-
(2016)
Tuberculosis
, vol.99
, pp. 147-154
-
-
Otchere, I.D.1
Asante-Poku, A.2
Osei-Wusu, S.3
Baddoo, A.4
Sarpong, E.5
Ganiyu, A.H.6
-
50
-
-
84555209977
-
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
-
[50] Comas, I., Borrell, S., Roetzer, A., Rose, G., Malla, B., Kato-Maeda, M., et al. Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes. Nat Genet 44 (2011), 106–110.
-
(2011)
Nat Genet
, vol.44
, pp. 106-110
-
-
Comas, I.1
Borrell, S.2
Roetzer, A.3
Rose, G.4
Malla, B.5
Kato-Maeda, M.6
-
51
-
-
84885003827
-
Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl
-
[51] Safi, H., Lingaraju, S., Amin, A., Kim, S., Jones, M., Holmes, M., et al. Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl. Nat Genet 45 (2013), 1190–1197.
-
(2013)
Nat Genet
, vol.45
, pp. 1190-1197
-
-
Safi, H.1
Lingaraju, S.2
Amin, A.3
Kim, S.4
Jones, M.5
Holmes, M.6
-
52
-
-
85017034995
-
Description of compensatory gyrA mutations restoring fluoroquinolone susceptibility in Mycobacterium tuberculosis
-
[52] Pantel, A., Petrella, S., Veziris, N., Matrat, S., Bouige, A., Ferrand, H., et al. Description of compensatory gyrA mutations restoring fluoroquinolone susceptibility in Mycobacterium tuberculosis. J Antimicrob Chemother 71:9 (2016), 2428–2431.
-
(2016)
J Antimicrob Chemother
, vol.71
, Issue.9
, pp. 2428-2431
-
-
Pantel, A.1
Petrella, S.2
Veziris, N.3
Matrat, S.4
Bouige, A.5
Ferrand, H.6
-
53
-
-
84979523473
-
Mutations in pepQ confer low-level resistance to bedaquiline and clofazimine in Mycobacterium tuberculosis
-
AAC.00753–16
-
[53] Almeida, D., Ioerger, T., Tyagi, S., Li, S.-Y., Mdluli, K., Andries, K., et al. Mutations in pepQ confer low-level resistance to bedaquiline and clofazimine in Mycobacterium tuberculosis. Antimicrob Agents Chemother, 2016 AAC.00753–16.
-
(2016)
Antimicrob Agents Chemother
-
-
Almeida, D.1
Ioerger, T.2
Tyagi, S.3
Li, S.-Y.4
Mdluli, K.5
Andries, K.6
-
54
-
-
35848961030
-
Antimicrobial susceptibility testing of Mycobacterium tuberculosis (EUCAST document E.DEF 8.1)–report of the Subcommittee on Antimicrobial Susceptibility Testing of Mycobacterium tuberculosis of the European Committee for Antimicrobial Susceptibility Testing (EUCAST) of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
-
[54] Drobniewski, F., Rusch-Gerdes, S., Hoffner, S., Subcommittee on Antimicrobial Susceptibility Testing of Mycobacterium tuberculosis of the European Committee for Antimicrobial Susceptibility Testing (EUCAST) of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID). Antimicrobial susceptibility testing of Mycobacterium tuberculosis (EUCAST document E.DEF 8.1)–report of the Subcommittee on Antimicrobial Susceptibility Testing of Mycobacterium tuberculosis of the European Committee for Antimicrobial Susceptibility Testing (EUCAST) of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID). Clin Microbiol Infect 13 (2007), 1144–1156.
-
(2007)
Clin Microbiol Infect
, vol.13
, pp. 1144-1156
-
-
Drobniewski, F.1
Rusch-Gerdes, S.2
Hoffner, S.3
-
55
-
-
84952009484
-
Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis
-
Dec 21
-
[55] Bradley, P., Gordon, N.C., Walker, T.M., Dunn, L., Heys, S., Huang, B., et al. Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis. Nat Commun, 6, 2015 Dec 21, 10063.
-
(2015)
Nat Commun
, vol.6
, pp. 10063
-
-
Bradley, P.1
Gordon, N.C.2
Walker, T.M.3
Dunn, L.4
Heys, S.5
Huang, B.6
-
56
-
-
84908067889
-
KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
-
[56] Steiner, A., Stucki, D., Coscolla, M., Borrell, S., Gagneux, S., KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes. BMC Genomics, 15, 2014, 881.
-
(2014)
BMC Genomics
, vol.15
, pp. 881
-
-
Steiner, A.1
Stucki, D.2
Coscolla, M.3
Borrell, S.4
Gagneux, S.5
-
57
-
-
84929335990
-
PhyResSE: a web tool delineating Mycobacterium tuberculosis antibiotic resistance and lineage from whole-genome sequencing data
-
[57] Feuerriegel, S., Schleusener, V., Beckert, P., Kohl, T.A., Miotto, P., Cirillo, D.M., et al. PhyResSE: a web tool delineating Mycobacterium tuberculosis antibiotic resistance and lineage from whole-genome sequencing data. J Clin Microbiol 53 (2015), 1908–1914.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 1908-1914
-
-
Feuerriegel, S.1
Schleusener, V.2
Beckert, P.3
Kohl, T.A.4
Miotto, P.5
Cirillo, D.M.6
-
58
-
-
84928019939
-
Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases
-
[58] Witney, A.A., Gould, K.A., Arnold, A., Coleman, D., Delgado, R., Dhillon, J., et al. Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases. J Clin Microbiol 53 (2015), 1473–1483.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 1473-1483
-
-
Witney, A.A.1
Gould, K.A.2
Arnold, A.3
Coleman, D.4
Delgado, R.5
Dhillon, J.6
-
59
-
-
84954517352
-
Xpert MTB/RIF versus sputum microscopy as the initial diagnostic test for tuberculosis: a cluster-randomised trial embedded in South African roll-out of Xpert MTB/RIF
-
[59] Churchyard, G.J., Stevens, W.S., Mametja, L.D., McCarthy, K.M., Chihota, V., Nicol, M.P., et al. Xpert MTB/RIF versus sputum microscopy as the initial diagnostic test for tuberculosis: a cluster-randomised trial embedded in South African roll-out of Xpert MTB/RIF. The Lancet Global Health 3 (2015), e450–e457.
-
(2015)
The Lancet Global Health
, vol.3
, pp. e450-e457
-
-
Churchyard, G.J.1
Stevens, W.S.2
Mametja, L.D.3
McCarthy, K.M.4
Chihota, V.5
Nicol, M.P.6
|