-
1
-
-
84881542521
-
Inflammasomemediated pyroptotic and apoptotic cell death, and defense against infection
-
Aachoui Y, Sagulenko V, Miao EA, Stacey KJ. 2013. Inflammasomemediated pyroptotic and apoptotic cell death, and defense against infection. Curr Opin Microbiol. 16:319-326.
-
(2013)
Curr Opin Microbiol.
, vol.16
, pp. 319-326
-
-
Aachoui, Y.1
Sagulenko, V.2
Miao, E.A.3
Stacey, K.J.4
-
2
-
-
0033920569
-
Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
-
Adachi J, Waddell PJ, Martin W, Hasegawa M. 2000. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J Mol Evol. 50:348-358.
-
(2000)
J Mol Evol.
, vol.50
, pp. 348-358
-
-
Adachi, J.1
Waddell, P.J.2
Martin, W.3
Hasegawa, M.4
-
3
-
-
66249135697
-
A renaissance of elicitors: Perception of microbeassociated molecular patterns and danger signals by patternrecognition receptors
-
Boller T, Felix G. 2009. A renaissance of elicitors: Perception of microbeassociated molecular patterns and danger signals by patternrecognition receptors. Annu Rev Plant Biol. 60:379-406.
-
(2009)
Annu Rev Plant Biol.
, vol.60
, pp. 379-406
-
-
Boller, T.1
Felix, G.2
-
5
-
-
84874023911
-
Dynamic evolution of toll-like receptor multigene families in echinoderms
-
Buckley KM, Rast JP. 2012. Dynamic evolution of toll-like receptor multigene families in echinoderms. Front Immunol. 3:136.
-
(2012)
Front Immunol.
, vol.3
, pp. 136
-
-
Buckley, K.M.1
Rast, J.P.2
-
6
-
-
84879184506
-
Roles of NLRP10 in innate and adaptive immunity
-
Damm A, Lautz K, Kufer TA. 2013. Roles of NLRP10 in innate and adaptive immunity. Microb Infect. 15:516-523.
-
(2013)
Microb Infect.
, vol.15
, pp. 516-523
-
-
Damm, A.1
Lautz, K.2
Kufer, T.A.3
-
7
-
-
79954529507
-
ProtTest 3: Fast selection of best-fit models of protein evolution
-
Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: Fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
8
-
-
79953046719
-
The inflammasome NLRs in immunity, inflammation, and associated diseases
-
Davis BK, Wen H, Ting JPY. 2011. The inflammasome NLRs in immunity, inflammation, and associated diseases. Annu Rev Immunol. 29: 707-735.
-
(2011)
Annu Rev Immunol.
, vol.29
, pp. 707-735
-
-
Davis, B.K.1
Wen, H.2
Ting, J.P.Y.3
-
9
-
-
79953203626
-
Inflammasome activation: From inflammatory disease to infection
-
Dunne A. 2011. Inflammasome activation: From inflammatory disease to infection. Biochem Soc Trans. 39:669-673.
-
(2011)
Biochem Soc Trans.
, vol.39
, pp. 669-673
-
-
Dunne, A.1
-
10
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR. 2011. HMMER web server: Interactive sequence similarity searching. Nucleic Acids Res. 39:W29-W37.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
11
-
-
60749104683
-
The inflammasome: A caspase-1-Activation platform that regulates immune responses and disease pathogenesis
-
Franchi L, Eigenbrod T, Muñoz-Planillo R, Nuñez G. 2009. The inflammasome: A caspase-1-Activation platform that regulates immune responses and disease pathogenesis. Nat Immunol. 10:241-247.
-
(2009)
Nat Immunol.
, vol.10
, pp. 241-247
-
-
Franchi, L.1
Eigenbrod, T.2
Muñoz-Planillo, R.3
Nuñez, G.4
-
12
-
-
17544367678
-
Convergent evolution of domain architectures (is rare)
-
Gough J. 2005. Convergent evolution of domain architectures (is rare). Bioinformatics 21:1464-1471.
-
(2005)
Bioinformatics
, vol.21
, pp. 1464-1471
-
-
Gough, J.1
-
13
-
-
77950806408
-
New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol. 59:307-321.
-
(2010)
Syst Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
14
-
-
84871832159
-
The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations
-
Hamada M, Shoguchi E, Shinzato C, Kawashima T, Miller DJ, Satoh N. 2012. The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Mol Biol Evol. 30:167-176.
-
(2012)
Mol Biol Evol.
, vol.30
, pp. 167-176
-
-
Hamada, M.1
Shoguchi, E.2
Shinzato, C.3
Kawashima, T.4
Miller, D.J.5
Satoh, N.6
-
15
-
-
79958205445
-
Sensing disease and danger: A survey of vertebrate PRRs and their origins
-
Hansen JD, Vojtech LN, Laing KJ. 2011. Sensing disease and danger: A survey of vertebrate PRRs and their origins. Dev Comp Immunol. 35: 886-897.
-
(2011)
Dev Comp Immunol.
, vol.35
, pp. 886-897
-
-
Hansen, J.D.1
Vojtech, L.N.2
Laing, K.J.3
-
16
-
-
33751549306
-
The immune gene repertoire encoded in the purple sea urchin genome
-
16 Co-Authors).
-
Hibino T, Loza-Coll M, Messier C, et al.. (16 co-Authors). 2006. The immune gene repertoire encoded in the purple sea urchin genome. Dev Biol. 300:349-365.
-
(2006)
Dev Biol.
, vol.300
, pp. 349-365
-
-
Hibino, T.1
Loza-Coll, M.2
Messier, C.3
-
18
-
-
46449138598
-
Genomic analysis of the immune gene repertoire of Amphioxus reveals extraordinary innate complexity and diversity
-
17 Co-Authors).
-
Huang S, Liu H, Ge J, et al.. (17 co-Authors). 2008. Genomic analysis of the immune gene repertoire of Amphioxus reveals extraordinary innate complexity and diversity. Genome Res. 18:1112-1126.
-
(2008)
Genome Res.
, vol.18
, pp. 1112-1126
-
-
Huang, S.1
Liu, H.2
Ge, J.3
-
19
-
-
70349880423
-
Understanding diversity of human innate immunity receptors: Analysis of surface features of leucine-rich repeat domains in NLRs and TLRs
-
Istomin AY, Godzik A. 2009. Understanding diversity of human innate immunity receptors: Analysis of surface features of leucine-rich repeat domains in NLRs and TLRs. BMC Immunol. 10:48.
-
(2009)
BMC Immunol.
, vol.10
, pp. 48
-
-
Istomin, A.Y.1
Godzik, A.2
-
21
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 8:275-282.
-
(1992)
Comput Appl Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
24
-
-
0036316720
-
Origin and evolution of eukaryotic apoptosis: The bacterial connection
-
Koonin EV, Aravind L. 2002. Origin and evolution of eukaryotic apoptosis: The bacterial connection. Cell Death Differ. 9:394-404.
-
(2002)
Cell Death Differ.
, vol.9
, pp. 394-404
-
-
Koonin, E.V.1
Aravind, L.2
-
25
-
-
42149148610
-
Signal transduction pathways used by NLR-Type innate immune receptors
-
Kufer TA. 2008. Signal transduction pathways used by NLR-Type innate immune receptors. Mol Biosyst. 4:380-386.
-
(2008)
Mol Biosyst.
, vol.4
, pp. 380-386
-
-
Kufer, T.A.1
-
26
-
-
78751620798
-
NLR functions beyond pathogen recognition
-
Kufer TA, Sansonetti PJ. 2011. NLR functions beyond pathogen recognition. Nat Immunol. 12:121-128.
-
(2011)
Nat Immunol.
, vol.12
, pp. 121-128
-
-
Kufer, T.A.1
Sansonetti, P.J.2
-
27
-
-
33749356828
-
Alternative adaptive immunity in invertebrates
-
Kurtz J, Armitage SAO. 2006. Alternative adaptive immunity in invertebrates. Trends Immunol. 27:493-496.
-
(2006)
Trends Immunol.
, vol.27
, pp. 493-496
-
-
Kurtz, J.1
Armitage, S.A.O.2
-
28
-
-
40949159815
-
A genomic view of the NOD-like receptor family in teleost fish: Identification of a novel NLR subfamily in zebrafish
-
Laing KJ, Purcell MK,Winton JR, Hansen JD. 2008. A genomic view of the NOD-like receptor family in teleost fish: Identification of a novel NLR subfamily in zebrafish. BMC Evol Biol. 8:42.
-
(2008)
BMC Evol Biol.
, vol.8
, pp. 42
-
-
Laing, K.J.1
Purcell, M.K.2
Winton, J.R.3
Hansen, J.D.4
-
29
-
-
79955371585
-
Defining the origins of the NOD-like receptor system at the base of animal evolution
-
Lange C, Hemmrich G, Klostermeier UC, Lopez-Quintero JA, Miller DJ, Rahn T, Weiss Y, Bosch TCG, Rosenstiel P. 2011. Defining the origins of the NOD-like receptor system at the base of animal evolution. Mol Biol Evol. 28:1687-1702.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 1687-1702
-
-
Lange, C.1
Hemmrich, G.2
Klostermeier, U.C.3
Lopez-Quintero, J.A.4
Miller, D.J.5
Rahn, T.6
Weiss, Y.7
Bosch, T.C.G.8
Rosenstiel, P.9
-
30
-
-
4644247731
-
STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer
-
Leipe DD, Koonin EV, Aravind L. 2004. STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer. J Mol Biol. 343:1-28.
-
(2004)
J Mol Biol.
, vol.343
, pp. 1-28
-
-
Leipe, D.D.1
Koonin, E.V.2
Aravind, L.3
-
31
-
-
80051967147
-
NLR functions in plant and animal immune systems: So far and yet so close
-
Maekawa T, Kufer TA, Schulze-Lefert P. 2011. NLR functions in plant and animal immune systems: So far and yet so close. Nat Immunol. 12: 817-826.
-
(2011)
Nat Immunol.
, vol.12
, pp. 817-826
-
-
Maekawa, T.1
Kufer, T.A.2
Schulze-Lefert, P.3
-
32
-
-
0036671894
-
The inflammasome: A molecular platform triggering activation of inflammatory caspases and processing of proIL-beta
-
Martinon F, Burns K, Tschopp J. 2002. The inflammasome: A molecular platform triggering activation of inflammatory caspases and processing of proIL-beta. Mol Cell. 10:417-426.
-
(2002)
Mol Cell.
, vol.10
, pp. 417-426
-
-
Martinon, F.1
Burns, K.2
Tschopp, J.3
-
34
-
-
84874479799
-
Animals in a bacterial world, a new imperative for the life sciences
-
26 Co-Authors).
-
McFall-Ngai M, Gilbert SF, Hentschel U, et al.. (26 co-Authors). 2013. Animals in a bacterial world, a new imperative for the life sciences. Proc Natl Acad Sci U S A. 110:3229-3226.
-
(2013)
Proc Natl Acad Sci U S A.
, vol.110
, pp. 3229-3226
-
-
McFall-Ngai, M.1
Gilbert, S.F.2
Hentschel, U.3
-
35
-
-
77949273867
-
Highly diversified innate receptor systems and new forms of animal immunity
-
Messier-Solek C, Buckley KM, Rast JP. 2010. Highly diversified innate receptor systems and new forms of animal immunity. Semin Immunol. 22:39-47.
-
(2010)
Semin Immunol.
, vol.22
, pp. 39-47
-
-
Messier-Solek, C.1
Buckley, K.M.2
Rast, J.P.3
-
37
-
-
65249099546
-
Phylogenomics revives traditional views on deep animal relationships
-
20 Co-Authors).
-
Philippe H, Derelle R, Lopez P, et al.. (20 co-Authors). 2009. Phylogenomics revives traditional views on deep animal relationships. Curr Biol. 19:706-712.
-
(2009)
Curr Biol.
, vol.19
, pp. 706-712
-
-
Philippe, H.1
Derelle, R.2
Lopez, P.3
-
38
-
-
44349171085
-
The Nod-like receptor (NLR) family: A tale of similarities and differences
-
Proell M, Riedl SJ, Fritz JH, Rojas AM, Schwarzenbacher R. 2008. The Nod-like receptor (NLR) family: A tale of similarities and differences. PLoS One 3:e2119.
-
(2008)
PLoS One
, vol.3
-
-
Proell, M.1
Riedl, S.J.2
Fritz, J.H.3
Rojas, A.M.4
Schwarzenbacher, R.5
-
39
-
-
84871635651
-
Nod-like receptors in intestinal host defense: Controlling pathogens, the microbiota, or both?
-
Robertson SJ, Girardin SE. 2013. Nod-like receptors in intestinal host defense: Controlling pathogens, the microbiota, or both?. Curr Opin Gastroenterol. 29:15-22.
-
(2013)
Curr Opin Gastroenterol.
, vol.29
, pp. 15-22
-
-
Robertson, S.J.1
Girardin, S.E.2
-
40
-
-
84857041389
-
Examining hostmicrobial interactions through the lens of NOD: From plants to mammals
-
Robertson SJ, Rubino SJ, Geddes K, Philpott DJ. 2012. Examining hostmicrobial interactions through the lens of NOD: From plants to mammals. Semin Immunol. 24:9-16.
-
(2012)
Semin Immunol.
, vol.24
, pp. 9-16
-
-
Robertson, S.J.1
Rubino, S.J.2
Geddes, K.3
Philpott, D.J.4
-
41
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
10 Co-Authors).
-
Ronquist F, Huelsenbeck JP, Teslenko M, et al.. (10 co-Authors). 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539-542.
-
(2012)
Syst Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
Teslenko, M.3
-
42
-
-
69949084523
-
Evolution and function of innate immune receptors-insights from marine invertebrates
-
Rosenstiel P, Philipp EER, Schreiber S, Bosch TCG. 2009. Evolution and function of innate immune receptors-insights from marine invertebrates. J Innate Immun. 1:291-300.
-
(2009)
J Innate Immun.
, vol.1
, pp. 291-300
-
-
Rosenstiel, P.1
Philipp, E.E.R.2
Schreiber, S.3
Bosch, T.C.G.4
-
43
-
-
33846319348
-
The innate signaling of dangers and the dangers of innate signaling
-
Sansonetti PJ. 2006. The innate signaling of dangers and the dangers of innate signaling. Nat Immunol. 7:1237-1242.
-
(2006)
Nat Immunol.
, vol.7
, pp. 1237-1242
-
-
Sansonetti, P.J.1
-
44
-
-
4043065142
-
The scavenger receptor cysteine-rich (SRCR) domain: An ancient and highly conserved protein module of the innate immune system
-
Sarrias MR, Gronlund J, Padilla O, Madsen J, Holmskov U, Lozano F. 2004. The scavenger receptor cysteine-rich (SRCR) domain: An ancient and highly conserved protein module of the innate immune system. Crit Rev Immunol. 24:1-37.
-
(2004)
Crit Rev Immunol.
, vol.24
, pp. 1-37
-
-
Sarrias, M.R.1
Gronlund, J.2
Padilla, O.3
Madsen, J.4
Holmskov, U.5
Lozano, F.6
-
45
-
-
77950362382
-
The inflammasomes
-
Schroder K, Tschopp J. 2010. The inflammasomes. Cell 140:821-832.
-
(2010)
Cell
, vol.140
, pp. 821-832
-
-
Schroder, K.1
Tschopp, J.2
-
46
-
-
34247622897
-
How do invertebrates generate a highly specific innate immune response?
-
Schulenburg H, Boehnisch C, Michiels NK. 2007. How do invertebrates generate a highly specific innate immune response?. Mol Immunol. 44:3338-3344.
-
(2007)
Mol Immunol.
, vol.44
, pp. 3338-3344
-
-
Schulenburg, H.1
Boehnisch, C.2
Michiels, N.K.3
-
47
-
-
77749285687
-
NOD-like receptor (NLR) signaling beyond the inflammasome
-
Shaw PJ, Lamkanfi M, Kanneganti T-D. 2010. NOD-like receptor (NLR) signaling beyond the inflammasome. Eur J Immunol. 40: 624-627.
-
(2010)
Eur J Immunol.
, vol.40
, pp. 624-627
-
-
Shaw, P.J.1
Lamkanfi, M.2
Kanneganti, T.-D.3
-
48
-
-
77955490196
-
The Amphimedon queenslandica genome and the evolution of animal complexity
-
33 Co-Authors).
-
Srivastava M, Simakov O, Chapman J, et al.. (33 co-Authors). 2010. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466:720-726.
-
(2010)
Nature
, vol.466
, pp. 720-726
-
-
Srivastava, M.1
Simakov, O.2
Chapman, J.3
-
49
-
-
84875422919
-
Effector-Triggered versus patterntriggered immunity: How animals sense pathogens
-
Stuart LM, Paquette N, Boyer L. 2013. Effector-Triggered versus patterntriggered immunity: How animals sense pathogens. Nat Rev Immunol. 13:199-206.
-
(2013)
Nat Rev Immunol.
, vol.13
, pp. 199-206
-
-
Stuart, L.M.1
Paquette, N.2
Boyer, L.3
-
50
-
-
74549206702
-
How the noninflammasome NLRs function in the innate immune system
-
Ting JPY, Duncan JA, Lei Y. 2010. How the noninflammasome NLRs function in the innate immune system. Science 327:286-290.
-
(2010)
Science
, vol.327
, pp. 286-290
-
-
Ting, J.P.Y.1
Duncan, J.A.2
Lei, Y.3
-
51
-
-
40449140937
-
The NLR gene family: A standard nomenclature
-
24 Co-Authors).
-
Ting JPY, Harton JA, Hoffman HM, et al.. (24 co-Authors). 2008. The NLR gene family: A standard nomenclature. Immunity 28:285-287.
-
(2008)
Immunity
, vol.28
, pp. 285-287
-
-
Ting, J.P.Y.1
Harton, J.A.2
Hoffman, H.M.3
-
53
-
-
84875542536
-
Recognition of bacteria by inflammasomes
-
von Moltke J, Ayres JS, Kofoed EM, Chavarria-Smith J, Vance RE. 2013. Recognition of bacteria by inflammasomes. Annu Rev Immunol. 31: 73-106.
-
(2013)
Annu Rev Immunol.
, vol.31
, pp. 73-106
-
-
Von Moltke, J.1
Ayres, J.S.2
Kofoed, E.M.3
Chavarria-Smith, J.4
Vance, R.E.5
-
54
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 18:691-699.
-
(2001)
Mol Biol Evol.
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
55
-
-
38149113537
-
NLR proteins: Integral members of innate immunity and mediators of inflammatory diseases
-
Wilmanski JM, Petnicki-Ocwieja T, Kobayashi KS. 2008. NLR proteins: Integral members of innate immunity and mediators of inflammatory diseases. J Leukoc Biol. 83:13-30.
-
(2008)
J Leukoc Biol.
, vol.83
, pp. 13-30
-
-
Wilmanski, J.M.1
Petnicki-Ocwieja, T.2
Kobayashi, K.S.3
-
56
-
-
58049217490
-
RNA recognition and signal transduction by RIG-I-like receptors
-
Yoneyama M, Fujita T. 2009. RNA recognition and signal transduction by RIG-I-like receptors. Immunol Rev. 227:54-65.
-
(2009)
Immunol Rev.
, vol.227
, pp. 54-65
-
-
Yoneyama, M.1
Fujita, T.2
-
57
-
-
84856540295
-
Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes
-
Yue J-X, Meyers BC, Chen J-Q, Tian D, Yang S. 2012. Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. New phytol. 193: 1049-1063.
-
(2012)
New phytol.
, vol.193
, pp. 1049-1063
-
-
Yue, J.-X.1
Meyers, B.C.2
Chen, J.-Q.3
Tian, D.4
Yang, S.5
-
58
-
-
77951251364
-
Domain architecture evolution of pattern-recognition receptors
-
Zhang Q, Zmasek CM, Godzik A. 2010. Domain architecture evolution of pattern-recognition receptors. Immunogenetics 62:263-272.
-
(2010)
Immunogenetics
, vol.62
, pp. 263-272
-
-
Zhang, Q.1
Zmasek, C.M.2
Godzik, A.3
|