-
1
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira S, Uematsu S, Takeuchi O. Pathogen recognition and innate immunity. Cell. 2006;124:783-801.
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
2
-
-
0035795985
-
An overview of the immune system
-
Parkin J, Cohen B. An overview of the immune system. Lancet. 2001;357:1777-89.
-
(2001)
Lancet
, vol.357
, pp. 1777-1789
-
-
Parkin, J.1
Cohen, B.2
-
4
-
-
72849115174
-
Origin and evolution of the adaptive immune system: genetic events and selective pressures
-
Flajnik MF, Kasahara M. Origin and evolution of the adaptive immune system: genetic events and selective pressures. Nat Rev Genet. 2010;11:47-59.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 47-59
-
-
Flajnik, M.F.1
Kasahara, M.2
-
5
-
-
34548842785
-
The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss
-
Miller DJ, Hemmrich G, Ball EE, Hayward DC, Khalturin K, Funayama N, et al. The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss. Genome Biol. 2007;8:R59.
-
(2007)
Genome Biol
, vol.8
, pp. R59
-
-
Miller, D.J.1
Hemmrich, G.2
Ball, E.E.3
Hayward, D.C.4
Khalturin, K.5
Funayama, N.6
-
6
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science. 2007;317:86-94.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
Salamov, A.6
-
7
-
-
84891816495
-
The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals
-
Yuen B, Bayes JM, Degnan SM. The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals. Mol Biol Evol. 2014;31:106-20.
-
(2014)
Mol Biol Evol
, vol.31
, pp. 106-120
-
-
Yuen, B.1
Bayes, J.M.2
Degnan, S.M.3
-
8
-
-
77957129335
-
The genome of the sponge Amphimedon queenslandica provides new perspectives into the origin of Toll-like and interleukin 1 receptor pathways
-
Gauthier MEA, Du Pasquier L, Degnan BM. The genome of the sponge Amphimedon queenslandica provides new perspectives into the origin of Toll-like and interleukin 1 receptor pathways. Evol Dev. 2010;12:519-33.
-
(2010)
Evol Dev
, vol.12
, pp. 519-533
-
-
Gauthier, M.E.A.1
Pasquier, L.2
Degnan, B.M.3
-
9
-
-
27744503847
-
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
-
Technau U, Rudd S, Maxwell P, Gordon PMK, Saina M, Grasso LC, et al. Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends Genet. 2005;21:633-9.
-
(2005)
Trends Genet
, vol.21
, pp. 633-639
-
-
Technau, U.1
Rudd, S.2
Maxwell, P.3
Gordon, P.M.K.4
Saina, M.5
Grasso, L.C.6
-
10
-
-
84918822382
-
Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes
-
Buckley KM, Rast JP. Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes. Dev Comp Immunol. 2015;49:179-89.
-
(2015)
Dev Comp Immunol
, vol.49
, pp. 179-189
-
-
Buckley, K.M.1
Rast, J.P.2
-
11
-
-
84903554155
-
TIR-domain-containing protein repertoire of nine anthozoan species reveals coral-specific expansions and uncharacterized proteins
-
Poole AZ, Weis VM. TIR-domain-containing protein repertoire of nine anthozoan species reveals coral-specific expansions and uncharacterized proteins. Dev Comp Immunol. 2014;46:480-8.
-
(2014)
Dev Comp Immunol
, vol.46
, pp. 480-488
-
-
Poole, A.Z.1
Weis, V.M.2
-
12
-
-
77951251364
-
Domain architecture evolution of pattern-recognition receptors
-
Zhang Q, Zmasek CM, Godzik A. Domain architecture evolution of pattern-recognition receptors. Immunogenetics. 2010;62:263-72.
-
(2010)
Immunogenetics
, vol.62
, pp. 263-272
-
-
Zhang, Q.1
Zmasek, C.M.2
Godzik, A.3
-
13
-
-
84930010431
-
Massive expansion and functional divergence of innate immune genes in a protostome
-
Zhang L, Li L, Guo X, Litman GW, Dishaw LJ, Zhang G. Massive expansion and functional divergence of innate immune genes in a protostome. Sci Rep. 2015;5:8693. Available from: http://www.nature.com/srep/2015/150303/srep08693/full/srep08693.html.
-
(2015)
Sci Rep
, vol.5
, pp. 8693
-
-
Zhang, L.1
Li, L.2
Guo, X.3
Litman, G.W.4
Dishaw, L.J.5
Zhang, G.6
-
14
-
-
40449140937
-
The NLR gene family: a standard nomenclature
-
Ting JP-Y, Lovering RC, Alnemri ES, Bertin J, Boss JM, Davis BK, et al. The NLR gene family: a standard nomenclature. Immunity. 2008;28:285-7.
-
(2008)
Immunity
, vol.28
, pp. 285-287
-
-
Ting, J.-Y.1
Lovering, R.C.2
Alnemri, E.S.3
Bertin, J.4
Boss, J.M.5
Davis, B.K.6
-
15
-
-
84871832159
-
The complex NOD-Like receptor repertoire of the coral Acropora digitifera includes novel domain combinations
-
Hamada M, Shoguchi E, Shinzato C, Kawashima T, Miller DJ, Satoh N. The complex NOD-Like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Mol Biol Evol. 2013;30:167-76.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 167-176
-
-
Hamada, M.1
Shoguchi, E.2
Shinzato, C.3
Kawashima, T.4
Miller, D.J.5
Satoh, N.6
-
16
-
-
79955371585
-
Defining the origins of the NOD-Like receptor system at the base of animal evolution
-
Lange C, Hemmrich G, Klostermeier UC, Lopez-Quintero JA, Miller DJ, Rahn T, et al. Defining the origins of the NOD-Like receptor system at the base of animal evolution. Mol Biol Evol. 2011;28:1687-702.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1687-1702
-
-
Lange, C.1
Hemmrich, G.2
Klostermeier, U.C.3
Lopez-Quintero, J.A.4
Miller, D.J.5
Rahn, T.6
-
17
-
-
84860227203
-
Domain combination of the vertebrate-like TLR gene family: implications for their origin and evolution
-
Wu B, Huan T, Gong J, Zhou P, Bai Z. Domain combination of the vertebrate-like TLR gene family: implications for their origin and evolution. J Genet. 2011;90:401-8.
-
(2011)
J Genet
, vol.90
, pp. 401-408
-
-
Wu, B.1
Huan, T.2
Gong, J.3
Zhou, P.4
Bai, Z.5
-
18
-
-
84869848890
-
MyD88-deficient hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers
-
Franzenburg S, Fraune S, Künzel S, Baines JF, Domazet-Loso T, Bosch TCG. MyD88-deficient hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers. Proc Natl Acad Sci U S A. 2012;109:19374-9.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 19374-19379
-
-
Franzenburg, S.1
Fraune, S.2
Künzel, S.3
Baines, J.F.4
Domazet-Loso, T.5
Bosch, T.C.G.6
-
19
-
-
58649118864
-
Uncovering the evolutionary history of innate immunity: the simple metazoan Hydra uses epithelial cells for host defence
-
Bosch TCG, Augustin R, Anton-Erxleben F, Fraune S, Hemmrich G, Zill H, et al. Uncovering the evolutionary history of innate immunity: the simple metazoan Hydra uses epithelial cells for host defence. Dev Comp Immunol. 2009;33:559-69.
-
(2009)
Dev Comp Immunol
, vol.33
, pp. 559-569
-
-
Bosch, T.C.G.1
Augustin, R.2
Anton-Erxleben, F.3
Fraune, S.4
Hemmrich, G.5
Zill, H.6
-
21
-
-
79960708831
-
CNIDARIAN IMMUNITY: A Tale of Two Barriers
-
In: Soderhall K, editor, Berlin: Springer-Verlag Berlin
-
Augustin R, Bosch TCG. CNIDARIAN IMMUNITY: A Tale of Two Barriers. In: Soderhall K, editor. Invertebrate Immunity. Berlin: Springer-Verlag Berlin; 2010. p. 1-16.
-
(2010)
Invertebrate Immunity
, pp. 1-16
-
-
Augustin, R.1
Bosch, T.C.G.2
-
22
-
-
28844484051
-
The evolution of metazoan axial properties
-
Martindale MQ. The evolution of metazoan axial properties. Nat Rev Genet. 2005;6:917-27.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 917-927
-
-
Martindale, M.Q.1
-
23
-
-
84884520631
-
Cnidarian-microbe interactions and the origin of innate immunity in metazoans
-
Bosch TCG. Cnidarian-microbe interactions and the origin of innate immunity in metazoans. Annu Rev Microbiol. 2013;67:499-518.
-
(2013)
Annu Rev Microbiol
, vol.67
, pp. 499-518
-
-
Bosch, T.C.G.1
-
25
-
-
80051936630
-
Using the Acropora digitifera genome to understand coral responses to environmental change
-
Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, et al. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature. 2011;476:320-3.
-
(2011)
Nature
, vol.476
, pp. 320-323
-
-
Shinzato, C.1
Shoguchi, E.2
Kawashima, T.3
Hamada, M.4
Hisata, K.5
Tanaka, M.6
-
26
-
-
77950080387
-
The dynamic genome of Hydra
-
Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, et al. The dynamic genome of Hydra. Nature. 2010;464:592-6.
-
(2010)
Nature
, vol.464
, pp. 592-596
-
-
Chapman, J.A.1
Kirkness, E.F.2
Simakov, O.3
Hampson, S.E.4
Mitros, T.5
Weinmaier, T.6
-
27
-
-
84942930437
-
The genome of Aiptasia, a sea anemone model for coral symbiosis
-
Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM, Michell CT, et al. The genome of Aiptasia, a sea anemone model for coral symbiosis. Proc Natl Acad Sci U S A. 2015;112(38):11893-8. 201513318.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, Issue.38
, pp. 11893-11898
-
-
Baumgarten, S.1
Simakov, O.2
Esherick, L.Y.3
Liew, Y.J.4
Lehnert, E.M.5
Michell, C.T.6
-
28
-
-
19944432478
-
Unexpected complexity of the Wnt gene family in a sea anemone
-
Kusserow A, Pang K, Sturm C, Hrouda M, Lentfer J, Schmidt HA, et al. Unexpected complexity of the Wnt gene family in a sea anemone. Nature. 2005;433:156-60.
-
(2005)
Nature
, vol.433
, pp. 156-160
-
-
Kusserow, A.1
Pang, K.2
Sturm, C.3
Hrouda, M.4
Lentfer, J.5
Schmidt, H.A.6
-
29
-
-
33749402982
-
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
-
Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR. The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis. Genome Biol. 2006;7:R64.
-
(2006)
Genome Biol
, vol.7
, pp. R64
-
-
Ryan, J.F.1
Burton, P.M.2
Mazza, M.E.3
Kwong, G.K.4
Mullikin, J.C.5
Finnerty, J.R.6
-
30
-
-
0347033327
-
EST analysis of the Cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
-
Kortschak RD, Samuel G, Saint R, Miller DJ. EST analysis of the Cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Curr Biol. 2003;13:2190-5.
-
(2003)
Curr Biol
, vol.13
, pp. 2190-2195
-
-
Kortschak, R.D.1
Samuel, G.2
Saint, R.3
Miller, D.J.4
-
31
-
-
0345118282
-
Roc, a Ras/GTPase domain in complex proteins
-
Bosgraaf L, Van Haastert PJM. Roc, a Ras/GTPase domain in complex proteins. Biochim Biophys Acta. 2003;1643:5-10.
-
(2003)
Biochim Biophys Acta
, vol.1643
, pp. 5-10
-
-
Bosgraaf, L.1
Haastert, P.J.M.2
-
32
-
-
84891782659
-
Pfam: the protein families database
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, et al. Pfam: the protein families database. Nucl Acids Res. 2014;42:D222-30.
-
(2014)
Nucl Acids Res
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
-
33
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang Z, Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol. 2000;17:32-43.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
34
-
-
29644438009
-
Identification and characterization of a novel bacterial virulence factor that shares homology with mammalian toll/interleukin-1 receptor family proteins
-
Newman RM, Salunkhe P, Godzik A, Reed JC. Identification and characterization of a novel bacterial virulence factor that shares homology with mammalian toll/interleukin-1 receptor family proteins. Infect Immun. 2006;74:594-601.
-
(2006)
Infect Immun
, vol.74
, pp. 594-601
-
-
Newman, R.M.1
Salunkhe, P.2
Godzik, A.3
Reed, J.C.4
-
35
-
-
84867088834
-
The oyster genome reveals stress adaptation and complexity of shell formation
-
Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature. 2012;490:49-54.
-
(2012)
Nature
, vol.490
, pp. 49-54
-
-
Zhang, G.1
Fang, X.2
Guo, X.3
Li, L.4
Luo, R.5
Xu, F.6
-
36
-
-
33750995860
-
The genome of the sea urchin Strongylocentrotus purpuratus
-
Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science. 2006;314:941-52.
-
(2006)
Science
, vol.314
, pp. 941-952
-
-
Sodergren, E.1
Weinstock, G.M.2
Davidson, E.H.3
Cameron, R.A.4
Gibbs, R.A.5
Angerer, R.C.6
-
37
-
-
84915782952
-
The Anadara trapezia transcriptome: A resource for molluscan physiological genomics
-
Prentis PJ, Pavasovic A. The Anadara trapezia transcriptome: A resource for molluscan physiological genomics. Marine Genomics. 2014;18(Part B):113-5.
-
(2014)
Marine Genomics
, vol.18
, Issue.PART. B
, pp. 113-115
-
-
Prentis, P.J.1
Pavasovic, A.2
-
38
-
-
63649108380
-
The roles of TLRs, RLRs and NLRs in pathogen recognition
-
Kawai T, Akira S. The roles of TLRs, RLRs and NLRs in pathogen recognition. Int Immunol. 2009;21:317-37.
-
(2009)
Int Immunol
, vol.21
, pp. 317-337
-
-
Kawai, T.1
Akira, S.2
-
39
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotech. 2011;29:644-52.
-
(2011)
Nat Biotech
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
-
40
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114-20.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
41
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22:1658-9.
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
42
-
-
84870431038
-
CD-HIT: accelerated for clustering the next-generation sequencing data
-
Fu L, Niu B, Zhu Z, Wu S, Li W. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics. 2012;28:3150-2.
-
(2012)
Bioinformatics
, vol.28
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
43
-
-
34249848751
-
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra G, Bradnam K, Korf I. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics. 2007;23:1061-7.
-
(2007)
Bioinformatics
, vol.23
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
44
-
-
84995780445
-
-
[cited Jun 19], Accessed 28 Mar 2016
-
Trinotate functional annotation [Internet]. [cited 2015 Jun 19]. Available from: http://trinotate.github.io/. Accessed 28 Mar 2016.
-
(2015)
-
-
-
45
-
-
84946069451
-
UniProt: a hub for protein information
-
Consortium TU. UniProt: a hub for protein information. Nucl Acids Res. 2015;43:D204-12.
-
(2015)
Nucl Acids Res
, vol.43
, pp. D204-D212
-
-
Consortium, T.U.1
-
46
-
-
84925267288
-
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
-
Suzek BE, Wang Y, Huang H, McGarvey PB, Wu CH, Consortium the U. UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. Bioinformatics. 2015;31:926-32.
-
(2015)
Bioinformatics
, vol.31
, pp. 926-932
-
-
Suzek, B.E.1
Wang, Y.2
Huang, H.3
McGarvey, P.B.4
Wu, C.H.5
-
47
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215:403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
48
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, et al. BLAST+: architecture and applications. BMC Bioinformatics. 2009;10:421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
-
49
-
-
84995759123
-
-
Accessed 28 Mar
-
TransDecoder [Internet]. Available from: http://transdecoder.github.io/. Accessed 28 Mar 2016.
-
(2016)
-
-
-
50
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
-
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, et al. De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity. Nat Protoc. 2013;8. Available from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3875132/.
-
(2013)
Nat Protoc
, pp. 8
-
-
Haas, B.J.1
Papanicolaou, A.2
Yassour, M.3
Grabherr, M.4
Blood, P.D.5
Bowden, J.6
-
51
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Meth. 2011;8:785-6.
-
(2011)
Nat Meth
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Heijne, G.3
Nielsen, H.4
-
52
-
-
33747846582
-
WEGO: a web tool for plotting GO annotations
-
Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 2006;34:W293-7.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W293-W297
-
-
Ye, J.1
Fang, L.2
Zheng, H.3
Zhang, Y.4
Chen, J.5
Zhang, Z.6
-
53
-
-
67650721347
-
CateGOrizer: A Web-Based Program to Batch Analyze Gene Ontology Classification Categories
-
Hu Z-L, Bao J, Reecy JM. CateGOrizer: A Web-Based Program to Batch Analyze Gene Ontology Classification Categories. OJB. 2008;9:108-12.
-
(2008)
OJB
, vol.9
, pp. 108-112
-
-
Hu, Z.-L.1
Bao, J.2
Reecy, J.M.3
-
54
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Meth. 2012;9:357-9.
-
(2012)
Nat Meth
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
55
-
-
79961123152
-
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 2011;12:323.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
56
-
-
33846058302
-
Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis
-
Sullivan JC, Kalaitzidis D, Gilmore TD, Finnerty JR. Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis. Dev Genes Evol. 2006;217:63-72.
-
(2006)
Dev Genes Evol
, vol.217
, pp. 63-72
-
-
Sullivan, J.C.1
Kalaitzidis, D.2
Gilmore, T.D.3
Finnerty, J.R.4
-
57
-
-
0034899781
-
Evaluation of methods for the prediction of membrane spanning regions
-
Möller S, Croning MD, Apweiler R. Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics. 2001;17:646-53.
-
(2001)
Bioinformatics
, vol.17
, pp. 646-653
-
-
Möller, S.1
Croning, M.D.2
Apweiler, R.3
-
58
-
-
34247566510
-
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling
-
O'Neill LAJ, Bowie AG. The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling. Nat Rev Immunol. 2007;7:353-64.
-
(2007)
Nat Rev Immunol
, vol.7
, pp. 353-364
-
-
O'Neill, L.A.J.1
Bowie, A.G.2
-
59
-
-
84862245279
-
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction
-
Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics. 2012;13:134.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 134
-
-
Ye, J.1
Coulouris, G.2
Zaretskaya, I.3
Cutcutache, I.4
Rozen, S.5
Madden, T.L.6
-
60
-
-
78649574483
-
Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant
-
Prentis PJ, Woolfit M, Thomas-Hall SR, Ortiz-Barrientos D, Pavasovic A, Lowe AJ, et al. Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant. Ann Bot. 2010;106:1009-17.
-
(2010)
Ann Bot
, vol.106
, pp. 1009-1017
-
-
Prentis, P.J.1
Woolfit, M.2
Thomas-Hall, S.R.3
Ortiz-Barrientos, D.4
Pavasovic, A.5
Lowe, A.J.6
-
61
-
-
84863507534
-
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, et al. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28:1647-9.
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
Sturrock, S.6
-
62
-
-
84943340011
-
Comparative Analysis and Distribution of Omega-3 lcPUFA Biosynthesis Genes in Marine Molluscs
-
Surm JM, Prentis PJ, Pavasovic A. Comparative Analysis and Distribution of Omega-3 lcPUFA Biosynthesis Genes in Marine Molluscs. PLoS One. 2015;10:e0136301.
-
(2015)
PLoS One
, vol.10
-
-
Surm, J.M.1
Prentis, P.J.2
Pavasovic, A.3
-
63
-
-
85022158148
-
MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets
-
Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870-4. doi: 10.1093/molbev/msw054.
-
(2016)
Mol Biol Evol
, vol.33
, Issue.7
, pp. 1870-1874
-
-
Kumar, S.1
Stecher, G.2
Tamura, K.3
-
64
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res. 2004;32:1792-7.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
65
-
-
84890381233
-
pamlX: a graphical user interface for PAML
-
Xu B, Yang Z. pamlX: a graphical user interface for PAML. Mol Biol Evol. 2013;30:2723-4.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2723-2724
-
-
Xu, B.1
Yang, Z.2
-
66
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 2007;24:1586-91.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
67
-
-
84899553363
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312-3.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
68
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000;17:540-52.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
69
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP. SMART, a simple modular architecture research tool: Identification of signaling domains. Proc Natl Acad Sci U S A. 1998;95:5857-64.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
70
-
-
84946060416
-
SMART: recent updates, new developments and status in 2015
-
Letunic I, Doerks T, Bork P. SMART: recent updates, new developments and status in 2015. Nucl Acids Res. 2015;43:D257-60.
-
(2015)
Nucl Acids Res
, vol.43
, pp. D257-D260
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
71
-
-
70350241235
-
Two alleles of NF-ΚB in the Sea Anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities
-
Sullivan JC, Wolenski FS, Reitzel AM, French CE, Traylor-Knowles N, Gilmore TD, et al. Two alleles of NF-ΚB in the Sea Anemone Nematostella vectensis are widely dispersed in nature and encode proteins with distinct activities. PLoS One. 2009;4. Available from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2751831/.
-
(2009)
PLoS One
, pp. 4
-
-
Sullivan, J.C.1
Wolenski, F.S.2
Reitzel, A.M.3
French, C.E.4
Traylor-Knowles, N.5
Gilmore, T.D.6
|