메뉴 건너뛰기




Volumn 110, Issue 3, 2013, Pages 936-941

DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation

Author keywords

AAA+; Bacteria; In vitro reconstitution; Initiation regulation; Nucleoprotein complex

Indexed keywords

ADENOSINE TRIPHOSPHATE; REPLICATION INITIATOR PROTEIN DNAA;

EID: 84872592804     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1212070110     Document Type: Article
Times cited : (88)

References (40)
  • 1
    • 0036843139 scopus 로고    scopus 로고
    • The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication
    • Messer W (2002) The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication. FEMS Microbiol Rev 26(4):355-374.
    • (2002) FEMS Microbiol Rev , vol.26 , Issue.4 , pp. 355-374
    • Messer, W.1
  • 2
    • 76949086750 scopus 로고    scopus 로고
    • Regulation of the replication cycle: Conserved and diverse regulatory systems for DnaA and oriC
    • Katayama T, Ozaki S, Keyamura K, Fujimitsu K (2010) Regulation of the replication cycle: Conserved and diverse regulatory systems for DnaA and oriC. Nat Rev Microbiol 8(3):163-170.
    • (2010) Nat Rev Microbiol , vol.8 , Issue.3 , pp. 163-170
    • Katayama, T.1    Ozaki, S.2    Keyamura, K.3    Fujimitsu, K.4
  • 3
    • 80053564711 scopus 로고    scopus 로고
    • Replication initiation at the Escherichia coli chromosomal origin
    • Kaguni JM (2011) Replication initiation at the Escherichia coli chromosomal origin. Curr Opin Chem Biol 15(5):606-613.
    • (2011) Curr Opin Chem Biol , vol.15 , Issue.5 , pp. 606-613
    • Kaguni, J.M.1
  • 4
    • 80053266375 scopus 로고    scopus 로고
    • Regulation of DnaA assembly and activity: Taking directions from the genome
    • Leonard AC, Grimwade JE (2011) Regulation of DnaA assembly and activity: Taking directions from the genome. Annu Rev Microbiol 65:19-35.
    • (2011) Annu Rev Microbiol , vol.65 , pp. 19-35
    • Leonard, A.C.1    Grimwade, J.E.2
  • 5
    • 0037119995 scopus 로고    scopus 로고
    • The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation
    • Erzberger JP, Pirruccello MM, Berger JM (2002) The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation. EMBO J 21 (18):4763-4773.
    • (2002) EMBO J , vol.21 , Issue.18 , pp. 4763-4773
    • Erzberger, J.P.1    Pirruccello, M.M.2    Berger, J.M.3
  • 6
    • 0037177830 scopus 로고    scopus 로고
    • A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication. Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo
    • DOI 10.1074/jbc.M108303200
    • Nishida S, et al. (2002) A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo. J Biol Chem 277(17):14986-14995. (Pubitemid 34952573)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.17 , pp. 14986-14995
    • Nishida, S.1    Fujimitsu, K.2    Sekimizu, K.3    Ohmura, T.4    Ueda, T.5    Katayama, T.6
  • 8
    • 22844437103 scopus 로고    scopus 로고
    • Formation of an ATP-DnaA-specific initiation complex requires DnaA arginine 285, a conserved motif in the AAA+ protein family
    • DOI 10.1074/jbc.M502764200
    • Kawakami H, Keyamura K, Katayama T (2005) Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family. J Biol Chem 280(29):27420-27430. (Pubitemid 41040784)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.29 , pp. 27420-27430
    • Kawakamii, H.1    Keyamura, K.2    Katayama, T.3
  • 9
    • 84857873014 scopus 로고    scopus 로고
    • Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation
    • Ozaki S, Katayama T (2012) Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation. Nucleic Acids Res 40(4):1648-1665.
    • (2012) Nucleic Acids Res , vol.40 , Issue.4 , pp. 1648-1665
    • Ozaki, S.1    Katayama, T.2
  • 10
    • 10944257577 scopus 로고    scopus 로고
    • The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication origin
    • DOI 10.1074/jbc.M409695200
    • Felczak MM, Kaguni JM (2004) The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication origin. J Biol Chem 279 (49):51156-51162. (Pubitemid 40017858)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.49 , pp. 51156-51162
    • Felczak, M.M.1    Kaguni, J.M.2
  • 11
    • 1342324028 scopus 로고    scopus 로고
    • IHF and HU: Flexible architects of bent DNA
    • DOI 10.1016/j.sbi.2003.12.003
    • Swinger KK, Rice PA (2004) IHF and HU: Flexible architects of bent DNA. Curr Opin Struct Biol 14(1):28-35. (Pubitemid 38249589)
    • (2004) Current Opinion in Structural Biology , vol.14 , Issue.1 , pp. 28-35
    • Swinger, K.K.1    Rice, P.A.2
  • 12
    • 0026463867 scopus 로고
    • Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF
    • Hwang DS, Kornberg A (1992) Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. J Biol Chem 267(32):23083-23086.
    • (1992) J Biol Chem , vol.267 , Issue.32 , pp. 23083-23086
    • Hwang, D.S.1    Kornberg, A.2
  • 13
    • 0033975575 scopus 로고    scopus 로고
    • IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli
    • DOI 10.1046/j.1365-2958.2000.01755.x
    • Grimwade JE, Ryan VT, Leonard AC (2000) IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli. Mol Microbiol 35(4):835-844. (Pubitemid 30107534)
    • (2000) Molecular Microbiology , vol.35 , Issue.4 , pp. 835-844
    • Grimwade, J.E.1    Ryan, V.T.2    Leonard, A.C.3
  • 14
    • 0028867701 scopus 로고
    • Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin
    • Cassler MR, Grimwade JE, Leonard AC (1995) Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin. EMBO J 14(23):5833-5841.
    • (1995) EMBO J , vol.14 , Issue.23 , pp. 5833-5841
    • Cassler, M.R.1    Grimwade, J.E.2    Leonard, A.C.3
  • 15
    • 64749105626 scopus 로고    scopus 로고
    • The Escherichia coli SeqA protein
    • Waldminghaus T, Skarstad K (2009) The Escherichia coli SeqA protein. Plasmid 61(3):141-150.
    • (2009) Plasmid , vol.61 , Issue.3 , pp. 141-150
    • Waldminghaus, T.1    Skarstad, K.2
  • 16
    • 0033485526 scopus 로고    scopus 로고
    • Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli
    • Kurokawa K, Nishida S, Emoto A, Sekimizu K, Katayama T (1999) Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli. EMBO J 18(23):6642-6652.
    • (1999) EMBO J , vol.18 , Issue.23 , pp. 6642-6652
    • Kurokawa, K.1    Nishida, S.2    Emoto, A.3    Sekimizu, K.4    Katayama, T.5
  • 17
    • 0035422651 scopus 로고    scopus 로고
    • Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli
    • DOI 10.1093/emboj/20.15.4253
    • Kato J, Katayama T (2001) Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J 20(15):4253-4262. (Pubitemid 32751841)
    • (2001) EMBO Journal , vol.20 , Issue.15 , pp. 4253-4262
    • Kato, J.-I.1    Katayama, T.2
  • 18
    • 77951150088 scopus 로고    scopus 로고
    • Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: Unique roles for Hda AAA Box VI and VII motifs
    • Nakamura K, Katayama T (2010) Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs. Mol Microbiol 76(2):302-317.
    • (2010) Mol Microbiol , vol.76 , Issue.2 , pp. 302-317
    • Nakamura, K.1    Katayama, T.2
  • 19
    • 23644456331 scopus 로고    scopus 로고
    • Coordinated replication and sequestration of oriC and dnaA are required for maintaining controlled once-per-cell-cycle initiation in Escherichia coli
    • DOI 10.1128/JB.187.16.5605-5613.2005
    • Riber L, Løbner-Olesen A (2005) Coordinated replication and sequestration of oriC and dnaA are required for maintaining controlled once-per-cell-cycle initiation in Escherichia coli. J Bacteriol 187(16):5605-5613. (Pubitemid 41134295)
    • (2005) Journal of Bacteriology , vol.187 , Issue.16 , pp. 5605-5613
    • Riber, L.1    Lobner-Olesen, A.2
  • 20
    • 0033229814 scopus 로고    scopus 로고
    • ATP- and ADP-DnaA protein, a molecular switch in gene regulation
    • DOI 10.1093/emboj/18.21.6169
    • Speck C, Weigel C, Messer W (1999) ATP- and ADP-dnaA protein, a molecular switch in gene regulation. EMBO J 18(21):6169-6176. (Pubitemid 29515691)
    • (1999) EMBO Journal , vol.18 , Issue.21 , pp. 6169-6176
    • Speck, C.1    Weigel, C.2    Messer, W.3
  • 21
    • 0942290452 scopus 로고    scopus 로고
    • Hyperinitiation of DNA replication in Escherichia coli leads to replication fork collapse and inviability
    • DOI 10.1046/j.1365-2958.2003.03842.x
    • Simmons LA, Breier AM, Cozzarelli NR, Kaguni JM (2004) Hyperinitiation of DNA replication in Escherichia coli leads to replication fork collapse and inviability. Mol Microbiol 51(2):349-358. (Pubitemid 38142125)
    • (2004) Molecular Microbiology , vol.51 , Issue.2 , pp. 349-358
    • Simmons, L.A.1    Breier, A.M.2    Cozzarelli, N.R.3    Kaguni, J.M.4
  • 22
    • 0030003443 scopus 로고    scopus 로고
    • A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome
    • Kitagawa R, Mitsuki H, Okazaki T, Ogawa T (1996) A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome. Mol Microbiol 19(5):1137-1147.
    • (1996) Mol Microbiol , vol.19 , Issue.5 , pp. 1137-1147
    • Kitagawa, R.1    Mitsuki, H.2    Okazaki, T.3    Ogawa, T.4
  • 23
    • 0032190630 scopus 로고    scopus 로고
    • Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein
    • Kitagawa R, Ozaki T, Moriya S, Ogawa T (1998) Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein. Genes Dev 12(19):3032-3043. (Pubitemid 28469305)
    • (1998) Genes and Development , vol.12 , Issue.19 , pp. 3032-3043
    • Kitagawa, R.1    Ozaki, T.2    Moriya, S.3    Ogawa, T.4
  • 24
    • 0036015656 scopus 로고    scopus 로고
    • The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli
    • DOI 10.1046/j.1365-2958.2002.02969.x
    • Ogawa T, Yamada Y, Kuroda T, Kishi T, Moriya S (2002) The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli. Mol Microbiol 44(5):1367-1375. (Pubitemid 34595766)
    • (2002) Molecular Microbiology , vol.44 , Issue.5 , pp. 1367-1375
    • Ogawa, T.1    Yamada, Y.2    Kuroda, T.3    Kishi, T.4    Moriya, S.5
  • 25
    • 61349133630 scopus 로고    scopus 로고
    • Initiator titration complex formed at datA with the aid of IHF regulates replication timing in Escherichia coli
    • Nozaki S, Yamada Y, Ogawa T (2009) Initiator titration complex formed at datA with the aid of IHF regulates replication timing in Escherichia coli. Genes Cells 14(3):329-341.
    • (2009) Genes Cells , vol.14 , Issue.3 , pp. 329-341
    • Nozaki, S.1    Yamada, Y.2    Ogawa, T.3
  • 26
    • 20444496103 scopus 로고    scopus 로고
    • Deletion of the datA site does not affect once-per-cell-cycle timing but induces rifampin-resistant replication
    • Morigen, Molina F, Skarstad K (2005) Deletion of the datA site does not affect once-per-cell-cycle timing but induces rifampin-resistant replication. J Bacteriol 187(12):3913-3920.
    • (2005) J Bacteriol , vol.187 , Issue.12 , pp. 3913-3920
    • Morigen1    Molina, F.2    Skarstad, K.3
  • 27
    • 0033817863 scopus 로고    scopus 로고
    • Rifampicin-resistant initiation of chromosome replication from oriC in ihf mutants
    • Von Freiesleben U, Rasmussen KV, Atlung T, Hansen FG (2000) Rifampicin-resistant initiation of chromosome replication from oriC in ihf mutants. Mol Microbiol 37(5):1087-1093.
    • (2000) Mol Microbiol , vol.37 , Issue.5 , pp. 1087-1093
    • Von Freiesleben, U.1    Rasmussen, K.V.2    Atlung, T.3    Hansen, F.G.4
  • 29
    • 84855259882 scopus 로고    scopus 로고
    • Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis
    • Okumura H, et al. (2012) Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis. Nucleic Acids Res 40(1):220-234.
    • (2012) Nucleic Acids Res , vol.40 , Issue.1 , pp. 220-234
    • Okumura, H.1
  • 30
    • 0023658349 scopus 로고
    • ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome
    • Sekimizu K, Bramhill D, Kornberg A (1987) ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome. Cell 50(2):259-265.
    • (1987) Cell , vol.50 , Issue.2 , pp. 259-265
    • Sekimizu, K.1    Bramhill, D.2    Kornberg, A.3
  • 31
    • 66149097454 scopus 로고    scopus 로고
    • Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA
    • Fujimitsu K, Senriuchi T, Katayama T (2009) Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA. Genes Dev 23(10):1221-1233.
    • (2009) Genes Dev , vol.23 , Issue.10 , pp. 1221-1233
    • Fujimitsu, K.1    Senriuchi, T.2    Katayama, T.3
  • 32
    • 33746860263 scopus 로고    scopus 로고
    • Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling
    • DOI 10.1038/nsmb1115, PII NSMB1115
    • Erzberger JP, Mott ML, Berger JM (2006) Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling. Nat Struct Mol Biol 13(8):676-683. (Pubitemid 44175159)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.8 , pp. 676-683
    • Erzberger, J.P.1    Mott, M.L.2    Berger, J.M.3
  • 33
    • 43749087597 scopus 로고    scopus 로고
    • A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin
    • Ozaki S, et al. (2008) A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin. J Biol Chem 283(13):8351-8362.
    • (2008) J Biol Chem , vol.283 , Issue.13 , pp. 8351-8362
    • Ozaki, S.1
  • 34
    • 0034016324 scopus 로고    scopus 로고
    • Analysis of the DNA-binding domain of Escherichia coli DnaA protein
    • DOI 10.1046/j.1365-2958.2000.01881.x
    • Blaesing F, Weigel C, Welzeck M, Messer W (2000) Analysis of the DNA-binding domain of Escherichia coli DnaA protein. Mol Microbiol 36(3):557-569. (Pubitemid 30258841)
    • (2000) Molecular Microbiology , vol.36 , Issue.3 , pp. 557-569
    • Blaesing, F.1    Weigel, C.2    Welzeck, M.3    Messer, W.4
  • 35
    • 33847709921 scopus 로고    scopus 로고
    • Sequence characteristics required for cooperative binding and efficient in vivo titration of the replication initiator protein DnaA in E. coli
    • Hansen FG, Christensen BB, Atlung T (2007) Sequence characteristics required for cooperative binding and efficient in vivo titration of the replication initiator protein DnaA in E. coli. J Mol Biol 367(4):942-952.
    • (2007) J Mol Biol , vol.367 , Issue.4 , pp. 942-952
    • Hansen, F.G.1    Christensen, B.B.2    Atlung, T.3
  • 36
    • 33644861714 scopus 로고    scopus 로고
    • A novel regulatory mechanism couples deoxyribonucleotide synthesis and DNA replication in Escherichia coli
    • DOI 10.1038/sj.emboj.7600990, PII 7600990
    • Gon S, et al. (2006) A novel regulatory mechanism couples deoxyribonucleotide synthesis and DNA replication in Escherichia coli. EMBO J 25(5):1137-1147. (Pubitemid 43372126)
    • (2006) EMBO Journal , vol.25 , Issue.5 , pp. 1137-1147
    • Gon, S.1    Camara, J.E.2    Klungsoyr, H.K.3    Crooke, E.4    Skarstad, K.5    Beckwith, J.6
  • 37
    • 0035111073 scopus 로고    scopus 로고
    • Multiple pathways regulating DnaA function in Escherichia coli: Distinct roles for DnaA titration by the datA locus and the regulatory inactivation of DnaA
    • DOI 10.1016/S0300-9084(00)01206-2
    • Katayama T, Fujimitsu K, Ogawa T (2001) Multiple pathways regulating DnaA function in Escherichia coli : Distinct roles for DnaA titration by the datA locus and the regulatory inactivation of DnaA. Biochimie 83(1):13-17. (Pubitemid 32181518)
    • (2001) Biochimie , vol.83 , Issue.1 , pp. 13-17
    • Katayama, T.1    Fujimitsu, K.2    Ogawa, T.3
  • 38
    • 0030737725 scopus 로고    scopus 로고
    • Stable DNA replication: Interplay between DNA replication, homologous recombination, and transcription
    • Kogoma T (1997) Stable DNA replication: Interplay between DNA replication, homologous recombination, and transcription. Microbiol Mol Biol Rev 61(2):212-238.
    • (1997) Microbiol Mol Biol Rev , vol.61 , Issue.2 , pp. 212-238
    • Kogoma, T.1
  • 39
    • 33750000118 scopus 로고    scopus 로고
    • Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome
    • DOI 10.1093/nar/gkl542
    • Grainger DC, Hurd D, Goldberg MD, Busby SJ (2006) Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res 34(16):4642-4652. (Pubitemid 44567058)
    • (2006) Nucleic Acids Research , vol.34 , Issue.16 , pp. 4642-4652
    • Grainger, D.C.1    Hurd, D.2    Goldberg, M.D.3    Busby, S.J.W.4
  • 40
    • 44849093465 scopus 로고    scopus 로고
    • Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
    • DOI 10.1101/gr.070276.107
    • Cho BK, Knight EM, Barrett CL, Palsson BO (2008) Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. Genome Res 18(6):900-910. (Pubitemid 351793062)
    • (2008) Genome Research , vol.18 , Issue.6 , pp. 900-910
    • Cho, B.-K.1    Knight, E.M.2    Barrett, C.L.3    Palsson, B.O.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.