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Volumn 8, Issue 1, 2016, Pages

Genomic landscape of colorectal cancer in Japan: Clinical implications of comprehensive genomic sequencing for precision medicine

(28)  Nagahashi, Masayuki a   Wakai, Toshifumi a   Shimada, Yoshifumi a   Ichikawa, Hiroshi a   Kameyama, Hitoshi a   Kobayashi, Takashi a   Sakata, Jun a   Yagi, Ryoma a   Sato, Nobuaki b   Kitagawa, Yuko c   Uetake, Hiroyuki d   Yoshida, Kazuhiro e   Oki, Eiji f   Kudo, Shin ei g   Izutsu, Hiroshi h   Kodama, Keisuke h   Nakada, Mitsutaka h   Tse, Julie i   Russell, Meaghan i   Heyer, Joerg i   more..


Author keywords

Actionable driver mutation; Colorectal cancer; Comprehensive genomic sequencing; Ethnicity; Hypermutation; Japanese; Precision medicine

Indexed keywords

B RAF KINASE; EPIDERMAL GROWTH FACTOR RECEPTOR 2;

EID: 85006961094     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/s13073-016-0387-8     Document Type: Article
Times cited : (65)

References (44)
  • 2
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • Cancer Genome Atlas Research Network. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature. 2008;455:1061-8.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 3
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • Cancer Genome Atlas Research Network. Integrated genomic analyses of ovarian carcinoma. Nature. 2011;474:609-15.
    • (2011) Nature , vol.474 , pp. 609-615
  • 4
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature. 2012;487:330-7.
    • (2012) Nature , vol.487 , pp. 330-337
  • 5
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • Cancer Genome Atlas Research Network. Comprehensive genomic characterization of squamous cell lung cancers. Nature. 2012;489:519-25.
    • (2012) Nature , vol.489 , pp. 519-525
  • 6
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas Network. Comprehensive molecular portraits of human breast tumours. Nature. 2012;490:61-70.
    • (2012) Nature , vol.490 , pp. 61-70
  • 7
    • 84907270779 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of gastric adenocarcinoma
    • Cancer Genome Atlas Research Network. Comprehensive molecular characterization of gastric adenocarcinoma. Nature. 2014;513:202-9.
    • (2014) Nature , vol.513 , pp. 202-209
  • 8
    • 84923197605 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of head and neck squamous cell carcinomas
    • Cancer Genome Atlas Network. Comprehensive genomic characterization of head and neck squamous cell carcinomas. Nature. 2015;517:576-82.
    • (2015) Nature , vol.517 , pp. 576-582
  • 10
    • 84944079826 scopus 로고    scopus 로고
    • The genomic landscape of response to EGFR blockade in colorectal cancer
    • Bertotti A, Papp E, Jones S, Adleff V, Anagnostou V, Lupo B, et al. The genomic landscape of response to EGFR blockade in colorectal cancer. Nature. 2015;526:263-7.
    • (2015) Nature , vol.526 , pp. 263-267
    • Bertotti, A.1    Papp, E.2    Jones, S.3    Adleff, V.4    Anagnostou, V.5    Lupo, B.6
  • 12
    • 4444311092 scopus 로고    scopus 로고
    • BRAF screening as a low-cost effective strategy for simplifying HNPCC genetic testing
    • Domingo E, Laiho P, Ollikainen M, Pinto M, Wang L, French AJ, et al. BRAF screening as a low-cost effective strategy for simplifying HNPCC genetic testing. J Med Genet. 2004;41:664-8.
    • (2004) J Med Genet , vol.41 , pp. 664-668
    • Domingo, E.1    Laiho, P.2    Ollikainen, M.3    Pinto, M.4    Wang, L.5    French, A.J.6
  • 13
    • 50349091081 scopus 로고    scopus 로고
    • Prognostic significance of defective mismatch repair and BRAF V600E in patients with colon cancer
    • French AJ, Sargent DJ, Burgart LJ, Foster NR, Kabat BF, Goldberg R, et al. Prognostic significance of defective mismatch repair and BRAF V600E in patients with colon cancer. Clin Cancer Res. 2008;14:3408-15.
    • (2008) Clin Cancer Res , vol.14 , pp. 3408-3415
    • French, A.J.1    Sargent, D.J.2    Burgart, L.J.3    Foster, N.R.4    Kabat, B.F.5    Goldberg, R.6
  • 14
    • 84964314170 scopus 로고    scopus 로고
    • Clinicopathologic characteristics and gene expression analyses of non-KRAS 12/13, RAS-mutated metastatic colorectal cancer
    • Morris VK, Lucas FA, Overman MJ, Eng C, Morelli MP, Jiang ZQ, et al. Clinicopathologic characteristics and gene expression analyses of non-KRAS 12/13, RAS-mutated metastatic colorectal cancer. Ann Oncol. 2014;25:2008-14.
    • (2014) Ann Oncol , vol.25 , pp. 2008-2014
    • Morris, V.K.1    Lucas, F.A.2    Overman, M.J.3    Eng, C.4    Morelli, M.P.5    Jiang, Z.Q.6
  • 15
    • 84904383595 scopus 로고    scopus 로고
    • Next-generation sequencing analysis of lung and colon carcinomas reveals a variety of genetic alterations
    • Chevrier S, Arnould L, Ghiringhelli F, Coudert B, Fumoleau P, Boidot R. Next-generation sequencing analysis of lung and colon carcinomas reveals a variety of genetic alterations. Int J Oncol. 2014;45:1167-74.
    • (2014) Int J Oncol , vol.45 , pp. 1167-1174
    • Chevrier, S.1    Arnould, L.2    Ghiringhelli, F.3    Coudert, B.4    Fumoleau, P.5    Boidot, R.6
  • 16
    • 84862776857 scopus 로고    scopus 로고
    • Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies
    • Lipson D, Capelletti M, Yelensky R, Otto G, Parker A, Jarosz M, et al. Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies. Nat Med. 2012;18:382-4.
    • (2012) Nat Med , vol.18 , pp. 382-384
    • Lipson, D.1    Capelletti, M.2    Yelensky, R.3    Otto, G.4    Parker, A.5    Jarosz, M.6
  • 17
    • 84876064523 scopus 로고    scopus 로고
    • Targeted next-generation sequencing of advanced prostate cancer identifies potential therapeutic targets and disease heterogeneity
    • Beltran H, Yelensky R, Frampton GM, Park K, Downing SR, MacDonald TY, et al. Targeted next-generation sequencing of advanced prostate cancer identifies potential therapeutic targets and disease heterogeneity. Eur Urol. 2013;63:920-6.
    • (2013) Eur Urol , vol.63 , pp. 920-926
    • Beltran, H.1    Yelensky, R.2    Frampton, G.M.3    Park, K.4    Downing, S.R.5    MacDonald, T.Y.6
  • 18
    • 84975034844 scopus 로고    scopus 로고
    • A multigene mutation classification of 468 colorectal cancers reveals a prognostic role for APC
    • Schell MJ, Yang M, Teer JK, Lo FY, Madan A, Coppola D, et al. A multigene mutation classification of 468 colorectal cancers reveals a prognostic role for APC. Nat Commun. 2016;7:11743.
    • (2016) Nat Commun , vol.7 , pp. 11743
    • Schell, M.J.1    Yang, M.2    Teer, J.K.3    Lo, F.Y.4    Madan, A.5    Coppola, D.6
  • 20
    • 84920285505 scopus 로고    scopus 로고
    • Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions
    • Brannon AR, Vakiani E, Sylvester BE, Scott SN, McDermott G, Shah RH, et al. Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions. Genome Biol. 2014;15:454.
    • (2014) Genome Biol , vol.15 , pp. 454
    • Brannon, A.R.1    Vakiani, E.2    Sylvester, B.E.3    Scott, S.N.4    McDermott, G.5    Shah, R.H.6
  • 22
    • 84979574426 scopus 로고    scopus 로고
    • The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine
    • Garofalo A, Sholl L, Reardon B, Taylor-Weiner A, Amin-Mansour A, Miao D, et al. The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine. Genome Med. 2016;8:79.
    • (2016) Genome Med , vol.8 , pp. 79
    • Garofalo, A.1    Sholl, L.2    Reardon, B.3    Taylor-Weiner, A.4    Amin-Mansour, A.5    Miao, D.6
  • 23
    • 84947743770 scopus 로고    scopus 로고
    • SomaticSignatures: inferring mutational signatures from single-nucleotide variants
    • Gehring JS, Fischer B, Lawrence M, Huber W. SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinformatics. 2015;31:3673-5.
    • (2015) Bioinformatics , vol.31 , pp. 3673-3675
    • Gehring, J.S.1    Fischer, B.2    Lawrence, M.3    Huber, W.4
  • 24
    • 84959467752 scopus 로고    scopus 로고
    • deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
    • Rosenthal R, McGranahan N, Herrero J, Taylor BS, Swanton C. deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution. Genome Biol. 2016;17:31.
    • (2016) Genome Biol , vol.17 , pp. 31
    • Rosenthal, R.1    McGranahan, N.2    Herrero, J.3    Taylor, B.S.4    Swanton, C.5
  • 25
    • 85017399025 scopus 로고    scopus 로고
    • Determination of minimum sample size for fault diagnosis of automobile hydraulic brake system using power analysis
    • Indira V, Vasanthakumari R, Jegadeeshwaran R, Sugumaran V. Determination of minimum sample size for fault diagnosis of automobile hydraulic brake system using power analysis. Eng Sci Technol Int J. 2015;18:59-69.
    • (2015) Eng Sci Technol Int J , vol.18 , pp. 59-69
    • Indira, V.1    Vasanthakumari, R.2    Jegadeeshwaran, R.3    Sugumaran, V.4
  • 26
    • 84938394693 scopus 로고    scopus 로고
    • Racial variation in frequency and phenotypes of APC and MUTYH mutations in 6,169 individuals undergoing genetic testing
    • Inra JA, Steyerberg EW, Grover S, McFarland A, Syngal S, Kastrinos F. Racial variation in frequency and phenotypes of APC and MUTYH mutations in 6,169 individuals undergoing genetic testing. Genet Med. 2015;17:815-21.
    • (2015) Genet Med , vol.17 , pp. 815-821
    • Inra, J.A.1    Steyerberg, E.W.2    Grover, S.3    McFarland, A.4    Syngal, S.5    Kastrinos, F.6
  • 27
    • 51049110943 scopus 로고    scopus 로고
    • Dietary calcium and cholecalciferol modulate cyclin D1 expression, apoptosis, and tumorigenesis in intestine of adenomatous polyposis coli1638N/+ mice
    • Yang K, Lamprecht SA, Shinozaki H, Fan K, Yang W, Newmark HL, et al. Dietary calcium and cholecalciferol modulate cyclin D1 expression, apoptosis, and tumorigenesis in intestine of adenomatous polyposis coli1638N/+ mice. J Nutr. 2008;138:1658-63.
    • (2008) J Nutr , vol.138 , pp. 1658-1663
    • Yang, K.1    Lamprecht, S.A.2    Shinozaki, H.3    Fan, K.4    Yang, W.5    Newmark, H.L.6
  • 28
    • 84921367731 scopus 로고    scopus 로고
    • Synthetic lethality and cancer therapy: lessons learned from the development of PARP inhibitors
    • Lord CJ, Tutt AN, Ashworth A. Synthetic lethality and cancer therapy: lessons learned from the development of PARP inhibitors. Annu Rev Med. 2015;66:455-70.
    • (2015) Annu Rev Med , vol.66 , pp. 455-470
    • Lord, C.J.1    Tutt, A.N.2    Ashworth, A.3
  • 29
    • 67650471685 scopus 로고    scopus 로고
    • Inhibition of poly(ADP-ribose) polymerase in tumors from BRCA mutation carriers
    • Fong PC, Boss DS, Yap TA, Tutt A, Wu P, Mergui-Roelvink M, et al. Inhibition of poly(ADP-ribose) polymerase in tumors from BRCA mutation carriers. N Engl J Med. 2009;361:123-34.
    • (2009) N Engl J Med , vol.361 , pp. 123-134
    • Fong, P.C.1    Boss, D.S.2    Yap, T.A.3    Tutt, A.4    Wu, P.5    Mergui-Roelvink, M.6
  • 31
    • 84928761118 scopus 로고    scopus 로고
    • Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer
    • Rizvi NA, Hellmann MD, Snyder A, Kvistborg P, Makarov V, Havel JJ, et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science. 2015;348:124-8.
    • (2015) Science , vol.348 , pp. 124-128
    • Rizvi, N.A.1    Hellmann, M.D.2    Snyder, A.3    Kvistborg, P.4    Makarov, V.5    Havel, J.J.6
  • 33
    • 84887924524 scopus 로고    scopus 로고
    • The landscape of microsatellite instability in colorectal and endometrial cancer genomes
    • Kim TM, Laird PW, Park PJ. The landscape of microsatellite instability in colorectal and endometrial cancer genomes. Cell. 2013;155:858-68.
    • (2013) Cell , vol.155 , pp. 858-868
    • Kim, T.M.1    Laird, P.W.2    Park, P.J.3
  • 34
    • 84891102589 scopus 로고    scopus 로고
    • Mutational signatures: the patterns of somatic mutations hidden in cancer genomes
    • Alexandrov LB, Stratton MR. Mutational signatures: the patterns of somatic mutations hidden in cancer genomes. Curr Opin Genet Dev. 2014;24:52-60.
    • (2014) Curr Opin Genet Dev , vol.24 , pp. 52-60
    • Alexandrov, L.B.1    Stratton, M.R.2
  • 35
    • 52949092457 scopus 로고    scopus 로고
    • Impact of BRAF, MLH1 on the incidence of microsatellite instability high colorectal cancer in populations based study
    • Brim H, Mokarram P, Naghibalhossaini F, Saberi-Firoozi M, Al-Mandhari M, Al-Mawaly K, et al. Impact of BRAF, MLH1 on the incidence of microsatellite instability high colorectal cancer in populations based study. Mol Cancer. 2008;7:68.
    • (2008) Mol Cancer , vol.7 , pp. 68
    • Brim, H.1    Mokarram, P.2    Naghibalhossaini, F.3    Saberi-Firoozi, M.4    Al-Mandhari, M.5    Al-Mawaly, K.6
  • 36
    • 84863823736 scopus 로고    scopus 로고
    • Association between methylation in mismatch repair genes, V600E BRAF mutation and microsatellite instability in colorectal cancer patients
    • Rasuck CG, Leite SM, Komatsuzaki F, Ferreira AC, Oliveira VC, Gomes KB. Association between methylation in mismatch repair genes, V600E BRAF mutation and microsatellite instability in colorectal cancer patients. Mol Biol Rep. 2012;39:2553-60.
    • (2012) Mol Biol Rep , vol.39 , pp. 2553-2560
    • Rasuck, C.G.1    Leite, S.M.2    Komatsuzaki, F.3    Ferreira, A.C.4    Oliveira, V.C.5    Gomes, K.B.6
  • 37
    • 84867033254 scopus 로고    scopus 로고
    • Proximal colon cancers and the serrated pathway: a systematic analysis of precursor histology and BRAF mutation status
    • Patil DT, Shadrach BL, Rybicki LA, Leach BH, Pai RK. Proximal colon cancers and the serrated pathway: a systematic analysis of precursor histology and BRAF mutation status. Mod Pathol. 2012;25:1423-31.
    • (2012) Mod Pathol , vol.25 , pp. 1423-1431
    • Patil, D.T.1    Shadrach, B.L.2    Rybicki, L.A.3    Leach, B.H.4    Pai, R.K.5
  • 38
    • 74849109743 scopus 로고    scopus 로고
    • Kinase-dead BRAF and oncogenic RAS cooperate to drive tumor progression through CRAF
    • Heidorn SJ, Milagre C, Whittaker S, Nourry A, Niculescu-Duvas I, Dhomen N, et al. Kinase-dead BRAF and oncogenic RAS cooperate to drive tumor progression through CRAF. Cell. 2010;140:209-21.
    • (2010) Cell , vol.140 , pp. 209-221
    • Heidorn, S.J.1    Milagre, C.2    Whittaker, S.3    Nourry, A.4    Niculescu-Duvas, I.5    Dhomen, N.6
  • 40
    • 84915809785 scopus 로고    scopus 로고
    • Crosstalk of oncogenic signaling pathways during epithelial-mesenchymal transition
    • Lindsey S, Langhans SA. Crosstalk of oncogenic signaling pathways during epithelial-mesenchymal transition. Front Oncol. 2014;4:358.
    • (2014) Front Oncol , vol.4 , pp. 358
    • Lindsey, S.1    Langhans, S.A.2
  • 41
    • 84940579204 scopus 로고    scopus 로고
    • Claudin-7 expression induces mesenchymal to epithelial transformation (MET) to inhibit colon tumorigenesis
    • Bhat AA, Pope JL, Smith JJ, Ahmad R, Chen X, Washington MK, et al. Claudin-7 expression induces mesenchymal to epithelial transformation (MET) to inhibit colon tumorigenesis. Oncogene. 2015;34:4570-80.
    • (2015) Oncogene , vol.34 , pp. 4570-4580
    • Bhat, A.A.1    Pope, J.L.2    Smith, J.J.3    Ahmad, R.4    Chen, X.5    Washington, M.K.6
  • 42
    • 75749102647 scopus 로고    scopus 로고
    • Prognostic role of KRAS and BRAF in stage II and III resected colon cancer: results of the translational study on the PETACC-3, EORTC 40993, SAKK 60-00 trial
    • Roth AD, Tejpar S, Delorenzi M, Yan P, Fiocca R, Klingbiel D, et al. Prognostic role of KRAS and BRAF in stage II and III resected colon cancer: results of the translational study on the PETACC-3, EORTC 40993, SAKK 60-00 trial. J Clin Oncol. 2010;28:466-74.
    • (2010) J Clin Oncol , vol.28 , pp. 466-474
    • Roth, A.D.1    Tejpar, S.2    Delorenzi, M.3    Yan, P.4    Fiocca, R.5    Klingbiel, D.6
  • 43
    • 77955277111 scopus 로고    scopus 로고
    • Effects of KRAS, BRAF, NRAS, and PIK3CA mutations on the efficacy of cetuximab plus chemotherapy in chemotherapy-refractory metastatic colorectal cancer: a retrospective consortium analysis
    • De Roock W, Claes B, Bernasconi D, De Schutter J, Biesmans B, Fountzilas G, et al. Effects of KRAS, BRAF, NRAS, and PIK3CA mutations on the efficacy of cetuximab plus chemotherapy in chemotherapy-refractory metastatic colorectal cancer: a retrospective consortium analysis. Lancet Oncol. 2010;11:753-62.
    • (2010) Lancet Oncol , vol.11 , pp. 753-762
    • Roock, W.1    Claes, B.2    Bernasconi, D.3    Schutter, J.4    Biesmans, B.5    Fountzilas, G.6
  • 44
    • 84949673483 scopus 로고    scopus 로고
    • Clinical validation of a multiplex kit for RAS mutations in colorectal cancer: Results of the RASKET (RAS KEy Testing) Prospective, Multicenter Study
    • Yoshino T, Muro K, Yamaguchi K, Nishina T, Denda T, Kudo T, et al. Clinical validation of a multiplex kit for RAS mutations in colorectal cancer: Results of the RASKET (RAS KEy Testing) Prospective, Multicenter Study. EBioMed. 2015;2:317-23.
    • (2015) EBioMed , vol.2 , pp. 317-323
    • Yoshino, T.1    Muro, K.2    Yamaguchi, K.3    Nishina, T.4    Denda, T.5    Kudo, T.6


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