메뉴 건너뛰기




Volumn 11, Issue 1, 2015, Pages

The Global Regulatory Architecture of Transcription during the Caulobacter Cell Cycle

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; METHYLTRANSFERASE; PROTEIN BINDING;

EID: 84924366615     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004831     Document Type: Article
Times cited : (101)

References (83)
  • 1
    • 71149092673 scopus 로고    scopus 로고
    • System-level design of bacterial cell cycle control
    • McAdams HH, Shapiro L, (2009) System-level design of bacterial cell cycle control. FEBS Lett 583: 3984–3991.
    • (2009) FEBS Lett , vol.583 , pp. 3984-3991
    • McAdams, H.H.1    Shapiro, L.2
  • 2
    • 79955619140 scopus 로고    scopus 로고
    • The architecture and conservation pattern of whole-cell control circuitry
    • McAdams HH, Shapiro L, (2011) The architecture and conservation pattern of whole-cell control circuitry. J Mol Biol 409: 28–35.
    • (2011) J Mol Biol , vol.409 , pp. 28-35
    • McAdams, H.H.1    Shapiro, L.2
  • 3
    • 84859007974 scopus 로고    scopus 로고
    • Regulation of chromosomal replication in Caulobacter crescentus
    • Collier J, (2012) Regulation of chromosomal replication in Caulobacter crescentus. Plasmid 67: 76–87.
    • (2012) Plasmid , vol.67 , pp. 76-87
    • Collier, J.1
  • 4
    • 0141868933 scopus 로고    scopus 로고
    • A bacterial cell-cycle regulatory network operating in time and space
    • McAdams HH, Shapiro L, (2003) A bacterial cell-cycle regulatory network operating in time and space. Science 301: 1874–1877.
    • (2003) Science , vol.301 , pp. 1874-1877
    • McAdams, H.H.1    Shapiro, L.2
  • 6
    • 71549140634 scopus 로고    scopus 로고
    • Spatial regulation in Caulobacter crescentus
    • Thanbichler M, (2009) Spatial regulation in Caulobacter crescentus. Curr Opin Microbiol 12: 715–721.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 715-721
    • Thanbichler, M.1
  • 7
    • 77955495922 scopus 로고    scopus 로고
    • A cell-type-specific protein-protein interaction modulates transcriptional activity of a master regulator in Caulobacter crescentus
    • Gora KG, Tsokos CG, Chen YE, Srinivasan BS, Perchuk BS, et al. (2010) A cell-type-specific protein-protein interaction modulates transcriptional activity of a master regulator in Caulobacter crescentus. Mol Cell 39: 455–467.
    • (2010) Mol Cell , vol.39 , pp. 455-467
    • Gora, K.G.1    Tsokos, C.G.2    Chen, Y.E.3    Srinivasan, B.S.4    Perchuk, B.S.5
  • 8
    • 78650495029 scopus 로고    scopus 로고
    • An essential transcription factor, SciP, enhances robustness of Caulobacter cell cycle regulation
    • Tan MH, Kozdon JB, Shen X, Shapiro L, McAdams HH, (2010) An essential transcription factor, SciP, enhances robustness of Caulobacter cell cycle regulation. Proc Natl Acad Sci U S A 107: 18985–18990.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 18985-18990
    • Tan, M.H.1    Kozdon, J.B.2    Shen, X.3    Shapiro, L.4    McAdams, H.H.5
  • 9
    • 2342476606 scopus 로고    scopus 로고
    • Oscillating global regulators control the genetic circuit driving a bacterial cell cycle
    • Holtzendorff J, Hung D, Brende P, Reisenauer A, Viollier PH, et al. (2004) Oscillating global regulators control the genetic circuit driving a bacterial cell cycle. Science 304: 983–987.
    • (2004) Science , vol.304 , pp. 983-987
    • Holtzendorff, J.1    Hung, D.2    Brende, P.3    Reisenauer, A.4    Viollier, P.H.5
  • 10
    • 28244473355 scopus 로고    scopus 로고
    • DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus
    • Hottes AK, Shapiro L, McAdams HH, (2005) DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus. Mol Microbiol 58: 1340–1353.
    • (2005) Mol Microbiol , vol.58 , pp. 1340-1353
    • Hottes, A.K.1    Shapiro, L.2    McAdams, H.H.3
  • 11
    • 0034671792 scopus 로고    scopus 로고
    • Global analysis of the genetic network controlling a bacterial cell cycle
    • Laub MT, McAdams HH, Feldblyum T, Fraser CM, Shapiro L, (2000) Global analysis of the genetic network controlling a bacterial cell cycle. Science 290: 2144–2148.
    • (2000) Science , vol.290 , pp. 2144-2148
    • Laub, M.T.1    McAdams, H.H.2    Feldblyum, T.3    Fraser, C.M.4    Shapiro, L.5
  • 12
    • 0037007079 scopus 로고    scopus 로고
    • Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle
    • Laub MT, Chen SL, Shapiro L, McAdams HH, (2002) Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle. Proc Natl Acad Sci U S A 99: 4632–4637.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 4632-4637
    • Laub, M.T.1    Chen, S.L.2    Shapiro, L.3    McAdams, H.H.4
  • 13
    • 84905454831 scopus 로고    scopus 로고
    • The coding and noncoding architecture of the Caulobacter crescentus genome
    • Schrader JM, Zhou B, Li GW, Lasker K, Childers WS, et al. (2014) The coding and noncoding architecture of the Caulobacter crescentus genome. PLoS Genet 10: e1004463.
    • (2014) PLoS Genet , vol.10 , pp. e1004463
    • Schrader, J.M.1    Zhou, B.2    Li, G.W.3    Lasker, K.4    Childers, W.S.5
  • 15
    • 77954419450 scopus 로고    scopus 로고
    • The genetic basis of laboratory adaptation in Caulobacter crescentus
    • Marks ME, Castro-Rojas CM, Teiling C, Du L, Kapatral V, et al. (2010) The genetic basis of laboratory adaptation in Caulobacter crescentus. J Bacteriol 192: 3678–3688.
    • (2010) J Bacteriol , vol.192 , pp. 3678-3688
    • Marks, M.E.1    Castro-Rojas, C.M.2    Teiling, C.3    Du, L.4    Kapatral, V.5
  • 16
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 17
    • 84860715141 scopus 로고    scopus 로고
    • Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
    • Wurtzel O, Sesto N, Mellin JR, Karunker I, Edelheit S, et al. (2012) Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol Syst Biol 8: 583.
    • (2012) Mol Syst Biol , vol.8 , pp. 583
    • Wurtzel, O.1    Sesto, N.2    Mellin, J.R.3    Karunker, I.4    Edelheit, S.5
  • 18
    • 70449370314 scopus 로고    scopus 로고
    • The transcription unit architecture of the Escherichia coli genome
    • Cho BK, Zengler K, Qiu Y, Park YS, Knight EM, et al. (2009) The transcription unit architecture of the Escherichia coli genome. Nat Biotechnol 27: 1043–1049.
    • (2009) Nat Biotechnol , vol.27 , pp. 1043-1049
    • Cho, B.K.1    Zengler, K.2    Qiu, Y.3    Park, Y.S.4    Knight, E.M.5
  • 19
    • 0018125212 scopus 로고
    • Reactions at the termini of tRNA with T4 RNA ligase
    • Bruce AG, Uhlenbeck OC, (1978) Reactions at the termini of tRNA with T4 RNA ligase. Nucleic Acids Res 5: 3665–3677.
    • (1978) Nucleic Acids Res , vol.5 , pp. 3665-3677
    • Bruce, A.G.1    Uhlenbeck, O.C.2
  • 20
    • 0028799987 scopus 로고
    • Principal sigma subunit of the Caulobacter crescentus RNA polymerase
    • Malakooti J, Ely B, (1995) Principal sigma subunit of the Caulobacter crescentus RNA polymerase. J Bacteriol 177: 6854–6860.
    • (1995) J Bacteriol , vol.177 , pp. 6854-6860
    • Malakooti, J.1    Ely, B.2
  • 21
    • 84898734340 scopus 로고    scopus 로고
    • Correction of the Caulobacter crescentus NA1000 genome annotation
    • Ely B, Scott LE, (2014) Correction of the Caulobacter crescentus NA1000 genome annotation. PLoS One 9: e91668.
    • (2014) PLoS One , vol.9 , pp. e91668
    • Ely, B.1    Scott, L.E.2
  • 23
    • 0028908039 scopus 로고
    • Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex
    • Liu B, Alberts BM, (1995) Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex. Science 267: 1131–1137.
    • (1995) Science , vol.267 , pp. 1131-1137
    • Liu, B.1    Alberts, B.M.2
  • 24
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9: 3273–3297.
    • (1998) Mol Biol Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1    Sherlock, G.2    Zhang, M.Q.3    Iyer, V.R.4    Anders, K.5
  • 25
    • 34249708917 scopus 로고    scopus 로고
    • High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons
    • McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, et al. (2007) High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. Nat Biotechnol 25: 584–592.
    • (2007) Nat Biotechnol , vol.25 , pp. 584-592
    • McGrath, P.T.1    Lee, H.2    Zhang, L.3    Iniesta, A.A.4    Hottes, A.K.5
  • 26
    • 84892700942 scopus 로고    scopus 로고
    • Computational and genetic reduction of a cell cycle to its simplest, primordial components
    • Murray SM, Panis G, Fumeaux C, Viollier PH, Howard M, (2013) Computational and genetic reduction of a cell cycle to its simplest, primordial components. PLoS Biol 11: e1001749.
    • (2013) PLoS Biol , vol.11 , pp. e1001749
    • Murray, S.M.1    Panis, G.2    Fumeaux, C.3    Viollier, P.H.4    Howard, M.5
  • 27
    • 36148983428 scopus 로고    scopus 로고
    • The ECF sigma factor sigma(T) is involved in osmotic and oxidative stress responses in Caulobacter crescentus
    • Alvarez-Martinez CE, Lourenco RF, Baldini RL, Laub MT, Gomes SL, (2007) The ECF sigma factor sigma(T) is involved in osmotic and oxidative stress responses in Caulobacter crescentus. Mol Microbiol 66: 1240–1255.
    • (2007) Mol Microbiol , vol.66 , pp. 1240-1255
    • Alvarez-Martinez, C.E.1    Lourenco, R.F.2    Baldini, R.L.3    Laub, M.T.4    Gomes, S.L.5
  • 28
    • 33645069413 scopus 로고    scopus 로고
    • A phosphorelay system controls stalk biogenesis during cell cycle progression in Caulobacter crescentus
    • Biondi EG, Skerker JM, Arif M, Prasol MS, Perchuk BS, et al. (2006) A phosphorelay system controls stalk biogenesis during cell cycle progression in Caulobacter crescentus. Mol Microbiol 59: 386–401.
    • (2006) Mol Microbiol , vol.59 , pp. 386-401
    • Biondi, E.G.1    Skerker, J.M.2    Arif, M.3    Prasol, M.S.4    Perchuk, B.S.5
  • 29
    • 0027050868 scopus 로고
    • A temporally controlled sigma-factor is required for polar morphogenesis and normal cell division in Caulobacter
    • Brun YV, Shapiro L, (1992) A temporally controlled sigma-factor is required for polar morphogenesis and normal cell division in Caulobacter. Genes Dev 6: 2395–2408.
    • (1992) Genes Dev , vol.6 , pp. 2395-2408
    • Brun, Y.V.1    Shapiro, L.2
  • 30
    • 0028990226 scopus 로고
    • Global regulation of a sigma 54-dependent flagellar gene family in Caulobacter crescentus by the transcriptional activator FlbD
    • Wu J, Benson AK, Newton A, (1995) Global regulation of a sigma 54-dependent flagellar gene family in Caulobacter crescentus by the transcriptional activator FlbD. J Bacteriol 177: 3241–3250.
    • (1995) J Bacteriol , vol.177 , pp. 3241-3250
    • Wu, J.1    Benson, A.K.2    Newton, A.3
  • 31
    • 84893718170 scopus 로고    scopus 로고
    • A cell cycle and nutritional checkpoint controlling bacterial surface adhesion
    • Fiebig A, Herrou J, Fumeaux C, Radhakrishnan SK, Viollier PH, et al. (2014) A cell cycle and nutritional checkpoint controlling bacterial surface adhesion. PLoS Genet 10: e1004101.
    • (2014) PLoS Genet , vol.10 , pp. e1004101
    • Fiebig, A.1    Herrou, J.2    Fumeaux, C.3    Radhakrishnan, S.K.4    Viollier, P.H.5
  • 32
    • 0033536009 scopus 로고    scopus 로고
    • Feedback control of a master bacterial cell-cycle regulator
    • Domian IJ, Reisenauer A, Shapiro L, (1999) Feedback control of a master bacterial cell-cycle regulator. Proc Natl Acad Sci U S A 96: 6648–6653.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 6648-6653
    • Domian, I.J.1    Reisenauer, A.2    Shapiro, L.3
  • 33
    • 84902772915 scopus 로고    scopus 로고
    • Fumeaux C, Radhakrishnan SK, Ardissone S, Theraulaz L, Frandi A, et al. (2014) Cell cycle transition from S-phase to G1 in Caulobacter is mediated by ancestral virulence regulators. Nat Commun 10.1038/ncomms5081.
  • 34
    • 31444446780 scopus 로고    scopus 로고
    • DnaA couples DNA replication and the expression of two cell cycle master regulators
    • Collier J, Murray SR, Shapiro L, (2006) DnaA couples DNA replication and the expression of two cell cycle master regulators. EMBO J 25: 346–356.
    • (2006) EMBO J , vol.25 , pp. 346-356
    • Collier, J.1    Murray, S.R.2    Shapiro, L.3
  • 35
    • 84888313076 scopus 로고    scopus 로고
    • Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle
    • Kozdon JB, Melfi MD, Luong K, Clark TA, Boitano M, et al. (2013) Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle. Proc Natl Acad Sci U S A 110: E4658–4667.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 4658-4667
    • Kozdon, J.B.1    Melfi, M.D.2    Luong, K.3    Clark, T.A.4    Boitano, M.5
  • 36
    • 0032539827 scopus 로고    scopus 로고
    • A cell cycle-regulated adenine DNA methyltransferase from Caulobacter crescentus processively methylates GANTC sites on hemimethylated DNA
    • Berdis AJ, Lee I, Coward JK, Stephens C, Wright R, et al. (1998) A cell cycle-regulated adenine DNA methyltransferase from Caulobacter crescentus processively methylates GANTC sites on hemimethylated DNA. Proc Natl Acad Sci U S A 95: 2874–2879.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 2874-2879
    • Berdis, A.J.1    Lee, I.2    Coward, J.K.3    Stephens, C.4    Wright, R.5
  • 37
    • 0037119976 scopus 로고    scopus 로고
    • DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter
    • Reisenauer A, Shapiro L, (2002) DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter. EMBO J 21: 4969–4977.
    • (2002) EMBO J , vol.21 , pp. 4969-4977
    • Reisenauer, A.1    Shapiro, L.2
  • 38
    • 36749067835 scopus 로고    scopus 로고
    • A DNA methylation ratchet governs progression through a bacterial cell cycle
    • Collier J, McAdams HH, Shapiro L, (2007) A DNA methylation ratchet governs progression through a bacterial cell cycle. Proc Natl Acad Sci U S A 104: 17111–17116.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 17111-17116
    • Collier, J.1    McAdams, H.H.2    Shapiro, L.3
  • 40
    • 77949425194 scopus 로고    scopus 로고
    • The primary transcriptome of the major human pathogen Helicobacter pylori
    • Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250–255.
    • (2010) Nature , vol.464 , pp. 250-255
    • Sharma, C.M.1    Hoffmann, S.2    Darfeuille, F.3    Reignier, J.4    Findeiss, S.5
  • 41
    • 84865728811 scopus 로고    scopus 로고
    • Antisense transcription is pervasive but rarely conserved in enteric bacteria
    • Raghavan R, Sloan DB, Ochman H (2012) Antisense transcription is pervasive but rarely conserved in enteric bacteria. mBio 10.1128/mBio.00156–12.
    • (2012)
    • Raghavan, R.1    Sloan, D.B.2    Ochman, H.3
  • 42
    • 78449301921 scopus 로고    scopus 로고
    • Dornenburg JE, Devita AM, Palumbo MJ, Wade JT (2010) Widespread antisense transcription in Escherichia coli. mBio 10.1128/mBio.00024–10.
  • 43
    • 70849119931 scopus 로고    scopus 로고
    • Transcriptome complexity in a genome-reduced bacterium
    • Guell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, et al. (2009) Transcriptome complexity in a genome-reduced bacterium. Science 326: 1268–1271.
    • (2009) Science , vol.326 , pp. 1268-1271
    • Guell, M.1    van Noort, V.2    Yus, E.3    Chen, W.H.4    Leigh-Bell, J.5
  • 44
    • 38349059057 scopus 로고    scopus 로고
    • The dynamic interplay between a cell fate determinant and a lysozyme homolog drives the asymmetric division cycle of Caulobacter crescentus
    • Radhakrishnan SK, Thanbichler M, Viollier PH, (2008) The dynamic interplay between a cell fate determinant and a lysozyme homolog drives the asymmetric division cycle of Caulobacter crescentus. Genes Dev 22: 212–225.
    • (2008) Genes Dev , vol.22 , pp. 212-225
    • Radhakrishnan, S.K.1    Thanbichler, M.2    Viollier, P.H.3
  • 45
    • 79151470965 scopus 로고    scopus 로고
    • RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA
    • Opdyke JA, Fozo EM, Hemm MR, Storz G, (2011) RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA. J Mol Biol 406: 29–43.
    • (2011) J Mol Biol , vol.406 , pp. 29-43
    • Opdyke, J.A.1    Fozo, E.M.2    Hemm, M.R.3    Storz, G.4
  • 47
    • 0037336119 scopus 로고    scopus 로고
    • tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation
    • Keiler KC, Shapiro L, (2003) tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation. J Bacteriol 185: 1825–1830.
    • (2003) J Bacteriol , vol.185 , pp. 1825-1830
    • Keiler, K.C.1    Shapiro, L.2
  • 48
    • 0032933912 scopus 로고    scopus 로고
    • Identification and transcriptional control of the genes encoding the Caulobacter crescentus ClpXP protease
    • Osteras M, Stotz A, Schmid Nuoffer S, Jenal U, (1999) Identification and transcriptional control of the genes encoding the Caulobacter crescentus ClpXP protease. J Bacteriol 181: 3039–3050.
    • (1999) J Bacteriol , vol.181 , pp. 3039-3050
    • Osteras, M.1    Stotz, A.2    Schmid Nuoffer, S.3    Jenal, U.4
  • 49
    • 0030938152 scopus 로고    scopus 로고
    • Transcription of genes encoding DNA replication proteins is coincident with cell cycle control of DNA replication in Caulobacter crescentus
    • Roberts RC, Shapiro L, (1997) Transcription of genes encoding DNA replication proteins is coincident with cell cycle control of DNA replication in Caulobacter crescentus. J Bacteriol 179: 2319–2330.
    • (1997) J Bacteriol , vol.179 , pp. 2319-2330
    • Roberts, R.C.1    Shapiro, L.2
  • 50
    • 0037108973 scopus 로고    scopus 로고
    • Identification of a localization factor for the polar positioning of bacterial structural and regulatory proteins
    • Viollier PH, Sternheim N, Shapiro L, (2002) Identification of a localization factor for the polar positioning of bacterial structural and regulatory proteins. Proc Natl Acad Sci U S A 99: 13831–13836.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 13831-13836
    • Viollier, P.H.1    Sternheim, N.2    Shapiro, L.3
  • 51
    • 0037329155 scopus 로고    scopus 로고
    • The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator
    • Hinz AJ, Larson DE, Smith CS, Brun YV, (2003) The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator. Mol Microbiol 47: 929–941.
    • (2003) Mol Microbiol , vol.47 , pp. 929-941
    • Hinz, A.J.1    Larson, D.E.2    Smith, C.S.3    Brun, Y.V.4
  • 52
    • 33745699284 scopus 로고    scopus 로고
    • MipZ, a spatial regulator coordinating chromosome segregation with cell division in Caulobacter
    • Thanbichler M, Shapiro L, (2006) MipZ, a spatial regulator coordinating chromosome segregation with cell division in Caulobacter. Cell 126: 147–162.
    • (2006) Cell , vol.126 , pp. 147-162
    • Thanbichler, M.1    Shapiro, L.2
  • 53
    • 84879809209 scopus 로고    scopus 로고
    • Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution
    • Fang G, Passalacqua KD, Hocking J, Llopis PM, Gerstein M, et al. (2013) Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution. BMC Genomics 14: 450.
    • (2013) BMC Genomics , vol.14 , pp. 450
    • Fang, G.1    Passalacqua, K.D.2    Hocking, J.3    Llopis, P.M.4    Gerstein, M.5
  • 54
    • 33646471951 scopus 로고    scopus 로고
    • An internal antisense RNA regulates expression of the photosynthesis gene isiA
    • Duhring U, Axmann IM, Hess WR, Wilde A, (2006) An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci U S A 103: 7054–7058.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 7054-7058
    • Duhring, U.1    Axmann, I.M.2    Hess, W.R.3    Wilde, A.4
  • 55
    • 34247489752 scopus 로고    scopus 로고
    • An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin
    • Kawano M, Aravind L, Storz G, (2007) An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin. Mol Microbiol 64: 738–754.
    • (2007) Mol Microbiol , vol.64 , pp. 738-754
    • Kawano, M.1    Aravind, L.2    Storz, G.3
  • 56
    • 77952128269 scopus 로고    scopus 로고
    • An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
    • Lee EJ, Groisman EA, (2010) An antisense RNA that governs the expression kinetics of a multifunctional virulence gene. Mol Microbiol 76: 1020–1033.
    • (2010) Mol Microbiol , vol.76 , pp. 1020-1033
    • Lee, E.J.1    Groisman, E.A.2
  • 57
    • 34247560793 scopus 로고    scopus 로고
    • Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA
    • Stork M, Di Lorenzo M, Welch TJ, Crosa JH, (2007) Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA. J Bacteriol 189: 3479–3488.
    • (2007) J Bacteriol , vol.189 , pp. 3479-3488
    • Stork, M.1    Di Lorenzo, M.2    Welch, T.J.3    Crosa, J.H.4
  • 58
    • 84855464046 scopus 로고    scopus 로고
    • A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide
    • Sayed N, Jousselin A, Felden B, (2012) A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide. Nat Struct Mol Biol 19: 105–112.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 105-112
    • Sayed, N.1    Jousselin, A.2    Felden, B.3
  • 59
    • 84874624264 scopus 로고    scopus 로고
    • Global mapping of transcription start sites and promoter motifs in the symbiotic alpha-proteobacterium Sinorhizobium meliloti 1021
    • Schluter JP, Reinkensmeier J, Barnett MJ, Lang C, Krol E, et al. (2013) Global mapping of transcription start sites and promoter motifs in the symbiotic alpha-proteobacterium Sinorhizobium meliloti 1021. BMC Genomics 14: 156.
    • (2013) BMC Genomics , vol.14 , pp. 156
    • Schluter, J.P.1    Reinkensmeier, J.2    Barnett, M.J.3    Lang, C.4    Krol, E.5
  • 60
    • 77951601819 scopus 로고    scopus 로고
    • The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis
    • Brilli M, Fondi M, Fani R, Mengoni A, Ferri L, et al. (2010) The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis. BMC Syst Biol 4: 52.
    • (2010) BMC Syst Biol , vol.4 , pp. 52
    • Brilli, M.1    Fondi, M.2    Fani, R.3    Mengoni, A.4    Ferri, L.5
  • 61
    • 84895790680 scopus 로고    scopus 로고
    • Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti
    • De Nisco NJ, Abo RP, Wu CM, Penterman J, Walker GC, (2014) Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti. Proc Natl Acad Sci U S A 111: 3217–3224.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 3217-3224
    • De Nisco, N.J.1    Abo, R.P.2    Wu, C.M.3    Penterman, J.4    Walker, G.C.5
  • 62
    • 77956542074 scopus 로고    scopus 로고
    • CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus
    • Landt SG, Lesley JA, Britos L, Shapiro L, (2010) CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus. J Bacteriol 192: 4763–4775.
    • (2010) J Bacteriol , vol.192 , pp. 4763-4775
    • Landt, S.G.1    Lesley, J.A.2    Britos, L.3    Shapiro, L.4
  • 63
    • 0037227964 scopus 로고    scopus 로고
    • tmRNA is required for correct timing of DNA replication in Caulobacter crescentus
    • Keiler KC, Shapiro L, (2003) tmRNA is required for correct timing of DNA replication in Caulobacter crescentus. J Bacteriol 185: 573–580.
    • (2003) J Bacteriol , vol.185 , pp. 573-580
    • Keiler, K.C.1    Shapiro, L.2
  • 64
    • 79960433506 scopus 로고    scopus 로고
    • Hfq and its constellation of RNA
    • Vogel J, Luisi BF, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578–589.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 578-589
    • Vogel, J.1    Luisi, B.F.2
  • 65
    • 68949150880 scopus 로고    scopus 로고
    • CtrA, a global response regulator, uses a distinct second category of weak DNA binding sites for cell cycle transcription control in Caulobacter crescentus
    • Spencer W, Siam R, Ouimet MC, Bastedo DP, Marczynski GT, (2009) CtrA, a global response regulator, uses a distinct second category of weak DNA binding sites for cell cycle transcription control in Caulobacter crescentus. J Bacteriol 191: 5458–5470.
    • (2009) J Bacteriol , vol.191 , pp. 5458-5470
    • Spencer, W.1    Siam, R.2    Ouimet, M.C.3    Bastedo, D.P.4    Marczynski, G.T.5
  • 66
    • 84874989869 scopus 로고    scopus 로고
    • Regulated proteolysis of a transcription factor complex is critical to cell cycle progression in Caulobacter crescentus
    • Gora KG, Cantin A, Wohlever M, Joshi KK, Perchuk BS, et al. (2013) Regulated proteolysis of a transcription factor complex is critical to cell cycle progression in Caulobacter crescentus. Mol Microbiol 87: 1277–1289.
    • (2013) Mol Microbiol , vol.87 , pp. 1277-1289
    • Gora, K.G.1    Cantin, A.2    Wohlever, M.3    Joshi, K.K.4    Perchuk, B.S.5
  • 67
    • 80053982917 scopus 로고    scopus 로고
    • The Caulobacter crescentus chromosome replication origin evolved two classes of weak DnaA binding sites
    • Taylor JA, Ouimet MC, Wargachuk R, Marczynski GT, (2011) The Caulobacter crescentus chromosome replication origin evolved two classes of weak DnaA binding sites. Mol Microbiol 82: 312–326.
    • (2011) Mol Microbiol , vol.82 , pp. 312-326
    • Taylor, J.A.1    Ouimet, M.C.2    Wargachuk, R.3    Marczynski, G.T.4
  • 68
    • 84878499327 scopus 로고    scopus 로고
    • DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria
    • Fioravanti A, Fumeaux C, Mohapatra SS, Bompard C, Brilli M, et al. (2013) DNA binding of the cell cycle transcriptional regulator GcrA depends on N6-adenosine methylation in Caulobacter crescentus and other Alphaproteobacteria. PLoS Genet 9: e1003541.
    • (2013) PLoS Genet , vol.9 , pp. e1003541
    • Fioravanti, A.1    Fumeaux, C.2    Mohapatra, S.S.3    Bompard, C.4    Brilli, M.5
  • 69
    • 84899033664 scopus 로고    scopus 로고
    • The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach
    • Gonzalez D, Kozdon JB, McAdams HH, Shapiro L, Collier J, (2014) The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach. Nucleic Acids Res 42: 3720–3735.
    • (2014) Nucleic Acids Res , vol.42 , pp. 3720-3735
    • Gonzalez, D.1    Kozdon, J.B.2    McAdams, H.H.3    Shapiro, L.4    Collier, J.5
  • 70
    • 49649109935 scopus 로고    scopus 로고
    • Architecture and inherent robustness of a bacterial cell-cycle control system
    • Shen X, Collier J, Dill D, Shapiro L, Horowitz M, et al. (2008) Architecture and inherent robustness of a bacterial cell-cycle control system. Proc Natl Acad Sci U S A 105: 11340–11345.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 11340-11345
    • Shen, X.1    Collier, J.2    Dill, D.3    Shapiro, L.4    Horowitz, M.5
  • 71
    • 84893647984 scopus 로고    scopus 로고
    • The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae
    • Wang H, Ziesche L, Frank O, Michael V, Martin M, et al. (2014) The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae. BMC Genomics 15: 130.
    • (2014) BMC Genomics , vol.15 , pp. 130
    • Wang, H.1    Ziesche, L.2    Frank, O.3    Michael, V.4    Martin, M.5
  • 72
    • 84895832065 scopus 로고    scopus 로고
    • Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis
    • Penterman J, Abo RP, De Nisco NJ, Arnold MF, Longhi R, et al. (2014) Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis. Proc Natl Acad Sci U S A 111: 3561–3566.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 3561-3566
    • Penterman, J.1    Abo, R.P.2    De Nisco, N.J.3    Arnold, M.F.4    Longhi, R.5
  • 73
    • 84863994325 scopus 로고    scopus 로고
    • Analysis of the CtrA Pathway in Magnetospirillum Reveals an Ancestral Role in Motility in Alphaproteobacteria
    • Greene SE, Brilli M, Biondi EG, Komeili A, (2012) Analysis of the CtrA Pathway in Magnetospirillum Reveals an Ancestral Role in Motility in Alphaproteobacteria. J Bacteriol 194: 2973–2986.
    • (2012) J Bacteriol , vol.194 , pp. 2973-2986
    • Greene, S.E.1    Brilli, M.2    Biondi, E.G.3    Komeili, A.4
  • 74
    • 84887218625 scopus 로고    scopus 로고
    • Phosphate concentration and the putative sensor kinase protein CckA modulate cell lysis and release of the Rhodobacter capsulatus gene transfer agent
    • Westbye AB, Leung MM, Florizone SM, Taylor TA, Johnson JA, et al. (2013) Phosphate concentration and the putative sensor kinase protein CckA modulate cell lysis and release of the Rhodobacter capsulatus gene transfer agent. J Bacteriol 195: 5025–5040.
    • (2013) J Bacteriol , vol.195 , pp. 5025-5040
    • Westbye, A.B.1    Leung, M.M.2    Florizone, S.M.3    Taylor, T.A.4    Johnson, J.A.5
  • 75
    • 84904185831 scopus 로고    scopus 로고
    • Deghelt M, Mullier C, Sternon JF, Francis N, Laloux G, et al. (2014) G1-arrested newborn cells are the predominant infectious form of the pathogen Brucella abortus. Nat Commun 10.1038/ncomms5366.
  • 76
    • 0034043880 scopus 로고    scopus 로고
    • The Brucella abortus CcrM DNA methyltransferase is essential for viability, and its overexpression attenuates intracellular replication in murine macrophages
    • Robertson G, Reisenauer A, Wright R, Jensen R, Jensen A, et al. (2000) The Brucella abortus CcrM DNA methyltransferase is essential for viability, and its overexpression attenuates intracellular replication in murine macrophages. J Bacteriol 182: 3482–3489.
    • (2000) J Bacteriol , vol.182 , pp. 3482-3489
    • Robertson, G.1    Reisenauer, A.2    Wright, R.3    Jensen, R.4    Jensen, A.5
  • 77
    • 0017740506 scopus 로고
    • Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells
    • Evinger M, Agabian N, (1977) Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells. J Bacteriol 132: 294–301.
    • (1977) J Bacteriol , vol.132 , pp. 294-301
    • Evinger, M.1    Agabian, N.2
  • 78
    • 0025888266 scopus 로고
    • Genetics of Caulobacter crescentus
    • Ely B, (1991) Genetics of Caulobacter crescentus. Methods Enzymol 204: 372–384.
    • (1991) Methods Enzymol , vol.204 , pp. 372-384
    • Ely, B.1
  • 80
    • 79953300078 scopus 로고    scopus 로고
    • FIMO: scanning for occurrences of a given motif
    • Grant CE, Bailey TL, Noble WS, (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics 27: 1017–1018.
    • (2011) Bioinformatics , vol.27 , pp. 1017-1018
    • Grant, C.E.1    Bailey, T.L.2    Noble, W.S.3
  • 82
    • 0031940593 scopus 로고    scopus 로고
    • Negative control of bacterial DNA replication by a cell cycle regulatory protein that binds at the chromosome origin
    • Quon KC, Yang B, Domian IJ, Shapiro L, Marczynski GT, (1998) Negative control of bacterial DNA replication by a cell cycle regulatory protein that binds at the chromosome origin. Proc Natl Acad Sci U S A 95: 120–125.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 120-125
    • Quon, K.C.1    Yang, B.2    Domian, I.J.3    Shapiro, L.4    Marczynski, G.T.5
  • 83
    • 0029015432 scopus 로고
    • A developmentally regulated chromosomal origin of replication uses essential transcription elements
    • Marczynski GT, Lentine K, Shapiro L, (1995) A developmentally regulated chromosomal origin of replication uses essential transcription elements. Genes Dev 9: 1543–1557.
    • (1995) Genes Dev , vol.9 , pp. 1543-1557
    • Marczynski, G.T.1    Lentine, K.2    Shapiro, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.