Five colour variants of bright luminescent protein for real-time multicolour bioimaging

Nature Communications

Volumn 7, Issue , 2016, Pages

  Suzuki, Kazushi ^a   Kimura, Taichi ^a   Shinoda, Hajime ^a   Bai, Guirong ^a   Daniels, Matthew J ^b   Arai, Yoshiyuki ^a   Nakano, Masahiro ^a   Nagai, Takeharu ^a  

^a OSAKA UNIVERSITY   (Japan)

^b JOHN RADCLIFFE HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CALCIUM ION; CALMODULIN; CYAN FLUORESCENT PROTEIN; FURA 2; GREEN FLUORESCENT PROTEIN; HISTONE H2B; LUCIFERASE; LYSOSOME ASSOCIATED MEMBRANE PROTEIN; NANOLUCIFERASE; ORANGE FLUORESCENT PROTEIN; PHOTOPROTEIN; RED FLUORESCENT PROTEIN; UNCLASSIFIED DRUG; YELLOW FLUORESCENT PROTEIN;

BIOACTIVITY; CELLS AND CELL COMPONENTS; COLOR; EXPERIMENTAL STUDY; GENE EXPRESSION; IMAGING METHOD; NUMERICAL MODEL; PROTEIN; REAL TIME;

ANIMAL TISSUE; ARTICLE; CARDIAC IMAGING; CARDIAC MUSCLE CELL; CONTROLLED STUDY; ENERGY TRANSFER; FORSTER RESONANCE ENERGY TRANSFER; HUMAN; HUMAN CELL; IMAGE ANALYSIS; LUMINESCENCE; MOLECULAR DYNAMICS; NERVE CELL; NONHUMAN; PROTEIN EXPRESSION; RAT; REAL TIME MULTICOLOUR BIOIMAGING; CALCIUM SIGNALING; CHEMISTRY; COLOR; FLUORESCENCE IMAGING; HELA CELL LINE; METABOLISM; PROCEDURES;

CALCIUM; CALCIUM SIGNALING; COLOR; HELA CELLS; HUMANS; LUMINESCENT PROTEINS; MYOCYTES, CARDIAC; NEURONS; OPTICAL IMAGING;

EID: 85005950995     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms13718     Document Type: Article

References (40)

1. Loening, A. M., Fenn, T. D., Wu, A. M., Gambhir, S. S. Consensus guided mutagenesis of Renilla luciferase yields enhanced stability and light output. Protein Eng. Des. Sel. 19, 391-400 (2006).
2. Degeling, M. H. et al. Directed molecular evolution reveals Gaussia luciferase variants with enhanced light output stability. Anal. Chem. 85, 3006-3012 (2013).
3. Inouye, S., Watanabe, K., Nakamura, H., Shimomura, O. Secretional luciferase of the luminous shrimp Oplophorus gracilirostris: cDNA cloning of a novel imidazopyrazinone luciferase(1). FEBS Lett. 481, 19-25 (2000).
4. Hall, M. P. et al. Engineered luciferase reporter from a deep sea shrimp utilizing a novel imidazopyrazinone substrate. ACS Chem. Biol. 7, 1848-1857 (2012).
5. Saito, K., Nagai, T. Recent progress in luminescent proteins development. Curr. Opin. Chem. Biol. 27, 46-51 (2015).
6. England, C. G., Ehlerding, E. B., Cai, W. NanoLuc: a small luciferase is brightening up the field of bioluminescence. Bioconjug. Chem. 27, 1175-1187 (2016).
7. Loening, A. M., Wu, A. M., Gambhir, S. S. Red-shifted Renilla reniformis luciferase variants for imaging in living subjects. Nat. Methods 4, 641-643 (2007).
8. Hoshino, H., Nakajima, Y., Ohmiya, Y. Luciferase-YFP fusion tag with enhanced emission for single-cell luminescence imaging. Nat. Methods 4, 637-639 (2007).
9. Saito, K. et al. Luminescent proteins for high-speed single-cell and whole-body imaging. Nat. Commun 3, 1262 (2012).
10. Takai, A. et al. Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging. Proc. Natl Acad. Sci. USA 112, 4352-4356 (2015).
11. Goedhart, J. et al. Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93%. Nat. Commun 3, 751 (2012).
12. Shaner, N. C. et al. A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum. Nat. Methods 10, 407-409 (2013).
13. Nagai, T. et al. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat. Biotechnol. 20, 87-90 (2002).
14. Tsutsui, H., Karasawa, S., Okamura, Y., Miyawaki, A. Improving membrane voltage measurements using FRET with new fluorescent proteins. Nat. Methods 5, 683-685 (2008).
15. Shaner, N. C. et al. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol. 22, 1567-1572 (2004).
16. Khan, F., He, M. Y., Taussig, M. J. Double-hexahistidine tag with high-affinity binding for protein immobilization, purification, detection on Ninitrilotriacetic acid surfaces. Anal. Chem. 78, 3072-3079 (2006).
17. Sharonov, A., Hochstrasser, R. M. Wide-field subdiffraction imaging by accumulated binding of diffusing probes. Proc. Natl Acad. Sci. USA 103, 18911-18916 (2006).
18. Doyon, J. B. et al. Rapid and efficient clathrin-mediated endocytosis revealed in genome-edited mammalian cells. Nat. Cell Biol. 13, 331-337 (2011).
19. Fotin, A. et al. Molecular model for a complete clathrin lattice from electron cryomicroscopy. Nature 432, 573-579 (2004).
20. Kaihara, A., Umezawa, Y., Furukawa, T. Bioluminescent indicators for Ca2\+ based on split Renilla luciferase complementation in living cells. Anal. Sci. 24, 1405-1408 (2008).
21. Horikawa, K. et al. Spontaneous network activity visualized by ultrasensitive Ca(2\+) indicators, yellow Cameleon-Nano. Nat. Methods 7, 729-732 (2010).
22. Tian, L. et al. Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators. Nat. Methods 6, 875-881 (2009).
23. Grynkiewicz, G., Poenie, M., Tsien, R. Y. A new generation of Ca2\+ indicators with greatly improved fluorescence properties. J. Biol. Chem. 260, 3440-3450 (1985).
24. Kaestner, L. et al. Genetically encoded Ca2\+ indicators in cardiac myocytes. Circ. Res. 114, 1623-1639 (2014).
25. Leyton-Mange, J. S. et al. Rapid cellular phenotyping of human pluripotent stem cell-derived cardiomyocytes using a genetically encoded fluorescent voltage sensor. Stem Cell Rep 2, 163-170 (2014).
26. Taglialatela, M. et al. Molecular basis for the lack of HERG K\+ channel blockrelated cardiotoxicity by the H1 receptor blocker cetirizine compared with other second-generation antihistamines. Mol. Pharmacol. 54, 113-121 (1998).
27. Dubuisson, M. L. et al. Antioxidative properties of natural coelenterazine and synthetic methyl coelenterazine in rat hepatocytes subjected to tert-butyl hydroperoxide-induced oxidative stress. Biochem. Pharmacol. 60, 471-478 (2000).
28. Pichler, A., Prior, J. L., Piwnica-Worms, D. Imaging reversal of multidrug resistance in living mice with bioluminescence: MDR1 P-glycoprotein transports coelenterazine. Proc. Natl Acad. Sci. USA 101, 1702-1707 (2004).
29. Stacer, A. C. et al. NanoLuc reporter for dual luciferase imaging in living animals. Mol. Imaging 12, 1-13 (2013).
30. Roy, A., Kucukural, A., Zhang, Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 5, 725-738 (2010).
31. Pettersen, E. F. et al. UCSF chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
32. Nagai, T., Miyawaki, A. A high-throughput method for development of FRET-based indicators for proteolysis. Biochem. Biophys. Res. Commun. 319, 72-77 (2004).
33. Matsuda, T., Miyawaki, A., Nagai, T. Direct measurement of protein dynamics inside cells using a rationally designed photoconvertible protein. Nat. Methods 5, 339-345 (2008).
34. Tiwari, D. K. et al. A fast-and positively photoswitchable fluorescent protein for ultralow-laser-power RESOLFT nanoscopy. Nat. Methods 12, 515-518 (2015).
35. Ando, Y. et al. Development of a quantitative bio/chemiluminescence spectrometer determining quantum yields: re-examination of the aqueous luminol chemiluminescence standard. Photochem. Photobiol. 83, 1205-1210 (2007).
36. Watanabe, R. et al. Biased Brownian stepping rotation of FoF1-ATP synthase driven by proton motive force. Nat. Commun 4, 1631 (2013).
37. Zhao, Y. et al. An expanded palette of genetically encoded Ca2\+ indicators. Science 333, 1888-1891 (2011).
38. Sawano, A., Miyawaki, A. Directed evolution of green fluorescent protein by a new versatile PCR strategy for site-directed and semi-random mutagenesis. Nucleic Acids Res. 28, E78 (2000).
39. Grimm, D. et al. In vitro and in vivo gene therapy vector evolution via multispecies interbreeding and retargeting of adeno-associated viruses. J. Virol. 82, 5887-5911 (2008).
40. Burridge, P. W. et al. A universal system for highly efficient cardiac differentiation of human induced pluripotent stem cells that eliminates interline variability. PLoS One 6, e18293 (2011).