-
1
-
-
0022337674
-
An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli
-
Abraham JM, Freitag CS, Clements JR et al. An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli. P Natl Acad Sci USA 1985;82:5724-7.
-
(1985)
P Natl Acad Sci USA
, vol.82
, pp. 5724-5727
-
-
Abraham, J.M.1
Freitag, C.S.2
Clements, J.R.3
-
2
-
-
84857881920
-
The Caulobacter crescentus DNA-(adenine-N6)-methyltransferase CcrM methylates DNA in a distributive manner
-
Albu RF, Jurkowski TP, Jeltsch A. The Caulobacter crescentus DNA-(adenine-N6)-methyltransferase CcrM methylates DNA in a distributive manner. Nucleic Acids Res 2012;40:1708-16.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1708-1716
-
-
Albu, R.F.1
Jurkowski, T.P.2
Jeltsch, A.3
-
3
-
-
84960108609
-
Complete genome sequence of ER2796, a DNA methyltransferase-deficient strain of Escherichia coli K-12
-
Anton BP, Mongodin EF, Agrawal S et al. Complete genome sequence of ER2796, a DNA methyltransferase-deficient strain of Escherichia coli K-12. PLoS One 2015;10:e0127446.
-
(2015)
PLoS One
, vol.10
-
-
Anton, B.P.1
Mongodin, E.F.2
Agrawal, S.3
-
4
-
-
0026637946
-
Initiation of methyl-directed mismatch repair
-
Au KG, Welsh K. Initiation of methyl-directed mismatch repair. J Biol Chem 1992;267:12142-8.
-
(1992)
J Biol Chem
, vol.267
, pp. 12142-12148
-
-
Au, K.G.1
Welsh, K.2
-
5
-
-
0022435178
-
Transcriptional activation of a Pap pilus virulence operon from uropathogenic Escherichia coli
-
Baga M, Göransson M, Normark S et al. Transcriptional activation of a Pap pilus virulence operon from uropathogenic Escherichia coli. EMBO J 1985;4:3887-93.
-
(1985)
EMBO J
, vol.4
, pp. 3887-3893
-
-
Baga, M.1
Göransson, M.2
Normark, S.3
-
6
-
-
33645550078
-
An orphan DNA (cytosine-5-)-methyltransferase in Vibrio cholerae
-
Banerjee S, Chowdhury R. An orphan DNA (cytosine-5-)-methyltransferase in Vibrio cholerae. Microbiology 2006; 152:1055-62.
-
(2006)
Microbiology
, vol.152
, pp. 1055-1062
-
-
Banerjee, S.1
Chowdhury, R.2
-
7
-
-
0036224670
-
Plasticity of a transcriptional regulation network among alpha-proteobacteria is supported by the identification of CtrA targets in Brucella abortus
-
Bellefontaine A, Pierreux CE, Mertens P et al. Plasticity of a transcriptional regulation network among alpha-proteobacteria is supported by the identification of CtrA targets in Brucella abortus. Mol Microbiol 2002;43:945-60.
-
(2002)
Mol Microbiol
, vol.43
, pp. 945-960
-
-
Bellefontaine, A.1
Pierreux, C.E.2
Mertens, P.3
-
9
-
-
0024363761
-
Phase-variation of pyelonephritis-associated pili in Escherichia coli: evidence for transcriptional regulation
-
Blyn LB, Braaten BA, White-Ziegler CA et al. Phase-variation of pyelonephritis-associated pili in Escherichia coli: evidence for transcriptional regulation. EMBO J 1989;8:613-20.
-
(1989)
EMBO J
, vol.8
, pp. 613-620
-
-
Blyn, L.B.1
Braaten, B.A.2
White-Ziegler, C.A.3
-
10
-
-
0030669538
-
DNA sequestration and transcription in the oriC region of Escherichia coli
-
Bogan JA, Helmstetter CE. DNA sequestration and transcription in the oriC region of Escherichia coli. Mol Microbiol 1997;26: 889-96.
-
(1997)
Mol Microbiol
, vol.26
, pp. 889-896
-
-
Bogan, J.A.1
Helmstetter, C.E.2
-
11
-
-
0025081854
-
The role of dam methyltransferase in the control of DNA replication in E. coli
-
Boye E, Løbner-Olesen A. The role of dam methyltransferase in the control of DNA replication in E. coli. Cell 1990;62:981-9.
-
(1990)
Cell
, vol.62
, pp. 981-989
-
-
Boye, E.1
Løbner-Olesen, A.2
-
13
-
-
0034574441
-
Limiting DNA replication to once and only once
-
Boye E, Løbner-Olesen A, Skarstad K. Limiting DNA replication to once and only once. EMBO Rep 2000;1:479-83.
-
(2000)
EMBO Rep
, vol.1
, pp. 479-483
-
-
Boye, E.1
Løbner-Olesen, A.2
Skarstad, K.3
-
14
-
-
0026830902
-
Quantitation of Dam methyltransferase in Escherichia coli
-
Boye E, Marinus MG, Løbner-Olesen A. Quantitation of Dam methyltransferase in Escherichia coli. J Bacteriol 1992;174: 1682-5.
-
(1992)
J Bacteriol
, vol.174
, pp. 1682-1685
-
-
Boye, E.1
Marinus, M.G.2
Løbner-Olesen, A.3
-
15
-
-
0028089165
-
Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E. coli
-
Braaten BA, Nou X, Kaltenbach LS et al. Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E. coli. Cell 1994;76:577-88.
-
(1994)
Cell
, vol.76
, pp. 577-588
-
-
Braaten, B.A.1
Nou, X.2
Kaltenbach, L.S.3
-
16
-
-
0024284091
-
Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome
-
Bramhill D, Kornberg A. Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell 1988;52:743-55.
-
(1988)
Cell
, vol.52
, pp. 743-755
-
-
Bramhill, D.1
Kornberg, A.2
-
17
-
-
33747855297
-
DomainSieve: a protein domain-based screen that led to the identification of damassociated genes with potential link to DNA maintenance
-
Brézellec P, Hoebeke M, Hiet MS et al. DomainSieve: a protein domain-based screen that led to the identification of damassociated genes with potential link to DNA maintenance. Bioinformatics 2006;22:1935-41.
-
(2006)
Bioinformatics
, vol.22
, pp. 1935-1941
-
-
Brézellec, P.1
Hoebeke, M.2
Hiet, M.S.3
-
18
-
-
77951601819
-
The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis
-
Brilli M, Fondi M, Fani R et al. The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis. BMC Syst Biol 2010;4:52.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 52
-
-
Brilli, M.1
Fondi, M.2
Fani, R.3
-
19
-
-
34249785952
-
YhdJ, a nonessential CcrM-like DNA methyltransferase of Escherichia coli and Salmonella enterica
-
Broadbent SE, Balbontin R, Casadesus J et al. YhdJ, a nonessential CcrM-like DNA methyltransferase of Escherichia coli and Salmonella enterica. J Bacteriol 2007;189:4325-7.
-
(2007)
J Bacteriol
, vol.189
, pp. 4325-4327
-
-
Broadbent, S.E.1
Balbontin, R.2
Casadesus, J.3
-
20
-
-
0021100583
-
The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene
-
Brooks JE, Blumenthal RM, Gingeras TR. The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene. Nucleic Acids Res 1983;11:837-51.
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 837-851
-
-
Brooks, J.E.1
Blumenthal, R.M.2
Gingeras, T.R.3
-
21
-
-
0036016823
-
Conjugal transfer of the virulence plasmid of Salmonella enterica is regulated by the leucineresponsive regulatory protein and DNA adenine methylation
-
Camacho EM, Casadesú s J. Conjugal transfer of the virulence plasmid of Salmonella enterica is regulated by the leucineresponsive regulatory protein and DNA adenine methylation. Mol Microbiol 2002;44:1589-98.
-
(2002)
Mol Microbiol
, vol.44
, pp. 1589-1598
-
-
Camacho, E.M.1
Casadesús, J.2
-
22
-
-
25144451821
-
Regulation of traJ transcription in the Salmonella virulence plasmid by strand-specific DNA adenine hemimethylation
-
Camacho EM, Casadesú s J. Regulation of traJ transcription in the Salmonella virulence plasmid by strand-specific DNA adenine hemimethylation. Mol Microbiol 2005;57:1700-18.
-
(2005)
Mol Microbiol
, vol.57
, pp. 1700-1718
-
-
Camacho, E.M.1
Casadesús, J.2
-
23
-
-
23644445360
-
Regulation of finP transcription by DNA adenine methylation in the virulence plasmid of Salmonella enterica
-
Camacho EM, Serna A, Madrid C et al. Regulation of finP transcription by DNA adenine methylation in the virulence plasmid of Salmonella enterica. J Bacteriol 2005;187:5691-9.
-
(2005)
J Bacteriol
, vol.187
, pp. 5691-5699
-
-
Camacho, E.M.1
Serna, A.2
Madrid, C.3
-
24
-
-
0025071856
-
E. coli oriC and the dnaA gene promoter are sequestered from dam methyltransferase following the passage of the chromosomal replication fork
-
Campbell JL, Kleckner N. E. coli oriC and the dnaA gene promoter are sequestered from dam methyltransferase following the passage of the chromosomal replication fork. Cell 1990;62:967-79.
-
(1990)
Cell
, vol.62
, pp. 967-979
-
-
Campbell, J.L.1
Kleckner, N.2
-
25
-
-
33749246561
-
Epigenetic gene regulation in the bacterial world
-
Casadesú s J, Low D. Epigenetic gene regulation in the bacterial world. Microbiol Mol Biol R 2006;70:830-56.
-
(2006)
Microbiol Mol Biol R
, vol.70
, pp. 830-856
-
-
Casadesús, J.1
Low, D.2
-
26
-
-
84886040672
-
High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data
-
Chao MC, Pritchard JR, Zhang YJ et al. High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data. Nucleic Acids Res 2013;41:9033-48.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 9033-9048
-
-
Chao, M.C.1
Pritchard, J.R.2
Zhang, Y.J.3
-
27
-
-
84949293682
-
A Cytosine methytransferase modulates the cell envelope stress response in the Cholera pathogen
-
Chao MC, Zhu S, Kimura S et al. A Cytosine methytransferase modulates the cell envelope stress response in the Cholera pathogen. PLoS Genet 2015;11:1-24.
-
(2015)
PLoS Genet
, vol.11
, pp. 1-24
-
-
Chao, M.C.1
Zhu, S.2
Kimura, S.3
-
28
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus SJ, Feng S, Zhang X et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008;452:215-9.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
-
29
-
-
0036231044
-
Dam-dependent phase variation of Ag43 in Escherichia coli is altered in a seqA mutant
-
Correnti J, Munster V, Chan T et al. Dam-dependent phase variation of Ag43 in Escherichia coli is altered in a seqA mutant. Mol Microbiol 2002;44:521-32.
-
(2002)
Mol Microbiol
, vol.44
, pp. 521-532
-
-
Correnti, J.1
Munster, V.2
Chan, T.3
-
30
-
-
84861010515
-
STM2209-STM2208 (opvAB): a phase variation locus of Salmonella enterica involved in control of O-antigen chain length
-
Cota I, Blanc-Potard AB, Casadesú s J. STM2209-STM2208 (opvAB): a phase variation locus of Salmonella enterica involved in control of O-antigen chain length. PLoS One 2012;7:e36863.
-
(2012)
PLoS One
, vol.7
-
-
Cota, I.1
Blanc-Potard, A.B.2
Casadesús, J.3
-
31
-
-
84966309065
-
OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica
-
Cota I, Bunk B, Spröer C et al. OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica. Nucleic Acids Res 2016;44: 3595-609.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. 3595-3609
-
-
Cota, I.1
Bunk, B.2
Spröer, C.3
-
32
-
-
84949256747
-
Epigenetic control of Salmonella enterica O-Antigen chain length: a tradeoff between virulence and bacteriophage resistance
-
Cota I, Sánchez-Romero MA, Hernández SB et al. Epigenetic control of Salmonella enterica O-Antigen chain length: a tradeoff between virulence and bacteriophage resistance. PLoS Genet 2015;11:1-18.
-
(2015)
PLoS Genet
, vol.11
, pp. 1-18
-
-
Cota, I.1
Sánchez-Romero, M.A.2
Hernández, S.B.3
-
33
-
-
77749327485
-
Getting in the loop: regulation of development in Caulobacter crescentus
-
Curtis PD, Brun YV. Getting in the loop: regulation of development in Caulobacter crescentus. Microbiol Mol Biol R 2010;74: 13-41.
-
(2010)
Microbiol Mol Biol R
, vol.74
, pp. 13-41
-
-
Curtis, P.D.1
Brun, Y.V.2
-
34
-
-
84925883643
-
Identification of essential alphaproteobacterial genes reveals operational variability in conserved developmental and cell cycle systems
-
Curtis PD, Brun YV. Identification of essential alphaproteobacterial genes reveals operational variability in conserved developmental and cell cycle systems. Mol Microbiol 2014;93: 713-35.
-
(2014)
Mol Microbiol
, vol.93
, pp. 713-735
-
-
Curtis, P.D.1
Brun, Y.V.2
-
35
-
-
0032502779
-
Mismatch-, MutS-, MutL-, and Helicase IIdependent unwinding from the single-strand break of an incised heteroduplex
-
Dao V, Modrich P. Mismatch-, MutS-, MutL-, and Helicase IIdependent unwinding from the single-strand break of an incised heteroduplex. J Biol Chem 1998;273:9202-7.
-
(1998)
J Biol Chem
, vol.273
, pp. 9202-9207
-
-
Dao, V.1
Modrich, P.2
-
36
-
-
84895790680
-
Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti
-
De Nisco NJ, Abo RP, Wu CM et al. Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti. P Natl Acad Sci USA 2014;111:3217-24.
-
(2014)
P Natl Acad Sci USA
, vol.111
, pp. 3217-3224
-
-
De Nisco, N.J.1
Abo, R.P.2
Wu, C.M.3
-
37
-
-
77953189901
-
DNA adenine methylation is required to replicate both Vibrio cholerae chromosomes once per cell cycle
-
Demarre G, Chattoraj DK. DNA adenine methylation is required to replicate both Vibrio cholerae chromosomes once per cell cycle. PLoS Genet 2010;6:e1000939.
-
(2010)
PLoS Genet
, vol.6
-
-
Demarre, G.1
Chattoraj, D.K.2
-
38
-
-
0018829161
-
flu, a metastable gene controlling surface properties of Escherichia coli
-
Diderichsen B. flu, a metastable gene controlling surface properties of Escherichia coli. J Bacteriol 1980;141:858-67.
-
(1980)
J Bacteriol
, vol.141
, pp. 858-867
-
-
Diderichsen, B.1
-
39
-
-
0033536009
-
Feedback control of a master bacterial cell-cycle regulator
-
Domian IJ, Reisenauer A, Shapiro L. Feedback control of a master bacterial cell-cycle regulator. P Natl Acad Sci USA 1999;96:6648-53.
-
(1999)
P Natl Acad Sci USA
, vol.96
, pp. 6648-6653
-
-
Domian, I.J.1
Reisenauer, A.2
Shapiro, L.3
-
40
-
-
0042329503
-
Distinct replication requirements for the two Vibrio cholerae chromosomes
-
Egan ES, Waldor MK. Distinct replication requirements for the two Vibrio cholerae chromosomes. Cell 2003;114:521-30.
-
(2003)
Cell
, vol.114
, pp. 521-530
-
-
Egan, E.S.1
Waldor, M.K.2
-
41
-
-
2642531973
-
Epigenetics in human disease and prospects for epigenetic therapy
-
Egger G, Liang G, Aparicio A et al. Epigenetics in human disease and prospects for epigenetic therapy. Nature 2004;429: 457-63.
-
(2004)
Nature
, vol.429
, pp. 457-463
-
-
Egger, G.1
Liang, G.2
Aparicio, A.3
-
42
-
-
84870880581
-
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
-
Fang G, Munera D, Friedman DI et al. Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing. Nat Biotechnol 2012;30:1232-9.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 1232-1239
-
-
Fang, G.1
Munera, D.2
Friedman, D.I.3
-
43
-
-
84878499327
-
DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria
-
Fioravanti A, Fumeaux C, Mohapatra SS et al. DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria. PLoS Genet 2013;9:e1003541.
-
(2013)
PLoS Genet
, vol.9
-
-
Fioravanti, A.1
Fumeaux, C.2
Mohapatra, S.S.3
-
44
-
-
77952967431
-
Direct detection of DNA methylation during single-molecule, real-time sequencing
-
Flusberg Ba, Webster D, Lee J et al. Direct detection of DNA methylation during single-molecule, real-time sequencing. Nat Methods 2010;7:461-5.
-
(2010)
Nat Methods
, vol.7
, pp. 461-465
-
-
Flusberg, B.1
Webster, D.2
Lee, J.3
-
45
-
-
0026774398
-
Antirepression function in Escherichia coli for the cAMP-cAMP receptor protein transcriptional activator
-
Forsman K, Sondén B, GöranssonMet al. Antirepression function in Escherichia coli for the cAMP-cAMP receptor protein transcriptional activator. P Natl Acad Sci USA 1992;89:9880-4.
-
(1992)
P Natl Acad Sci USA
, vol.89
, pp. 9880-9884
-
-
Forsman, K.1
Sondén, B.2
Göransson, M.3
-
46
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer M, McDonald LE, Millar DS et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. P Natl Acad Sci USA 1992;89:1827-31.
-
(1992)
P Natl Acad Sci USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
-
47
-
-
0013824241
-
On the nature of the deoxyribonucleic acid methylases. Biological evidence for the multiple nature of the enzymes
-
Fujimoto D, Srinivasan PR, Borek E. On the nature of the deoxyribonucleic acid methylases. Biological evidence for the multiple nature of the enzymes. Biochemistry 1965;4: 2849-55.
-
(1965)
Biochemistry
, vol.4
, pp. 2849-2855
-
-
Fujimoto, D.1
Srinivasan, P.R.2
Borek, E.3
-
48
-
-
79955739303
-
DNA mismatch repair in eukaryotes and bacteria
-
Fukui K. DNA mismatch repair in eukaryotes and bacteria. J Nucleic Acids 2010;2010:1-16.
-
(2010)
J Nucleic Acids
, vol.2010
, pp. 1-16
-
-
Fukui, K.1
-
49
-
-
0033613170
-
DNA adenine methylase mutants of Salmonella typhimurium show defects in protein secretion, cell invasion, and M cell cytotoxicity
-
García-Del Portillo F, Pucciarelli MG, Casadesú s J. DNA adenine methylase mutants of Salmonella typhimurium show defects in protein secretion, cell invasion, and M cell cytotoxicity. P Natl Acad Sci USA 1999;96:11578-83.
-
(1999)
P Natl Acad Sci USA
, vol.96
, pp. 11578-11583
-
-
García-Del Portillo, F.1
Pucciarelli, M.G.2
Casadesús, J.3
-
50
-
-
85027947665
-
Dam methylation regulates the expression of SPI-5-encoded sopB gene in Salmonella enterica serovar Typhimurium
-
Giacomodonato MN, Llana MN, Castaneda Mdel RA et al. Dam methylation regulates the expression of SPI-5-encoded sopB gene in Salmonella enterica serovar Typhimurium. Microbes Infect 2014;16:615-22.
-
(2014)
Microbes Infect
, vol.16
, pp. 615-622
-
-
Giacomodonato, M.N.1
Llana, M.N.2
Castaneda Mdel, R.A.3
-
51
-
-
84875597378
-
DNA methylation by CcrM activates the transcription of two genes required for the division of Caulobacter crescentus
-
Gonzalez D, Collier J. DNA methylation by CcrM activates the transcription of two genes required for the division of Caulobacter crescentus. Mol Microbiol 2013;88:203-18.
-
(2013)
Mol Microbiol
, vol.88
, pp. 203-218
-
-
Gonzalez, D.1
Collier, J.2
-
52
-
-
84940848324
-
Genomic adaptations to the loss of a conserved bacterial DNA methyltransferase
-
Gonzalez D, Collier J. Genomic adaptations to the loss of a conserved bacterial DNA methyltransferase. MBio 2015;6:1-12.
-
(2015)
MBio
, vol.6
, pp. 1-12
-
-
Gonzalez, D.1
Collier, J.2
-
53
-
-
84899033664
-
The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach
-
Gonzalez D, Kozdon JB,McAdams HH et al. The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach. Nucleic Acids Res 2014;42:3720-35.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 3720-3735
-
-
Gonzalez, D.1
Kozdon, J.B.2
McAdams, H.H.3
-
54
-
-
84863994325
-
Analysis of the CtrA pathway in Magnetospirillum reveals an ancestral role in motility in alphaproteobacteria
-
Greene SE, Brilli M, Biondi EG et al. Analysis of the CtrA pathway in Magnetospirillum reveals an ancestral role in motility in alphaproteobacteria. J Bacteriol 2012;194:2973-86.
-
(2012)
J Bacteriol
, vol.194
, pp. 2973-2986
-
-
Greene, S.E.1
Brilli, M.2
Biondi, E.G.3
-
55
-
-
84938989505
-
Insights from a decade of biophysical studies on MutL: roles in strand discrimination and mismatch removal
-
Guarné A, Charbonnier JB. Insights from a decade of biophysical studies on MutL: roles in strand discrimination and mismatch removal. Prog Biophys Mol Bio 2015;117:149-56.
-
(2015)
Prog Biophys Mol Bio
, vol.117
, pp. 149-156
-
-
Guarné, A.1
Charbonnier, J.B.2
-
56
-
-
0033951395
-
Phase variation of Ag43 in Escherichia coli: Dam-dependent methylation abrogates OxyR binding and OxyR-mediated repression of transcription
-
Haagmans W, van der Woude M. Phase variation of Ag43 in Escherichia coli: Dam-dependent methylation abrogates OxyR binding and OxyR-mediated repression of transcription. Mol Microbiol 2000;35:877-87.
-
(2000)
Mol Microbiol
, vol.35
, pp. 877-887
-
-
Haagmans, W.1
van der Woude, M.2
-
57
-
-
84946708774
-
The bacterial cell cycle regulator GcrA is a s70 cofactor that drives gene expression from a subset of methylated promoters
-
Haakonsen DL, Yuan AH, Laub MT. The bacterial cell cycle regulator GcrA is a s70 cofactor that drives gene expression from a subset of methylated promoters. Genes Dev 2015;29: 2272-86.
-
(2015)
Genes Dev
, vol.29
, pp. 2272-2286
-
-
Haakonsen, D.L.1
Yuan, A.H.2
Laub, M.T.3
-
58
-
-
0028200730
-
Analysis of nonmethylated GATC sites in the Escherichia coli chromosome and identification of sites that are differentially methylated in response to environmental stimuli
-
Hale WB, Van der Woude MW, Low DA. Analysis of nonmethylated GATC sites in the Escherichia coli chromosome and identification of sites that are differentially methylated in response to environmental stimuli. J Bacteriol 1994;176: 3438-41.
-
(1994)
J Bacteriol
, vol.176
, pp. 3438-3441
-
-
Hale, W.B.1
Van der Woude, M.W.2
Low, D.A.3
-
59
-
-
0033532378
-
An essential role for DNA adenine methylation in bacterial virulence
-
Heithoff DM, Sinsheimer RL, Low DA et al. An essential role for DNA adenine methylation in bacterial virulence. Science 1999;284:967-70.
-
(1999)
Science
, vol.284
, pp. 967-970
-
-
Heithoff, D.M.1
Sinsheimer, R.L.2
Low, D.A.3
-
60
-
-
0343586537
-
Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages
-
Hénaut A, Rouxel T, Gleizes A et al. Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages. J Mol Biol 1996;257:574-85.
-
(1996)
J Mol Biol
, vol.257
, pp. 574-585
-
-
Hénaut, A.1
Rouxel, T.2
Gleizes, A.3
-
61
-
-
0030935922
-
Antigen 43 , a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12
-
Henderson IR, Meehan M, Owen P. Antigen 43 , a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12. FEMS Microbiol Rev 1997a;149:115-20.
-
(1997)
FEMS Microbiol Rev
, vol.149
, pp. 115-120
-
-
Henderson, I.R.1
Meehan, M.2
Owen, P.3
-
62
-
-
0030913437
-
A novel regulatory mechanism for a novel phase-variable outer membrane protein of Escherichia coli
-
Henderson IR, Meehan M, Owen P. A novel regulatory mechanism for a novel phase-variable outer membrane protein of Escherichia coli. Adv Exp Med Biol 1997b;412:349-55.
-
(1997)
Adv Exp Med Biol
, vol.412
, pp. 349-355
-
-
Henderson, I.R.1
Meehan, M.2
Owen, P.3
-
63
-
-
0032940207
-
The major phase-variable outer membrane protein of Escherichia coli structurally resembles the immunoglobulin A1 protease class of exported protein and is regulated by a novel mechanism involving Dam and OxyR
-
Henderson IR, Owen P. The major phase-variable outer membrane protein of Escherichia coli structurally resembles the immunoglobulin A1 protease class of exported protein and is regulated by a novel mechanism involving Dam and OxyR. J Bacteriol 1999;181:2132-41.
-
(1999)
J Bacteriol
, vol.181
, pp. 2132-2141
-
-
Henderson, I.R.1
Owen, P.2
-
64
-
-
0019367342
-
Escherichia coli K-12 clones that overproduce dam methylase are hypermutable
-
Herman GE, Modrich P. Escherichia coli K-12 clones that overproduce dam methylase are hypermutable. J Bacteriol 1981;145:644-6.
-
(1981)
J Bacteriol
, vol.145
, pp. 644-646
-
-
Herman, G.E.1
Modrich, P.2
-
65
-
-
0020069547
-
Escherichia coli dam methylase
-
Hermann GE, Modrich P. Escherichia coli dam methylase. J Biol Chem 1982;257:2605-12.
-
(1982)
J Biol Chem
, vol.257
, pp. 2605-2612
-
-
Hermann, G.E.1
Modrich, P.2
-
66
-
-
0037058946
-
Self-perpetuating epigenetic pili switches in bacteria
-
Hernday A, Krabbe M, Braaten B et al. Self-perpetuating epigenetic pili switches in bacteria. P Natl Acad Sci USA 2002; 99(Suppl 4):16470-6.
-
(2002)
P Natl Acad Sci USA
, vol.99
, pp. 16470-16476
-
-
Hernday, A.1
Krabbe, M.2
Braaten, B.3
-
67
-
-
0242266619
-
The mechanism by which DNA adenine methylase and PapI activate the Pap epigenetic switch
-
Hernday AD, Braaten BA, Low DA. The mechanism by which DNA adenine methylase and PapI activate the Pap epigenetic switch. Mol Cell 2003;12:947-57.
-
(2003)
Mol Cell
, vol.12
, pp. 947-957
-
-
Hernday, A.D.1
Braaten, B.A.2
Low, D.A.3
-
68
-
-
2342476606
-
Control the genetic circuit driving a bacterial cell cycle
-
Holtzendorff J, Hung D, Brende P et al. Control the genetic circuit driving a bacterial cell cycle. Science 2004;304:983-8.
-
(2004)
Science
, vol.304
, pp. 983-988
-
-
Holtzendorff, J.1
Hung, D.2
Brende, P.3
-
69
-
-
28244473355
-
DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus
-
Hottes AK, Shapiro L, McAdams HH. DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus. Mol Microbiol 2005;58:1340-53.
-
(2005)
Mol Microbiol
, vol.58
, pp. 1340-1353
-
-
Hottes, A.K.1
Shapiro, L.2
McAdams, H.H.3
-
70
-
-
0035850251
-
Molecular mechanisms of DNA mismatch repair
-
Hsieh P. Molecular mechanisms of DNA mismatch repair. Mutat Res 2001;486:71-87.
-
(2001)
Mutat Res
, vol.486
, pp. 71-87
-
-
Hsieh, P.1
-
71
-
-
84929431366
-
Genome modification in Enterococcus faecalis OG1RF assessed by bisulfite sequencing and single-molecule real-time sequencing
-
Huo W, Adams HM, Zhang MQ et al. Genome modification in Enterococcus faecalis OG1RF assessed by bisulfite sequencing and single-molecule real-time sequencing. J Bacteriol 2015;197:1939-51.
-
(2015)
J Bacteriol
, vol.197
, pp. 1939-1951
-
-
Huo, W.1
Adams, H.M.2
Zhang, M.Q.3
-
72
-
-
79955458970
-
Phase variation and adaptation in bacteria: a 'Red Queen's Race'
-
Jayaraman R. Phase variation and adaptation in bacteria: a 'Red Queen's Race'. Curr Sci 2011;100:1163-71.
-
(2011)
Curr Sci
, vol.100
, pp. 1163-1171
-
-
Jayaraman, R.1
-
73
-
-
0033613914
-
Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E
-
Jerome LJ, van Biesen TV, Frost LS. Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E. J Mol Biol 1999;285: 1457-73.
-
(1999)
J Mol Biol
, vol.285
, pp. 1457-1473
-
-
Jerome, L.J.1
van Biesen, T.V.2
Frost, L.S.3
-
74
-
-
0026021682
-
Phase variation of gonococcal pili by frameshift mutation in pilC, a novel gene for pilus assembly
-
Jonsson AB, Nyberg G, Normark S. Phase variation of gonococcal pili by frameshift mutation in pilC, a novel gene for pilus assembly. EMBO J 1991;10:477-88.
-
(1991)
EMBO J
, vol.10
, pp. 477-488
-
-
Jonsson, A.B.1
Nyberg, G.2
Normark, S.3
-
75
-
-
0035179775
-
DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae
-
Julio SM, Heithoff DM, Provenzano D et al. DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae. Infect Immun 2001;69:7610-5.
-
(2001)
Infect Immun
, vol.69
, pp. 7610-7615
-
-
Julio, S.M.1
Heithoff, D.M.2
Provenzano, D.3
-
76
-
-
0035033642
-
The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated
-
Kahng LS, Shapiro L. The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated. J Bacteriol 2001;183:3065-75.
-
(2001)
J Bacteriol
, vol.183
, pp. 3065-3075
-
-
Kahng, L.S.1
Shapiro, L.2
-
77
-
-
84863314385
-
Escherichia coli reveals its role in stationary phase transcription
-
Kahramanoglou C, Prieto AI, Khedkar S et al. Escherichia coli reveals its role in stationary phase transcription. Nat Commun 2012;3:886-9.
-
(2012)
Nat Commun
, vol.3
, pp. 886-889
-
-
Kahramanoglou, C.1
Prieto, A.I.2
Khedkar, S.3
-
78
-
-
15044354184
-
Dimeric configuration of SeqA protein bound to a pair of hemi-methylated GATC sequences
-
Kang S, Han JS, Kim KP et al. Dimeric configuration of SeqA protein bound to a pair of hemi-methylated GATC sequences. Nucleic Acids Res 2005;33:1524-31.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1524-1531
-
-
Kang, S.1
Han, J.S.2
Kim, K.P.3
-
79
-
-
0033597127
-
Interaction of SeqA and Dam methylase on the hemimethylated origin of Escherichia coli chromosomal DNA replication
-
Kang S, Lee H, Han JS et al. Interaction of SeqA and Dam methylase on the hemimethylated origin of Escherichia coli chromosomal DNA replication. J Biol Chem 1999;274:11463-8.
-
(1999)
J Biol Chem
, vol.274
, pp. 11463-11468
-
-
Kang, S.1
Lee, H.2
Han, J.S.3
-
80
-
-
84872592804
-
DnaA binding locus datA promotes DnaAATP hydrolysis to enable cell cycle-coordinated replication initiation
-
Kasho K, Katayama T. DnaA binding locus datA promotes DnaAATP hydrolysis to enable cell cycle-coordinated replication initiation. P Natl Acad Sci USA 2013;110:936-41.
-
(2013)
P Natl Acad Sci USA
, vol.110
, pp. 936-941
-
-
Kasho, K.1
Katayama, T.2
-
81
-
-
0032504050
-
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase
-
Katayama T, Kubota T, Kurokawa K et al. The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase. Cell 1998;94: 61-71.
-
(1998)
Cell
, vol.94
, pp. 61-71
-
-
Katayama, T.1
Kubota, T.2
Kurokawa, K.3
-
82
-
-
0035422651
-
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli
-
Kato JI, Katayama T. Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J 2001;20:4253-62.
-
(2001)
EMBO J
, vol.20
, pp. 4253-4262
-
-
Kato, J.I.1
Katayama, T.2
-
83
-
-
0035883519
-
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
-
Kobayashi I. Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res 2001;29:3742-56.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3742-3756
-
-
Kobayashi, I.1
-
84
-
-
84888313076
-
Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle
-
Kozdon JB, Melfi MD, Luong K et al. Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle. P Natl Acad Sci USA 2013;110:E4658-67.
-
(2013)
P Natl Acad Sci USA
, vol.110
, pp. E4658-E4667
-
-
Kozdon, J.B.1
Melfi, M.D.2
Luong, K.3
-
85
-
-
0017411721
-
Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation
-
Lacks S, Greenberg B. Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation. J Mol Biol 1977;114:153-68.
-
(1977)
J Mol Biol
, vol.114
, pp. 153-168
-
-
Lacks, S.1
Greenberg, B.2
-
86
-
-
0024396565
-
DNA mismatch correction in a defined system
-
Lahue RS, Au KG, Modrich P. DNA mismatch correction in a defined system. Science 1989;245:160-64.
-
(1989)
Science
, vol.245
, pp. 160-164
-
-
Lahue, R.S.1
Au, K.G.2
Modrich, P.3
-
87
-
-
0037007079
-
Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle
-
Laub MT, Chen SL, Shapiro L et al. Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle. P Natl Acad Sci USA 2002;99:4632-37.
-
(2002)
P Natl Acad Sci USA
, vol.99
, pp. 4632-4637
-
-
Laub, M.T.1
Chen, S.L.2
Shapiro, L.3
-
88
-
-
84930626765
-
The complete methylome of Helicobacter pylori UM032
-
Lee WC, Anton BP, Wang S et al. The complete methylome of Helicobacter pylori UM032. BMC Genomics 2015;16:424.
-
(2015)
BMC Genomics
, vol.16
, pp. 424
-
-
Lee, W.C.1
Anton, B.P.2
Wang, S.3
-
90
-
-
38049125557
-
Mechanisms and functions of DNA mismatch repair
-
Li G-M. Mechanisms and functions of DNA mismatch repair. Cell Res 2008;18:85-98.
-
(2008)
Cell Res
, vol.18
, pp. 85-98
-
-
Li, G.-M.1
-
91
-
-
0028197203
-
The initiation cascade for chromosome replication in wild-type and Dam methyltransferase deficient Escherichia coli cells
-
Løbner-Olesen A, Hansen FG, Rasmussen K V et al. The initiation cascade for chromosome replication in wild-type and Dam methyltransferase deficient Escherichia coli cells. EMBO J 1994;13:1856-62.
-
(1994)
EMBO J
, vol.13
, pp. 1856-1862
-
-
Løbner-Olesen, A.1
Hansen, F.G.2
Rasmussen, K.V.3
-
92
-
-
0037446886
-
Role of SeqA andDam in Escherichia coli gene expression: a global/microarray analysis
-
Løbner-Olesen A,Marinus MG, Hansen FG. Role of SeqA andDam in Escherichia coli gene expression: a global/microarray analysis. P Natl Acad Sci USA 2003;100:4672-7
-
(2003)
P Natl Acad Sci USA
, vol.100
, pp. 4672-4677
-
-
Løbner-Olesen, A.1
Marinus, M.G.2
Hansen, F.G.3
-
94
-
-
0035189042
-
Roles of DNA adenine methylation in regulating bacterial gene expression and virulence
-
Low DA, Weyand NJ, Mahan MJ. Roles of DNA adenine methylation in regulating bacterial gene expression and virulence. Infect Immun 2001;69:7197-204.
-
(2001)
Infect Immun
, vol.69
, pp. 7197-7204
-
-
Low, D.A.1
Weyand, N.J.2
Mahan, M.J.3
-
95
-
-
0028219947
-
SeqA: a negative modulator of replication initiation in E. coli
-
Lu M, Campbell JL, Boye E et al. SeqA: a negative modulator of replication initiation in E. coli. Cell 1994;77:413-26.
-
(1994)
Cell
, vol.77
, pp. 413-426
-
-
Lu, M.1
Campbell, J.L.2
Boye, E.3
-
96
-
-
83855165675
-
The myriad roles of cyclic AMP in microbial pathogens, from signal to sword
-
McDonough KA, Rodriguez A. The myriad roles of cyclic AMP in microbial pathogens, from signal to sword. Nat Rev Microbiol 2011;10:27-38.
-
(2011)
Nat Rev Microbiol
, vol.10
, pp. 27-38
-
-
McDonough, K.A.1
Rodriguez, A.2
-
97
-
-
0032963282
-
Chromosome methylation and measurement of faithful, once and only once per cell cycle chromosome replication in Caulobacter crescentus
-
Marczynski GT. Chromosome methylation and measurement of faithful, once and only once per cell cycle chromosome replication in Caulobacter crescentus. J Bacteriol 1999;181:1984-93.
-
(1999)
J Bacteriol
, vol.181
, pp. 1984-1993
-
-
Marczynski, G.T.1
-
99
-
-
0015873924
-
Isolation of deoxyribonucleic acid methylase mutants of Escherichia coli K-12
-
Marinus MG, Morris NR. Isolation of deoxyribonucleic acid methylase mutants of Escherichia coli K-12. J Bacteriol 1973;114:1143-50.
-
(1973)
J Bacteriol
, vol.114
, pp. 1143-1150
-
-
Marinus, M.G.1
Morris, N.R.2
-
100
-
-
0016243832
-
Biological function for 6-methyladenine residues in the DNA of Escherichia coli K12
-
Marinus MG, Morris NR. Biological function for 6-methyladenine residues in the DNA of Escherichia coli K12. J Mol Biol 1974;85:309-22.
-
(1974)
J Mol Biol
, vol.85
, pp. 309-322
-
-
Marinus, M.G.1
Morris, N.R.2
-
101
-
-
84856473209
-
Conservation of Dcmmediated cytosine DNA methylation in Escherichia coli
-
Militello KT, Simon RD, Qureshi M et al. Conservation of Dcmmediated cytosine DNA methylation in Escherichia coli. FEMS Microbiol Lett 2012;328:78-85.
-
(2012)
FEMS Microbiol Lett
, vol.328
, pp. 78-85
-
-
Militello, K.T.1
Simon, R.D.2
Qureshi, M.3
-
102
-
-
34247271405
-
DNA replication initiation: mechanisms and regulation in bacteria
-
Mott ML, Berger JM. DNA replication initiation: mechanisms and regulation in bacteria. Nat Rev Microbiol 2007;5:343-55.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 343-355
-
-
Mott, M.L.1
Berger, J.M.2
-
104
-
-
84892700942
-
Computational and genetic reduction of a cell cycle to its simplest, primordial components
-
Murray SM, Panis G, Fumeaux C et al. Computational and genetic reduction of a cell cycle to its simplest, primordial components. PLoS Biol 2013;11:e1001749.
-
(2013)
PLoS Biol
, vol.11
-
-
Murray, S.M.1
Panis, G.2
Fumeaux, C.3
-
105
-
-
38949213341
-
Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells
-
Nielsen O, Løbner-Olesen A. Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells. EMBO Rep 2008;9:151-6.
-
(2008)
EMBO Rep
, vol.9
, pp. 151-156
-
-
Nielsen, O.1
Løbner-Olesen, A.2
-
106
-
-
0027417863
-
Regulation of pyelonephritisassociated pili phase-variation in Escherichia coli: binding of the Papl and the Lrp regulatory proteins is controlled by DNA methylation
-
Nou X, Skinner B, Braaten B et al. Regulation of pyelonephritisassociated pili phase-variation in Escherichia coli: binding of the Papl and the Lrp regulatory proteins is controlled by DNA methylation. Mol Microbiol 1993;7:545-53.
-
(1993)
Mol Microbiol
, vol.7
, pp. 545-553
-
-
Nou, X.1
Skinner, B.2
Braaten, B.3
-
107
-
-
0036366541
-
Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli
-
Oshima T,Wada C, Kawagoe Y et al. Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Mol Microbiol 2002;45:673-95.
-
(2002)
Mol Microbiol
, vol.45
, pp. 673-695
-
-
Oshima, T.1
Wada, C.2
Kawagoe, Y.3
-
108
-
-
15744381480
-
DNA methylation modulates Salmonella enterica serovar Typhimurium virulence in Caenorhabditis elegans
-
Oza JP, Yeh JB, Reich NO. DNA methylation modulates Salmonella enterica serovar Typhimurium virulence in Caenorhabditis elegans. FEMS Microbiol Lett 2005;245:53-9.
-
(2005)
FEMS Microbiol Lett
, vol.245
, pp. 53-59
-
-
Oza, J.P.1
Yeh, J.B.2
Reich, N.O.3
-
109
-
-
84934276205
-
Versatility of global transcriptional regulators in alpha-Proteobacteria: from essential cell cycle control to ancillary functions
-
Panis G, Murray SR, Viollier PH. Versatility of global transcriptional regulators in alpha-Proteobacteria: from essential cell cycle control to ancillary functions. FEMS Microbiol Rev 2015;39:120-33.
-
(2015)
FEMS Microbiol Rev
, vol.39
, pp. 120-133
-
-
Panis, G.1
Murray, S.R.2
Viollier, P.H.3
-
110
-
-
77954255964
-
Structure of the endonuclease domain of MutL: unlicensed to cut
-
Pillon MC, Lorenowicz JJ, Uckelmann M et al. Structure of the endonuclease domain of MutL: unlicensed to cut. Mol Cell 2011;39:145-51.
-
(2011)
Mol Cell
, vol.39
, pp. 145-151
-
-
Pillon, M.C.1
Lorenowicz, J.J.2
Uckelmann, M.3
-
111
-
-
84929465853
-
Genome-wide methylation patterns in Salmonella enterica subsp. enterica Serovars
-
Pirone-Davies C, Hoffmann M, Roberts RJ et al. Genome-wide methylation patterns in Salmonella enterica subsp. enterica Serovars. PLoS One 2015;10:1-13.
-
(2015)
PLoS One
, vol.10
, pp. 1-13
-
-
Pirone-Davies, C.1
Hoffmann, M.2
Roberts, R.J.3
-
112
-
-
77957970301
-
Epigenetic modifications and human disease
-
Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol 2010;28:1057-68.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1057-1068
-
-
Portela, A.1
Esteller, M.2
-
113
-
-
0032859656
-
Bacterial DNA methylation: a cell cycle regulator?
-
Reisenauer A, Kahng LS, McCollum S et al. Bacterial DNA methylation: a cell cycle regulator? J Bacteriol 1999;181:5135-9.
-
(1999)
J Bacteriol
, vol.181
, pp. 5135-5139
-
-
Reisenauer, A.1
Kahng, L.S.2
McCollum, S.3
-
115
-
-
0037119976
-
DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter
-
Reisenauer A, Shapiro L. DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter. EMBO J 2002;21:4969-77.
-
(2002)
EMBO J
, vol.21
, pp. 4969-4977
-
-
Reisenauer, A.1
Shapiro, L.2
-
116
-
-
0037512322
-
Development and maturation of Escherichia coli K-12 biofilms
-
Reisner A, Haagensen JAJ, Schembri MA et al. Development and maturation of Escherichia coli K-12 biofilms. Mol Microbiol 2003;48:933-46.
-
(2003)
Mol Microbiol
, vol.48
, pp. 933-946
-
-
Reisner, A.1
Haagensen, J.A.J.2
Schembri, M.A.3
-
117
-
-
0026551302
-
The Escherichia coli chromosome contains specific, unmethylated dam and dcm sites
-
Ringquist S, Smith CL. The Escherichia coli chromosome contains specific, unmethylated dam and dcm sites. P Natl Acad Sci USA 1992;89:4539-43.
-
(1992)
P Natl Acad Sci USA
, vol.89
, pp. 4539-4543
-
-
Ringquist, S.1
Smith, C.L.2
-
118
-
-
2342565019
-
The difficult interpretation of transcriptome data: the case of the GATC regulatory network
-
Riva A, Delorme MO, Chevalier T et al. The difficult interpretation of transcriptome data: the case of the GATC regulatory network. Comput Biol Chem 2004a;28:109-18.
-
(2004)
Comput Biol Chem
, vol.28
, pp. 109-118
-
-
Riva, A.1
Delorme, M.O.2
Chevalier, T.3
-
119
-
-
9144272782
-
Characterization of the GATC regulatory network in E. coli
-
Riva A, Delorme M-O, Chevalier T et al. Characterization of the GATC regulatory network in E. coli. BMC Genomics 2004b; 5:48.
-
(2004)
BMC Genomics
, vol.5
, pp. 48
-
-
Riva, A.1
Delorme, M.-O.2
Chevalier, T.3
-
120
-
-
26444530070
-
Analysis of global gene expression and double-strand-break formation in DNA adenine ethyltransferase-andmismatch repairdeficient Escherichia coli
-
Robbins-Manke JL, Zdraveski ZZ, Essigmann JM et al. Analysis of global gene expression and double-strand-break formation in DNA adenine ethyltransferase-andmismatch repairdeficient Escherichia coli. J Bacteriol 2005;187:7027-37.
-
(2005)
J Bacteriol
, vol.187
, pp. 7027-7037
-
-
Robbins-Manke, J.L.1
Zdraveski, Z.Z.2
Essigmann, J.M.3
-
121
-
-
0028172870
-
The Gal(alpha 1-4)Galspecific tip adhesin of Escherichia coli P-fimbriae is needed for pyelonephritis to occur in the normal urinary tract
-
Roberts JA, Marklund BI, Ilver D et al. The Gal(alpha 1-4)Galspecific tip adhesin of Escherichia coli P-fimbriae is needed for pyelonephritis to occur in the normal urinary tract. P Natl Acad Sci USA 1994;91:11889-93.
-
(1994)
P Natl Acad Sci USA
, vol.91
, pp. 11889-11893
-
-
Roberts, J.A.1
Marklund, B.I.2
Ilver, D.3
-
122
-
-
0034043880
-
The Brucella abortus CcrM DNA methyltransferase is essential for viability, and its overexpression attenuates intracellular replication in murine macrophages
-
Robertson GT, Reisenauer A, Wright R et al. The Brucella abortus CcrM DNA methyltransferase is essential for viability, and its overexpression attenuates intracellular replication in murine macrophages. J Bacteriol 2000;182:3482-9.
-
(2000)
J Bacteriol
, vol.182
, pp. 3482-3489
-
-
Robertson, G.T.1
Reisenauer, A.2
Wright, R.3
-
123
-
-
78649639015
-
Dynamic distribution of SeqA protein across the chromosome of Escherichia coli K-12
-
Sánchez-Romero MA, Busby SJW, Dyer NP et al. Dynamic distribution of SeqA protein across the chromosome of Escherichia coli K-12. MBio 2010;1:1-9.
-
(2010)
MBio
, vol.1
, pp. 1-9
-
-
Sánchez-Romero, M.A.1
Busby, S.J.W.2
Dyer, N.P.3
-
124
-
-
84873883629
-
Dam methylation participates in the regulation of PmrA/PmrB and RcsC/RcsD/RcsB two component regulatory systems in Salmonella enterica serovar Enteritidis
-
Sarnacki SH, Castaneda Mdel RA, Llana MN et al. Dam methylation participates in the regulation of PmrA/PmrB and RcsC/RcsD/RcsB two component regulatory systems in Salmonella enterica serovar Enteritidis. PLoS One 2013;8: 1-11.
-
(2013)
PLoS One
, vol.8
, pp. 1-11
-
-
Sarnacki, S.H.1
Castaneda Mdel, R.A.2
Llana, M.N.3
-
125
-
-
0037384574
-
Global gene expression in Escherichia coli biofilms
-
Schembri MA, Kjaergaard K, Klemm P. Global gene expression in Escherichia coli biofilms. Mol Microbiol 2003;48:253-67.
-
(2003)
Mol Microbiol
, vol.48
, pp. 253-267
-
-
Schembri, M.A.1
Kjaergaard, K.2
Klemm, P.3
-
126
-
-
84867116466
-
The Caulobacter crescentus ctrA P1 promoter is essential for the coordination of cell cycle events that prevent the overinitiation of DNA replication
-
Schredl AT, Perez Mora YG, Herrera A et al. The Caulobacter crescentus ctrA P1 promoter is essential for the coordination of cell cycle events that prevent the overinitiation of DNA replication. Microbiology 2012;158:2492-503.
-
(2012)
Microbiology
, vol.158
, pp. 2492-2503
-
-
Schredl, A.T.1
Perez Mora, Y.G.2
Herrera, A.3
-
127
-
-
55849132180
-
An assessment of the role of DNA adenine methyltransferase on gene expression regulation in E coli[i/i]
-
Seshasayee ASN. An assessment of the role of DNA adenine methyltransferase on gene expression regulation in E coli[i/i]. PLoS One 2007;2:1-4.
-
(2007)
PLoS One
, vol.2
, pp. 1-4
-
-
Seshasayee, A.S.N.1
-
128
-
-
0022744245
-
Timing of initiation of chromosome replication in individual Escherichia coli cells
-
Skarstad K, Boye E, Steen HB. Timing of initiation of chromosome replication in individual Escherichia coli cells. EMBO J 1986;5:1711-7.
-
(1986)
EMBO J
, vol.5
, pp. 1711-1717
-
-
Skarstad, K.1
Boye, E.2
Steen, H.B.3
-
129
-
-
2142647271
-
Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus
-
Skerker JM, Laub MT. Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus. Nat Rev Microbiol 2004;2:325-37.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 325-337
-
-
Skerker, J.M.1
Laub, M.T.2
-
130
-
-
84964342023
-
DistAMo: aweb-based tool to characterize DNA-motif distribution on bacterial chromosomes
-
Sobetzko P, Jelonek L, StrickertMet al. DistAMo: aweb-based tool to characterize DNA-motif distribution on bacterial chromosomes. Front Microbiol 2016;7:1-11.
-
(2016)
Front Microbiol
, vol.7
, pp. 1-11
-
-
Sobetzko, P.1
Jelonek, L.2
Strickert, M.3
-
131
-
-
0033571225
-
Asymmetry of Dam remethylation on the leading and lagging arms of plasmid replicative intermediates
-
Stancheva I, Koller T, Sogo JM. Asymmetry of Dam remethylation on the leading and lagging arms of plasmid replicative intermediates. EMBO J 1999;18:6542-51.
-
(1999)
EMBO J
, vol.18
, pp. 6542-6551
-
-
Stancheva, I.1
Koller, T.2
Sogo, J.M.3
-
132
-
-
0030035042
-
A cell cycle-regulated bacterial DNA methyltransferase is essential for viability
-
Stephens C, Reisenauer A, Wright R et al. A cell cycle-regulated bacterial DNA methyltransferase is essential for viability. P Natl Acad Sci USA 1996;93:1210-4.
-
(1996)
P Natl Acad Sci USA
, vol.93
, pp. 1210-1214
-
-
Stephens, C.1
Reisenauer, A.2
Wright, R.3
-
133
-
-
0028904628
-
Coordinate cell cycle control of a Caulobacter DNA methyltransferase and the flagellar genetic hierarchy
-
Stephens CM, Zweiger G, Shapiro L. Coordinate cell cycle control of a Caulobacter DNA methyltransferase and the flagellar genetic hierarchy. J Bacteriol 1995;177:1662-9.
-
(1995)
J Bacteriol
, vol.177
, pp. 1662-1669
-
-
Stephens, C.M.1
Zweiger, G.2
Shapiro, L.3
-
134
-
-
0030045741
-
Contribution of facilitated diffusion and processive catalysis to enzyme efficiency: implications for the EcoRI restriction-modification system
-
Surby MA, Reich NO. Contribution of facilitated diffusion and processive catalysis to enzyme efficiency: implications for the EcoRI restriction-modification system. Biochemistry 1996;35:2201-8.
-
(1996)
Biochemistry
, vol.35
, pp. 2201-2208
-
-
Surby, M.A.1
Reich, N.O.2
-
135
-
-
0032924459
-
Synthesis of FinP RNA by plasmids F and pSLT is regulated by DNA adenine methylation
-
Torreblanca J, Marques S, Casadesus J. Synthesis of FinP RNA by plasmids F and pSLT is regulated by DNA adenine methylation. Genetics 1999;152:31-45.
-
(1999)
Genetics
, vol.152
, pp. 31-45
-
-
Torreblanca, J.1
Marques, S.2
Casadesus, J.3
-
136
-
-
0036300777
-
The Escherichia coli Dam DNA methyltransferasemodifies DNA in a highly processive reaction
-
Urig S, Gowher H, Hermann A et al. The Escherichia coli Dam DNA methyltransferasemodifies DNA in a highly processive reaction. J Mol Biol 2002;319:1085-96.
-
(2002)
J Mol Biol
, vol.319
, pp. 1085-1096
-
-
Urig, S.1
Gowher, H.2
Hermann, A.3
-
137
-
-
84893790541
-
Fuse or die: how to survive the loss of Dam in Vibrio cholerae
-
Val ME, Kennedy SP, Soler-Bistué AJ et al. Fuse or die: how to survive the loss of Dam in Vibrio cholerae. Mol Microbiol 2014;91:665-78.
-
(2014)
Mol Microbiol
, vol.91
, pp. 665-678
-
-
Val, M.E.1
Kennedy, S.P.2
Soler-Bistué, A.J.3
-
138
-
-
0028148879
-
SeqA limits DnaA activity in replication from oriC in escherichia coli
-
von Freiesleben U, Rasmussen KV, Schaechter M. SeqA limits DnaA activity in replication from oriC in escherichia coli. Mol Microbiol 1994;14:763-72.
-
(1994)
Mol Microbiol
, vol.14
, pp. 763-772
-
-
von Freiesleben, U.1
Rasmussen, K.V.2
Schaechter, M.3
-
139
-
-
64749105626
-
The Escherichia coli SeqA protein
-
Waldminghaus T, Skarstad K. The Escherichia coli SeqA protein. Plasmid 2009;61:141-50.
-
(2009)
Plasmid
, vol.61
, pp. 141-150
-
-
Waldminghaus, T.1
Skarstad, K.2
-
140
-
-
77954169130
-
ChIP on Chip: surprising results are often artifacts
-
Waldminghaus T, Skarstad K. ChIP on Chip: surprising results are often artifacts. BMC Genomics 2010;11:414.
-
(2010)
BMC Genomics
, vol.11
, pp. 414
-
-
Waldminghaus, T.1
Skarstad, K.2
-
141
-
-
0036231043
-
Competitive interaction of the OxyR DNA-binding protein and the Dam methylase at the antigen 43 gene regulatory region in Escherichia coli
-
Waldron DE, Owen P, Dorman CJ. Competitive interaction of the OxyR DNA-binding protein and the Dam methylase at the antigen 43 gene regulatory region in Escherichia coli. Mol Microbiol 2002;44:509-20.
-
(2002)
Mol Microbiol
, vol.44
, pp. 509-520
-
-
Waldron, D.E.1
Owen, P.2
Dorman, C.J.3
-
142
-
-
0026716837
-
Awhole genome approach to in vivo DNAprotein interactions in E. coli
-
Wang MX, Church GM. Awhole genome approach to in vivo DNAprotein interactions in E. coli. Nature 1992;360:606-10.
-
(1992)
Nature
, vol.360
, pp. 606-610
-
-
Wang, M.X.1
Church, G.M.2
-
143
-
-
0022536577
-
Inviability of dam recA and dam recB cells of Escherichia coli is correlated with their inability to repair DNA double-strand breaks produced by mismatch repair
-
Wang TCV, Smith KC. Inviability of dam recA and dam recB cells of Escherichia coli is correlated with their inability to repair DNA double-strand breaks produced by mismatch repair. J Bacteriol 1986;165:1023-5.
-
(1986)
J Bacteriol
, vol.165
, pp. 1023-1025
-
-
Wang, T.C.V.1
Smith, K.C.2
-
144
-
-
0023656822
-
Isolation and characterization of the Escherichia coli mutH Gene product
-
Welsh KM, Lug A, Clark S et al. Isolation and characterization of the Escherichia coli mutH Gene product. J Biol Chem 1987;262:15624-9.
-
(1987)
J Biol Chem
, vol.262
, pp. 15624-15629
-
-
Welsh, K.M.1
Lug, A.2
Clark, S.3
-
145
-
-
33646008874
-
N6-methyl-adenine: an epigenetic signal for DNA-protein interactions
-
Wion D, Casadesú s J. N6-methyl-adenine: an epigenetic signal for DNA-protein interactions. Nat Rev Microbiol 2006;4:183-92.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 183-192
-
-
Wion, D.1
Casadesús, J.2
-
146
-
-
0030030484
-
Epigenetic phase variation of the pap operon in Escherichia coli
-
Woude M Van Der, Braaten B, Low D. Epigenetic phase variation of the pap operon in Escherichia coli. Trends Microbiol 1996;4: 5-9.
-
(1996)
Trends Microbiol
, vol.4
, pp. 5-9
-
-
Van Der Woude, M.1
Braaten, B.2
Low, D.3
-
147
-
-
0030931867
-
The CcrM DNA methyltransferase is widespread in the alpha subdivision of proteobacteria, and its essential functions are conserved in Rhizobium meliloti and Caulobacter crescentus
-
Wright R, Stephens C, Shapiro L. The CcrM DNA methyltransferase is widespread in the alpha subdivision of proteobacteria, and its essential functions are conserved in Rhizobium meliloti and Caulobacter crescentus. J Bacteriol 1997;179:5869-77.
-
(1997)
J Bacteriol
, vol.179
, pp. 5869-5877
-
-
Wright, R.1
Stephens, C.2
Shapiro, L.3
-
148
-
-
0029743593
-
Caulobacter Lon protease has a critical role in cell-cycle control of DNA methylation
-
Wright R, Stephens C, Zweiger G et al. Caulobacter Lon protease has a critical role in cell-cycle control of DNA methylation. Gene Dev 1996;10:1532-42.
-
(1996)
Gene Dev
, vol.10
, pp. 1532-1542
-
-
Wright, R.1
Stephens, C.2
Zweiger, G.3
-
149
-
-
84924366615
-
The global regulatory architecture of transcription during the Caulobacter cell cycle
-
Zhou B, Schrader JM, Kalogeraki VS et al. The global regulatory architecture of transcription during the Caulobacter cell cycle. PLOS Genet 2015;11:e1004831.
-
(2015)
PLOS Genet
, vol.11
-
-
Zhou, B.1
Schrader, J.M.2
Kalogeraki, V.S.3
-
150
-
-
0028157225
-
A Caulobacter DNA methyltransferase that functions only in the predivisional cell
-
Zweiger G,Marczynski GT, Shapiro L. A Caulobacter DNA methyltransferase that functions only in the predivisional cell. J Mol Biol 1994;235:472-85.
-
(1994)
J Mol Biol
, vol.235
, pp. 472-485
-
-
Zweiger, G.1
Marczynski, G.T.2
Shapiro, L.3
|