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Volumn 31, Issue 1, 2014, Pages 106-120

The characterization of sponge nlrs provides insight into the origin and evolution of this innate immune gene family in animals

Author keywords

innate immunity; invertebrate genomics; NACHT domain; Porifera

Indexed keywords

NUCLEOTIDEBINDING DOMAIN AND LEUCINE RICH REPEAT PROTEIN; PATTERN RECOGNITION RECEPTOR; UNCLASSIFIED DRUG;

EID: 84891816495     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst174     Document Type: Article
Times cited : (78)

References (59)
  • 1
    • 84881542521 scopus 로고    scopus 로고
    • Inflammasomemediated pyroptotic and apoptotic cell death, and defense against infection
    • Aachoui Y, Sagulenko V, Miao EA, Stacey KJ. 2013. Inflammasomemediated pyroptotic and apoptotic cell death, and defense against infection. Curr Opin Microbiol. 16:319-326.
    • (2013) Curr Opin Microbiol. , vol.16 , pp. 319-326
    • Aachoui, Y.1    Sagulenko, V.2    Miao, E.A.3    Stacey, K.J.4
  • 2
    • 0033920569 scopus 로고    scopus 로고
    • Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
    • Adachi J, Waddell PJ, Martin W, Hasegawa M. 2000. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J Mol Evol. 50:348-358.
    • (2000) J Mol Evol. , vol.50 , pp. 348-358
    • Adachi, J.1    Waddell, P.J.2    Martin, W.3    Hasegawa, M.4
  • 3
    • 66249135697 scopus 로고    scopus 로고
    • A renaissance of elicitors: Perception of microbeassociated molecular patterns and danger signals by patternrecognition receptors
    • Boller T, Felix G. 2009. A renaissance of elicitors: Perception of microbeassociated molecular patterns and danger signals by patternrecognition receptors. Annu Rev Plant Biol. 60:379-406.
    • (2009) Annu Rev Plant Biol. , vol.60 , pp. 379-406
    • Boller, T.1    Felix, G.2
  • 4
    • 84857062410 scopus 로고    scopus 로고
    • A new eye on NLR proteins: Focused on clarity or diffused by complexity?
    • Bonardi V, Cherkis K, Nishimura MT, Dangl JL. 2012. A new eye on NLR proteins: Focused on clarity or diffused by complexity?. Curr Opin Immunol. 24:41-50.
    • (2012) Curr Opin Immunol. , vol.24 , pp. 41-50
    • Bonardi, V.1    Cherkis, K.2    Nishimura, M.T.3    Dangl, J.L.4
  • 5
    • 84874023911 scopus 로고    scopus 로고
    • Dynamic evolution of toll-like receptor multigene families in echinoderms
    • Buckley KM, Rast JP. 2012. Dynamic evolution of toll-like receptor multigene families in echinoderms. Front Immunol. 3:136.
    • (2012) Front Immunol. , vol.3 , pp. 136
    • Buckley, K.M.1    Rast, J.P.2
  • 6
    • 84879184506 scopus 로고    scopus 로고
    • Roles of NLRP10 in innate and adaptive immunity
    • Damm A, Lautz K, Kufer TA. 2013. Roles of NLRP10 in innate and adaptive immunity. Microb Infect. 15:516-523.
    • (2013) Microb Infect. , vol.15 , pp. 516-523
    • Damm, A.1    Lautz, K.2    Kufer, T.A.3
  • 7
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: Fast selection of best-fit models of protein evolution
    • Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: Fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165.
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 8
    • 79953046719 scopus 로고    scopus 로고
    • The inflammasome NLRs in immunity, inflammation, and associated diseases
    • Davis BK, Wen H, Ting JPY. 2011. The inflammasome NLRs in immunity, inflammation, and associated diseases. Annu Rev Immunol. 29: 707-735.
    • (2011) Annu Rev Immunol. , vol.29 , pp. 707-735
    • Davis, B.K.1    Wen, H.2    Ting, J.P.Y.3
  • 9
    • 79953203626 scopus 로고    scopus 로고
    • Inflammasome activation: From inflammatory disease to infection
    • Dunne A. 2011. Inflammasome activation: From inflammatory disease to infection. Biochem Soc Trans. 39:669-673.
    • (2011) Biochem Soc Trans. , vol.39 , pp. 669-673
    • Dunne, A.1
  • 10
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn RD, Clements J, Eddy SR. 2011. HMMER web server: Interactive sequence similarity searching. Nucleic Acids Res. 39:W29-W37.
    • (2011) Nucleic Acids Res. , vol.39
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 11
    • 60749104683 scopus 로고    scopus 로고
    • The inflammasome: A caspase-1-Activation platform that regulates immune responses and disease pathogenesis
    • Franchi L, Eigenbrod T, Muñoz-Planillo R, Nuñez G. 2009. The inflammasome: A caspase-1-Activation platform that regulates immune responses and disease pathogenesis. Nat Immunol. 10:241-247.
    • (2009) Nat Immunol. , vol.10 , pp. 241-247
    • Franchi, L.1    Eigenbrod, T.2    Muñoz-Planillo, R.3    Nuñez, G.4
  • 12
    • 17544367678 scopus 로고    scopus 로고
    • Convergent evolution of domain architectures (is rare)
    • Gough J. 2005. Convergent evolution of domain architectures (is rare). Bioinformatics 21:1464-1471.
    • (2005) Bioinformatics , vol.21 , pp. 1464-1471
    • Gough, J.1
  • 13
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol. 59:307-321.
    • (2010) Syst Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 14
    • 84871832159 scopus 로고    scopus 로고
    • The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations
    • Hamada M, Shoguchi E, Shinzato C, Kawashima T, Miller DJ, Satoh N. 2012. The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Mol Biol Evol. 30:167-176.
    • (2012) Mol Biol Evol. , vol.30 , pp. 167-176
    • Hamada, M.1    Shoguchi, E.2    Shinzato, C.3    Kawashima, T.4    Miller, D.J.5    Satoh, N.6
  • 15
    • 79958205445 scopus 로고    scopus 로고
    • Sensing disease and danger: A survey of vertebrate PRRs and their origins
    • Hansen JD, Vojtech LN, Laing KJ. 2011. Sensing disease and danger: A survey of vertebrate PRRs and their origins. Dev Comp Immunol. 35: 886-897.
    • (2011) Dev Comp Immunol. , vol.35 , pp. 886-897
    • Hansen, J.D.1    Vojtech, L.N.2    Laing, K.J.3
  • 16
    • 33751549306 scopus 로고    scopus 로고
    • The immune gene repertoire encoded in the purple sea urchin genome
    • 16 Co-Authors).
    • Hibino T, Loza-Coll M, Messier C, et al.. (16 co-Authors). 2006. The immune gene repertoire encoded in the purple sea urchin genome. Dev Biol. 300:349-365.
    • (2006) Dev Biol. , vol.300 , pp. 349-365
    • Hibino, T.1    Loza-Coll, M.2    Messier, C.3
  • 18
    • 46449138598 scopus 로고    scopus 로고
    • Genomic analysis of the immune gene repertoire of Amphioxus reveals extraordinary innate complexity and diversity
    • 17 Co-Authors).
    • Huang S, Liu H, Ge J, et al.. (17 co-Authors). 2008. Genomic analysis of the immune gene repertoire of Amphioxus reveals extraordinary innate complexity and diversity. Genome Res. 18:1112-1126.
    • (2008) Genome Res. , vol.18 , pp. 1112-1126
    • Huang, S.1    Liu, H.2    Ge, J.3
  • 19
    • 70349880423 scopus 로고    scopus 로고
    • Understanding diversity of human innate immunity receptors: Analysis of surface features of leucine-rich repeat domains in NLRs and TLRs
    • Istomin AY, Godzik A. 2009. Understanding diversity of human innate immunity receptors: Analysis of surface features of leucine-rich repeat domains in NLRs and TLRs. BMC Immunol. 10:48.
    • (2009) BMC Immunol. , vol.10 , pp. 48
    • Istomin, A.Y.1    Godzik, A.2
  • 21
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 8:275-282.
    • (1992) Comput Appl Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 24
    • 0036316720 scopus 로고    scopus 로고
    • Origin and evolution of eukaryotic apoptosis: The bacterial connection
    • Koonin EV, Aravind L. 2002. Origin and evolution of eukaryotic apoptosis: The bacterial connection. Cell Death Differ. 9:394-404.
    • (2002) Cell Death Differ. , vol.9 , pp. 394-404
    • Koonin, E.V.1    Aravind, L.2
  • 25
    • 42149148610 scopus 로고    scopus 로고
    • Signal transduction pathways used by NLR-Type innate immune receptors
    • Kufer TA. 2008. Signal transduction pathways used by NLR-Type innate immune receptors. Mol Biosyst. 4:380-386.
    • (2008) Mol Biosyst. , vol.4 , pp. 380-386
    • Kufer, T.A.1
  • 26
    • 78751620798 scopus 로고    scopus 로고
    • NLR functions beyond pathogen recognition
    • Kufer TA, Sansonetti PJ. 2011. NLR functions beyond pathogen recognition. Nat Immunol. 12:121-128.
    • (2011) Nat Immunol. , vol.12 , pp. 121-128
    • Kufer, T.A.1    Sansonetti, P.J.2
  • 27
    • 33749356828 scopus 로고    scopus 로고
    • Alternative adaptive immunity in invertebrates
    • Kurtz J, Armitage SAO. 2006. Alternative adaptive immunity in invertebrates. Trends Immunol. 27:493-496.
    • (2006) Trends Immunol. , vol.27 , pp. 493-496
    • Kurtz, J.1    Armitage, S.A.O.2
  • 28
    • 40949159815 scopus 로고    scopus 로고
    • A genomic view of the NOD-like receptor family in teleost fish: Identification of a novel NLR subfamily in zebrafish
    • Laing KJ, Purcell MK,Winton JR, Hansen JD. 2008. A genomic view of the NOD-like receptor family in teleost fish: Identification of a novel NLR subfamily in zebrafish. BMC Evol Biol. 8:42.
    • (2008) BMC Evol Biol. , vol.8 , pp. 42
    • Laing, K.J.1    Purcell, M.K.2    Winton, J.R.3    Hansen, J.D.4
  • 30
    • 4644247731 scopus 로고    scopus 로고
    • STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer
    • Leipe DD, Koonin EV, Aravind L. 2004. STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer. J Mol Biol. 343:1-28.
    • (2004) J Mol Biol. , vol.343 , pp. 1-28
    • Leipe, D.D.1    Koonin, E.V.2    Aravind, L.3
  • 31
    • 80051967147 scopus 로고    scopus 로고
    • NLR functions in plant and animal immune systems: So far and yet so close
    • Maekawa T, Kufer TA, Schulze-Lefert P. 2011. NLR functions in plant and animal immune systems: So far and yet so close. Nat Immunol. 12: 817-826.
    • (2011) Nat Immunol. , vol.12 , pp. 817-826
    • Maekawa, T.1    Kufer, T.A.2    Schulze-Lefert, P.3
  • 32
    • 0036671894 scopus 로고    scopus 로고
    • The inflammasome: A molecular platform triggering activation of inflammatory caspases and processing of proIL-beta
    • Martinon F, Burns K, Tschopp J. 2002. The inflammasome: A molecular platform triggering activation of inflammatory caspases and processing of proIL-beta. Mol Cell. 10:417-426.
    • (2002) Mol Cell. , vol.10 , pp. 417-426
    • Martinon, F.1    Burns, K.2    Tschopp, J.3
  • 34
    • 84874479799 scopus 로고    scopus 로고
    • Animals in a bacterial world, a new imperative for the life sciences
    • 26 Co-Authors).
    • McFall-Ngai M, Gilbert SF, Hentschel U, et al.. (26 co-Authors). 2013. Animals in a bacterial world, a new imperative for the life sciences. Proc Natl Acad Sci U S A. 110:3229-3226.
    • (2013) Proc Natl Acad Sci U S A. , vol.110 , pp. 3229-3226
    • McFall-Ngai, M.1    Gilbert, S.F.2    Hentschel, U.3
  • 35
    • 77949273867 scopus 로고    scopus 로고
    • Highly diversified innate receptor systems and new forms of animal immunity
    • Messier-Solek C, Buckley KM, Rast JP. 2010. Highly diversified innate receptor systems and new forms of animal immunity. Semin Immunol. 22:39-47.
    • (2010) Semin Immunol. , vol.22 , pp. 39-47
    • Messier-Solek, C.1    Buckley, K.M.2    Rast, J.P.3
  • 37
    • 65249099546 scopus 로고    scopus 로고
    • Phylogenomics revives traditional views on deep animal relationships
    • 20 Co-Authors).
    • Philippe H, Derelle R, Lopez P, et al.. (20 co-Authors). 2009. Phylogenomics revives traditional views on deep animal relationships. Curr Biol. 19:706-712.
    • (2009) Curr Biol. , vol.19 , pp. 706-712
    • Philippe, H.1    Derelle, R.2    Lopez, P.3
  • 39
    • 84871635651 scopus 로고    scopus 로고
    • Nod-like receptors in intestinal host defense: Controlling pathogens, the microbiota, or both?
    • Robertson SJ, Girardin SE. 2013. Nod-like receptors in intestinal host defense: Controlling pathogens, the microbiota, or both?. Curr Opin Gastroenterol. 29:15-22.
    • (2013) Curr Opin Gastroenterol. , vol.29 , pp. 15-22
    • Robertson, S.J.1    Girardin, S.E.2
  • 40
    • 84857041389 scopus 로고    scopus 로고
    • Examining hostmicrobial interactions through the lens of NOD: From plants to mammals
    • Robertson SJ, Rubino SJ, Geddes K, Philpott DJ. 2012. Examining hostmicrobial interactions through the lens of NOD: From plants to mammals. Semin Immunol. 24:9-16.
    • (2012) Semin Immunol. , vol.24 , pp. 9-16
    • Robertson, S.J.1    Rubino, S.J.2    Geddes, K.3    Philpott, D.J.4
  • 41
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
    • 10 Co-Authors).
    • Ronquist F, Huelsenbeck JP, Teslenko M, et al.. (10 co-Authors). 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539-542.
    • (2012) Syst Biol. , vol.61 , pp. 539-542
    • Ronquist, F.1    Huelsenbeck, J.P.2    Teslenko, M.3
  • 42
    • 69949084523 scopus 로고    scopus 로고
    • Evolution and function of innate immune receptors-insights from marine invertebrates
    • Rosenstiel P, Philipp EER, Schreiber S, Bosch TCG. 2009. Evolution and function of innate immune receptors-insights from marine invertebrates. J Innate Immun. 1:291-300.
    • (2009) J Innate Immun. , vol.1 , pp. 291-300
    • Rosenstiel, P.1    Philipp, E.E.R.2    Schreiber, S.3    Bosch, T.C.G.4
  • 43
    • 33846319348 scopus 로고    scopus 로고
    • The innate signaling of dangers and the dangers of innate signaling
    • Sansonetti PJ. 2006. The innate signaling of dangers and the dangers of innate signaling. Nat Immunol. 7:1237-1242.
    • (2006) Nat Immunol. , vol.7 , pp. 1237-1242
    • Sansonetti, P.J.1
  • 44
    • 4043065142 scopus 로고    scopus 로고
    • The scavenger receptor cysteine-rich (SRCR) domain: An ancient and highly conserved protein module of the innate immune system
    • Sarrias MR, Gronlund J, Padilla O, Madsen J, Holmskov U, Lozano F. 2004. The scavenger receptor cysteine-rich (SRCR) domain: An ancient and highly conserved protein module of the innate immune system. Crit Rev Immunol. 24:1-37.
    • (2004) Crit Rev Immunol. , vol.24 , pp. 1-37
    • Sarrias, M.R.1    Gronlund, J.2    Padilla, O.3    Madsen, J.4    Holmskov, U.5    Lozano, F.6
  • 45
    • 77950362382 scopus 로고    scopus 로고
    • The inflammasomes
    • Schroder K, Tschopp J. 2010. The inflammasomes. Cell 140:821-832.
    • (2010) Cell , vol.140 , pp. 821-832
    • Schroder, K.1    Tschopp, J.2
  • 46
    • 34247622897 scopus 로고    scopus 로고
    • How do invertebrates generate a highly specific innate immune response?
    • Schulenburg H, Boehnisch C, Michiels NK. 2007. How do invertebrates generate a highly specific innate immune response?. Mol Immunol. 44:3338-3344.
    • (2007) Mol Immunol. , vol.44 , pp. 3338-3344
    • Schulenburg, H.1    Boehnisch, C.2    Michiels, N.K.3
  • 47
    • 77749285687 scopus 로고    scopus 로고
    • NOD-like receptor (NLR) signaling beyond the inflammasome
    • Shaw PJ, Lamkanfi M, Kanneganti T-D. 2010. NOD-like receptor (NLR) signaling beyond the inflammasome. Eur J Immunol. 40: 624-627.
    • (2010) Eur J Immunol. , vol.40 , pp. 624-627
    • Shaw, P.J.1    Lamkanfi, M.2    Kanneganti, T.-D.3
  • 48
    • 77955490196 scopus 로고    scopus 로고
    • The Amphimedon queenslandica genome and the evolution of animal complexity
    • 33 Co-Authors).
    • Srivastava M, Simakov O, Chapman J, et al.. (33 co-Authors). 2010. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466:720-726.
    • (2010) Nature , vol.466 , pp. 720-726
    • Srivastava, M.1    Simakov, O.2    Chapman, J.3
  • 49
    • 84875422919 scopus 로고    scopus 로고
    • Effector-Triggered versus patterntriggered immunity: How animals sense pathogens
    • Stuart LM, Paquette N, Boyer L. 2013. Effector-Triggered versus patterntriggered immunity: How animals sense pathogens. Nat Rev Immunol. 13:199-206.
    • (2013) Nat Rev Immunol. , vol.13 , pp. 199-206
    • Stuart, L.M.1    Paquette, N.2    Boyer, L.3
  • 50
    • 74549206702 scopus 로고    scopus 로고
    • How the noninflammasome NLRs function in the innate immune system
    • Ting JPY, Duncan JA, Lei Y. 2010. How the noninflammasome NLRs function in the innate immune system. Science 327:286-290.
    • (2010) Science , vol.327 , pp. 286-290
    • Ting, J.P.Y.1    Duncan, J.A.2    Lei, Y.3
  • 51
    • 40449140937 scopus 로고    scopus 로고
    • The NLR gene family: A standard nomenclature
    • 24 Co-Authors).
    • Ting JPY, Harton JA, Hoffman HM, et al.. (24 co-Authors). 2008. The NLR gene family: A standard nomenclature. Immunity 28:285-287.
    • (2008) Immunity , vol.28 , pp. 285-287
    • Ting, J.P.Y.1    Harton, J.A.2    Hoffman, H.M.3
  • 54
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 18:691-699.
    • (2001) Mol Biol Evol. , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 55
    • 38149113537 scopus 로고    scopus 로고
    • NLR proteins: Integral members of innate immunity and mediators of inflammatory diseases
    • Wilmanski JM, Petnicki-Ocwieja T, Kobayashi KS. 2008. NLR proteins: Integral members of innate immunity and mediators of inflammatory diseases. J Leukoc Biol. 83:13-30.
    • (2008) J Leukoc Biol. , vol.83 , pp. 13-30
    • Wilmanski, J.M.1    Petnicki-Ocwieja, T.2    Kobayashi, K.S.3
  • 56
    • 58049217490 scopus 로고    scopus 로고
    • RNA recognition and signal transduction by RIG-I-like receptors
    • Yoneyama M, Fujita T. 2009. RNA recognition and signal transduction by RIG-I-like receptors. Immunol Rev. 227:54-65.
    • (2009) Immunol Rev. , vol.227 , pp. 54-65
    • Yoneyama, M.1    Fujita, T.2
  • 57
    • 84856540295 scopus 로고    scopus 로고
    • Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes
    • Yue J-X, Meyers BC, Chen J-Q, Tian D, Yang S. 2012. Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. New phytol. 193: 1049-1063.
    • (2012) New phytol. , vol.193 , pp. 1049-1063
    • Yue, J.-X.1    Meyers, B.C.2    Chen, J.-Q.3    Tian, D.4    Yang, S.5
  • 58
    • 77951251364 scopus 로고    scopus 로고
    • Domain architecture evolution of pattern-recognition receptors
    • Zhang Q, Zmasek CM, Godzik A. 2010. Domain architecture evolution of pattern-recognition receptors. Immunogenetics 62:263-272.
    • (2010) Immunogenetics , vol.62 , pp. 263-272
    • Zhang, Q.1    Zmasek, C.M.2    Godzik, A.3


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