-
1
-
-
55549132236
-
The "glutamate switch" provides a link between ATPase activity and ligand binding in AAA+proteins
-
Zhang X, Wigley DB. 2008. The "glutamate switch" provides a link between ATPase activity and ligand binding in AAA+proteins. Nat Struct Mol Biol 15:1223-1227. http://dx.doi.org/10.1038/nsmb.1501.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 1223-1227
-
-
Zhang, X.1
Wigley, D.B.2
-
2
-
-
84964068517
-
Biological nanomotors with a revolution, linear, or rotation motion mechanism
-
Guo P, Noji H, Yengo CM, Zhao Z, Grainge I. 2016. Biological nanomotors with a revolution, linear, or rotation motion mechanism. Microbiol Mol Biol Rev 80:161-186. http://dx.doi.org/10.1128/MMBR.00056-15.
-
(2016)
Microbiol Mol Biol Rev
, vol.80
, pp. 161-186
-
-
Guo, P.1
Noji, H.2
Yengo, C.M.3
Zhao, Z.4
Grainge, I.5
-
3
-
-
65149084160
-
The AAA+ superfamily of functionally diverse proteins
-
Snider J, Thibault G, Houry WA. 2008. The AAA+ superfamily of functionally diverse proteins. Genome Biol 9:216. http://dx.doi.org/10.1186/gb-2008-9-4-216.
-
(2008)
Genome Biol
, vol.9
, pp. 216
-
-
Snider, J.1
Thibault, G.2
Houry, W.A.3
-
4
-
-
33749236397
-
Classification of AAA+ proteins
-
Ammelburg M, Frickey T, Lupas AN. 2006. Classification of AAA+ proteins. J Struct Biol 156:2-11. http://dx.doi.org/10.1016/j.jsb.2006.05.002.
-
(2006)
J Struct Biol
, vol.156
, pp. 2-11
-
-
Ammelburg, M.1
Frickey, T.2
Lupas, A.N.3
-
5
-
-
0030896203
-
Sequential action of six virus-encoded DNApackaging RNAs during phage phi29 genomic DNA translocation
-
Chen C, Guo P. 1997. Sequential action of six virus-encoded DNApackaging RNAs during phage phi29 genomic DNA translocation. J Virol 71:3864-3871.
-
(1997)
J Virol
, vol.71
, pp. 3864-3871
-
-
Chen, C.1
Guo, P.2
-
6
-
-
27144474906
-
Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines
-
Martin A, Baker TA, Sauer RT. 2005. Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines. Nature 437:1115-1120. http://dx.doi.org/10.1038/nature04031.
-
(2005)
Nature
, vol.437
, pp. 1115-1120
-
-
Martin, A.1
Baker, T.A.2
Sauer, R.T.3
-
7
-
-
84908135466
-
Two classes of Nucleic acid translocation motors: rotation and revolution without rotation
-
Guo P, Grainge I, Zhao Z, Vieweger M. 2014. Two classes of Nucleic acid translocation motors: rotation and revolution without rotation. Cell Biosci 4:54. http://dx.doi.org/10.1186/2045-3701-4-54.
-
(2014)
Cell Biosci
, vol.4
, pp. 54
-
-
Guo, P.1
Grainge, I.2
Zhao, Z.3
Vieweger, M.4
-
8
-
-
0034711359
-
Powering an inorganic nanodevice with a biomolecular motor
-
Soong RK, Bachand GD, Neves HP, Olkhovets AG, Craighead HG, Montemagno CD. 2000. Powering an inorganic nanodevice with a biomolecular motor. Science 290:1555-1558. http://dx.doi.org/10.1126/science.290.5496.1555.
-
(2000)
Science
, vol.290
, pp. 1555-1558
-
-
Soong, R.K.1
Bachand, G.D.2
Neves, H.P.3
Olkhovets, A.G.4
Craighead, H.G.5
Montemagno, C.D.6
-
9
-
-
84873097195
-
The bacteriophage t7 virion undergoes extensive structural remodeling during infection
-
Hu B, Margolin W, Molineux IJ, Liu J. 2013. The bacteriophage t7 virion undergoes extensive structural remodeling during infection. Science 339: 576-579. http://dx.doi.org/10.1126/science.1231887.
-
(2013)
Science
, vol.339
, pp. 576-579
-
-
Hu, B.1
Margolin, W.2
Molineux, I.J.3
Liu, J.4
-
10
-
-
78049300491
-
FtsK DNA translocase: the fast motor that knows where it's going
-
Crozat E, Grainge I. 2010. FtsK DNA translocase: the fast motor that knows where it's going. Chembiochem 11:2232-2243. http://dx.doi.org/10.1002/cbic.201000347.
-
(2010)
Chembiochem
, vol.11
, pp. 2232-2243
-
-
Crozat, E.1
Grainge, I.2
-
11
-
-
0023660940
-
Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi29
-
Guo P, Peterson C, Anderson D. 1987. Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi29. J Mol Biol 197:229-236. http://dx.doi.org/10.1016/0022-2836(87)90121-5.
-
(1987)
J Mol Biol
, vol.197
, pp. 229-236
-
-
Guo, P.1
Peterson, C.2
Anderson, D.3
-
12
-
-
0020002423
-
E. coli F1-ATPase interacts with a membrane protein component of a proton channel
-
Walker JE, Saraste M, Gay NJ. 1982. E. coli F1-ATPase interacts with a membrane protein component of a proton channel. Nature 298:867-869. http://dx.doi.org/10.1038/298867a0.
-
(1982)
Nature
, vol.298
, pp. 867-869
-
-
Walker, J.E.1
Saraste, M.2
Gay, N.J.3
-
13
-
-
0001607723
-
Distantly related sequences in the alpha-and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker JE, Saraste M, Runswick MJ, Gay NJ. 1982. Distantly related sequences in the alpha-and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945-951.
-
(1982)
EMBO J
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
-
14
-
-
84895852851
-
Multimodal mechanism of action of allosteric HIV-1 integrase inhibitors
-
Jurado KA, Engelman A. 2013. Multimodal mechanism of action of allosteric HIV-1 integrase inhibitors. Expert Rev Mol Med 15:e14. http://dx.doi.org/10.1017/erm.2013.15.
-
(2013)
Expert Rev Mol Med
, vol.15
, pp. e14
-
-
Jurado, K.A.1
Engelman, A.2
-
15
-
-
84878292282
-
Mechanism of one-way traffic of hexameric phi29 DNA packaging motor with four electropositive relaying layers facilitating anti-parallel revolution
-
Zhao Z, Khisamutdinov E, Schwartz C, Guo P. 2013. Mechanism of one-way traffic of hexameric phi29 DNA packaging motor with four electropositive relaying layers facilitating anti-parallel revolution. ACS Nano 7:4082-4092. http://dx.doi.org/10.1021/nn4002775.
-
(2013)
ACS Nano
, vol.7
, pp. 4082-4092
-
-
Zhao, Z.1
Khisamutdinov, E.2
Schwartz, C.3
Guo, P.4
-
16
-
-
84879787373
-
Revolution rather than rotation of AAA+ hexameric phi29 nanomotor for viral dsDNA packaging without coiling
-
Schwartz C, De Donatis GM, Zhang H, Fang H, Guo P. 2013. Revolution rather than rotation of AAA+ hexameric phi29 nanomotor for viral dsDNA packaging without coiling. Virology 443:28-39. http://dx.doi.org/10.1016/j.virol.2013.04.019.
-
(2013)
Virology
, vol.443
, pp. 28-39
-
-
Schwartz, C.1
De Donatis, G.M.2
Zhang, H.3
Fang, H.4
Guo, P.5
-
17
-
-
84879785627
-
The ATPase of the phi29 DNA-packaging motor is a member of the hexameric AAA+superfamily
-
Schwartz C, De Donatis GM, Fang H, Guo P. 2013. The ATPase of the phi29 DNA-packaging motor is a member of the hexameric AAA+superfamily. Virology 443:20-27. http://dx.doi.org/10.1016/j.virol.2013.04.004.
-
(2013)
Virology
, vol.443
, pp. 20-27
-
-
Schwartz, C.1
De Donatis, G.M.2
Fang, H.3
Guo, P.4
-
18
-
-
84902546969
-
Finding of widespread viral and bacterial revolution dsDNA translocation motors distinct from rotation motors by channel chirality and size
-
De-Donatis G, Zhao Z, Wang S, Huang PL, Schwartz C, Tsodikov VO, Zhang H, Haque F, Guo P. 2014. Finding of widespread viral and bacterial revolution dsDNA translocation motors distinct from rotation motors by channel chirality and size. Cell Biosci 4:30. http://dx.doi.org/10.1186/2045-3701-4-30.
-
(2014)
Cell Biosci
, vol.4
, pp. 30
-
-
De-Donatis, G.1
Zhao, Z.2
Wang, S.3
Huang, P.L.4
Schwartz, C.5
Tsodikov, V.O.6
Zhang, H.7
Haque, F.8
Guo, P.9
-
19
-
-
84901951285
-
Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation
-
Guo P, Zhao Z, Haak J, Wang S, Wu D, Meng B, Weitao T. 2014. Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation. Biotechnol Adv 32:853-872. http://dx.doi.org/10.1016/j.biotechadv.2014.01.006.
-
(2014)
Biotechnol Adv
, vol.32
, pp. 853-872
-
-
Guo, P.1
Zhao, Z.2
Haak, J.3
Wang, S.4
Wu, D.5
Meng, B.6
Weitao, T.7
-
20
-
-
0032969563
-
AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald AF, Aravind L, Spouge JL, Koonin EV. 1999. AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 9:27-43. http://dx.doi.org/10.1101/gr.9.1.27.
-
(1999)
Genome Res
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
21
-
-
0033543650
-
Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases. Site-directed mutagenesis of the ATP-dependent protease FtsH
-
Karata K, Inagawa T, Wilkinson AJ, Tatsuta T, Ogura T. 1999. Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases. Site-directed mutagenesis of the ATP-dependent protease FtsH. J Biol Chem 274:26225-26232.
-
(1999)
J Biol Chem
, vol.274
, pp. 26225-26232
-
-
Karata, K.1
Inagawa, T.2
Wilkinson, A.J.3
Tatsuta, T.4
Ogura, T.5
-
22
-
-
84937468649
-
Structure and mechanism of the ATPase that powers viral genome packaging
-
Hilbert BJ, Hayes JA, Stone NP, Duffy CM, Sankaran B, Kelch BA. 2015 Structure and mechanism of the ATPase that powers viral genome packaging. Proc Natl Acad Sci U S A 112:E3792-E3799. http://dx.doi.org/10.1073/pnas.1506951112.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. E3792-E3799
-
-
Hilbert, B.J.1
Hayes, J.A.2
Stone, N.P.3
Duffy, C.M.4
Sankaran, B.5
Kelch, B.A.6
-
23
-
-
41949129077
-
On helicases and other motor proteins
-
Enemark EJ, Joshua-Tor L. 2008. On helicases and other motor proteins. Curr Opin Struct Biol 18:243-257. http://dx.doi.org/10.1016/j.sbi.2008.01.007.
-
(2008)
Curr Opin Struct Biol
, vol.18
, pp. 243-257
-
-
Enemark, E.J.1
Joshua-Tor, L.2
-
24
-
-
5144223072
-
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging
-
Iyer LM, Makarova KS, Koonin EV, Aravind L. 2004. Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging. Nucleic Acids Res 32:5260-5279. http://dx.doi.org/10.1093/nar/gkh828.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5260-5279
-
-
Iyer, L.M.1
Makarova, K.S.2
Koonin, E.V.3
Aravind, L.4
-
25
-
-
84864911724
-
ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA+ transcriptional activator
-
Joly N, Zhang N, Buck M. 2012. ATPase site architecture is required for self-assembly and remodeling activity of a hexameric AAA+ transcriptional activator. Mol Cell 47:484-490. http://dx.doi.org/10.1016/j.molcel.2012.06.012.
-
(2012)
Mol Cell
, vol.47
, pp. 484-490
-
-
Joly, N.1
Zhang, N.2
Buck, M.3
-
26
-
-
84855198520
-
Structure and function of the AAA+ nucleotide binding pocket
-
Wendler P, Ciniawsky S, Kock M, Kube S. 2012. Structure and function of the AAA+ nucleotide binding pocket. Biochim Biophys Acta 1823:2-14 http://dx.doi.org/10.1016/j.bbamcr.2011.06.014.
-
(2012)
Biochim Biophys Acta
, vol.1823
, pp. 2-14
-
-
Wendler, P.1
Ciniawsky, S.2
Kock, M.3
Kube, S.4
-
27
-
-
1642325936
-
Evolutionary history and higher order classification of AAA plus ATPases
-
Iyer LM, Leipe DD, Koonin EV, Aravind L. 2004. Evolutionary history and higher order classification of AAA plus ATPases. J Struct Biol 146:11-31 http://dx.doi.org/10.1016/j.jsb.2003.10.010.
-
(2004)
J Struct Biol
, vol.146
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
28
-
-
84911450146
-
trans-Acting arginine residues in the AAA+ chaperone ClpB allosterically regulate the activity through inter-and intradomain communication
-
Zeymer C, Fischer S, Reinstein J. 2014. trans-Acting arginine residues in the AAA+ chaperone ClpB allosterically regulate the activity through inter-and intradomain communication. J Biol Chem 289:32965-32976. http://dx.doi.org/10.1074/jbc.M114.608828.
-
(2014)
J Biol Chem
, vol.289
, pp. 32965-32976
-
-
Zeymer, C.1
Fischer, S.2
Reinstein, J.3
-
29
-
-
84922476821
-
Key chemical factors of arginine finger catalysis of F1-ATPase clarified by an unnatural amino acid mutation
-
Yukawa A, Iino R, Watanabe R, Hayashi S, Noji H. 2015. Key chemical factors of arginine finger catalysis of F1-ATPase clarified by an unnatural amino acid mutation. Biochemistry 54:472-480. http://dx.doi.org/10.1021/bi501138b.
-
(2015)
Biochemistry
, vol.54
, pp. 472-480
-
-
Yukawa, A.1
Iino, R.2
Watanabe, R.3
Hayashi, S.4
Noji, H.5
-
30
-
-
38349186157
-
Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype
-
Elles LM, Uhlenbeck OC. 2008. Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype. Nucleic Acids Res 36:41-50.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 41-50
-
-
Elles, L.M.1
Uhlenbeck, O.C.2
-
31
-
-
70449394258
-
Engineering of the fluorescent-energy-conversion arm of phi29 DNA packaging motor for single-molecule studies
-
Lee TJ, Zhang H, Chang CL, Savran C, Guo P. 2009. Engineering of the fluorescent-energy-conversion arm of phi29 DNA packaging motor for single-molecule studies. Small 5:2453-2459. http://dx.doi.org/10.1002/smll.200900467.
-
(2009)
Small
, vol.5
, pp. 2453-2459
-
-
Lee, T.J.1
Zhang, H.2
Chang, C.L.3
Savran, C.4
Guo, P.5
-
32
-
-
84859298657
-
Sequential action of ATPase, ATP, ADP, Pi and dsDNA in procapsid-free system to enlighten mechanism in viral dsDNA packaging
-
Schwartz C, Fang H, Huang L, Guo P. 2012. Sequential action of ATPase, ATP, ADP, Pi and dsDNA in procapsid-free system to enlighten mechanism in viral dsDNA packaging. Nucleic Acids Res 40:2577-2586. http://dx.doi.org/10.1093/nar/gkr841.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2577-2586
-
-
Schwartz, C.1
Fang, H.2
Huang, L.3
Guo, P.4
-
33
-
-
77954065271
-
I-TASSER: a unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y. 2010. I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5:725-738 http://dx.doi.org/10.1038/nprot.2010.5.
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
34
-
-
33746987484
-
Double-stranded DNA translocation: structure and mechanism of hexameric FtsK
-
Massey TH, Mercogliano CP, Yates J, Sherratt DJ, Lowe J. 2006. Double-stranded DNA translocation: structure and mechanism of hexameric FtsK. Mol Cell 23:457-469. http://dx.doi.org/10.1016/j.molcel.2006.06.019.
-
(2006)
Mol Cell
, vol.23
, pp. 457-469
-
-
Massey, T.H.1
Mercogliano, C.P.2
Yates, J.3
Sherratt, D.J.4
Lowe, J.5
-
35
-
-
0029878720
-
VMD: visual molecular dynamics
-
Humphrey W, Dalke A, Schulten K. 1996. VMD: visual molecular dynamics. J Mol Graph 14:33-38. http://dx.doi.org/10.1016/0263-7855(96)00018-5.
-
(1996)
J Mol Graph
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
36
-
-
52049116701
-
Strand and nucleotidedependent ATPase activity of gp16 of bacterial virus phi29 DNA packaging motor
-
Lee TJ, Zhang H, Liang D, Guo P. 2008. Strand and nucleotidedependent ATPase activity of gp16 of bacterial virus phi29 DNA packaging motor. Virology 380:69-74. http://dx.doi.org/10.1016/j.virol.2008.07.003.
-
(2008)
Virology
, vol.380
, pp. 69-74
-
-
Lee, T.J.1
Zhang, H.2
Liang, D.3
Guo, P.4
-
37
-
-
0027965277
-
A highly sensitive system for the assay of in vitro viral assembly of bacteriophage phi29 of Bacillus subtilis
-
Lee CS, Guo P. 1994. A highly sensitive system for the assay of in vitro viral assembly of bacteriophage phi29 of Bacillus subtilis. Virology 202: 1039-1042. http://dx.doi.org/10.1006/viro.1994.1434.
-
(1994)
Virology
, vol.202
, pp. 1039-1042
-
-
Lee, C.S.1
Guo, P.2
-
38
-
-
21744446127
-
AAA+ proteins: have engine, will work
-
Hanson PI, Whiteheart SW. 2005. AAA+ proteins: have engine, will work. Nat Rev Mol Cell Biol 6:519-529. http://dx.doi.org/10.1038/nrm1684.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 519-529
-
-
Hanson, P.I.1
Whiteheart, S.W.2
-
39
-
-
84861547480
-
Molecular characterization of podoviral bacteriophages virulent for Clostridium perfringens and their comparison with members of the Picovirinae
-
Volozhantsev NV, Oakley BB, Morales CA, Verevkin VV, Bannov VA, Krasilnikova VM, Popova AV, Zhilenkov EL, Garrish JK, Schegg KM, Woolsey R, Quilici DR, Line JE, Hiett KL, Siragusa GR, Svetoch EA, Seal BS. 2012. Molecular characterization of podoviral bacteriophages virulent for Clostridium perfringens and their comparison with members of the Picovirinae. PLoS One 7:e38283. http://dx.doi.org/10.1371/journal.pone.0038283.
-
(2012)
PLoS One
, vol.7
-
-
Volozhantsev, N.V.1
Oakley, B.B.2
Morales, C.A.3
Verevkin, V.V.4
Bannov, V.A.5
Krasilnikova, V.M.6
Popova, A.V.7
Zhilenkov, E.L.8
Garrish, J.K.9
Schegg, K.M.10
Woolsey, R.11
Quilici, D.R.12
Line, J.E.13
Hiett, K.L.14
Siragusa, G.R.15
Svetoch, E.A.16
Seal, B.S.17
-
40
-
-
0035252083
-
The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase
-
Gomis-Ruth FX, Moncalian G, Perez-Luque R, Gonzalez A, Cabezon E, CFde la, Coll M. 2001. The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature 409:637-641. http://dx.doi.org/10.1038/35054586.
-
(2001)
Nature
, vol.409
, pp. 637-641
-
-
Gomis-Ruth, F.X.1
Moncalian, G.2
Perez-Luque, R.3
Gonzalez, A.4
Cabezon, E.5
de la Cruz, F.6
Coll, M.7
-
41
-
-
84863923408
-
Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system
-
Wallden K, Williams R, Yan J, Lian PW, Wang L, Thalassinos K, Orlova EV, Waksman G. 2012. Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system. Proc Natl Acad Sci U S A 109:11348-11353. http://dx.doi.org/10.1073/pnas.1201428109.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 11348-11353
-
-
Wallden, K.1
Williams, R.2
Yan, J.3
Lian, P.W.4
Wang, L.5
Thalassinos, K.6
Orlova, E.V.7
Waksman, G.8
-
42
-
-
1642377971
-
Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and intersubunit interactions in AAA and AAA+ ATPases
-
Ogura T, Whiteheart SW, Wilkinson AJ. 2004. Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and intersubunit interactions in AAA and AAA+ ATPases. J Struct Biol 146:106-112 http://dx.doi.org/10.1016/j.jsb.2003.11.008.
-
(2004)
J Struct Biol
, vol.146
, pp. 106-112
-
-
Ogura, T.1
Whiteheart, S.W.2
Wilkinson, A.J.3
-
43
-
-
78149460165
-
Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ATPase for remodeling bacterial RNApolymerase
-
Chen B, Sysoeva TA, Chowdhury S, Guo L, De CS, Hanson JA, Yang H, Nixon BT. 2010. Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ATPase for remodeling bacterial RNApolymerase. Structure 18:1420-1430. http://dx.doi.org/10.1016/j.str.2010.08.018.
-
(2010)
Structure
, vol.18
, pp. 1420-1430
-
-
Chen, B.1
Sysoeva, T.A.2
Chowdhury, S.3
Guo, L.4
De, C.S.5
Hanson, J.A.6
Yang, H.7
Nixon, B.T.8
-
44
-
-
70350344051
-
Running in reverse: the structural basis for translocation polarity in hexameric helicases
-
Thomsen ND, Berger JM. 2009. Running in reverse: the structural basis for translocation polarity in hexameric helicases. Cell 139:523-534. http://dx.doi.org/10.1016/j.cell.2009.08.043.
-
(2009)
Cell
, vol.139
, pp. 523-534
-
-
Thomsen, N.D.1
Berger, J.M.2
-
45
-
-
4544386863
-
Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation
-
Mancini EJ, Kainov DE, Grimes JM, Tuma R, Bamford DH, Stuart DI. 2004 Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation. Cell 118: 743-755. http://dx.doi.org/10.1016/j.cell.2004.09.007.
-
(2004)
Cell
, vol.118
, pp. 743-755
-
-
Mancini, E.J.1
Kainov, D.E.2
Grimes, J.M.3
Tuma, R.4
Bamford, D.H.5
Stuart, D.I.6
-
46
-
-
0034625236
-
Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides
-
Singleton MR, Sawaya MR, Ellenberger T, Wigley DB. 2000. Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides. Cell 101:589-600. http://dx.doi.org/10.1016/S0092-8674(00)80871-5.
-
(2000)
Cell
, vol.101
, pp. 589-600
-
-
Singleton, M.R.1
Sawaya, M.R.2
Ellenberger, T.3
Wigley, D.B.4
-
47
-
-
0041561083
-
Use of acetone to attain highly active and soluble DNA packaging protein gp16 of phi29 for ATPase assay
-
Huang LP, Guo P. 2003. Use of acetone to attain highly active and soluble DNA packaging protein gp16 of phi29 for ATPase assay. Virology 312: 449-457. http://dx.doi.org/10.1016/S0042-6822(03)00241-1.
-
(2003)
Virology
, vol.312
, pp. 449-457
-
-
Huang, L.P.1
Guo, P.2
-
48
-
-
0037407177
-
Use of PEG to acquire highly soluble DNApackaging enzyme gp16 of bacterial virus phi29 for stoichiometry quantification
-
Huang LP, Guo P. 2003. Use of PEG to acquire highly soluble DNApackaging enzyme gp16 of bacterial virus phi29 for stoichiometry quantification. J Virol Methods 109:235-244. http://dx.doi.org/10.1016/S0166-0934(03)00077-6.
-
(2003)
J Virol Methods
, vol.109
, pp. 235-244
-
-
Huang, L.P.1
Guo, P.2
-
49
-
-
0037466534
-
Only one pRNA hexamer but multiple copies of the DNA-packaging protein gp16 are needed for the motor to package bacterial virus phi29 genomic DNA
-
Shu D, Guo P. 2003. Only one pRNA hexamer but multiple copies of the DNA-packaging protein gp16 are needed for the motor to package bacterial virus phi29 genomic DNA. Virology 309:108-113. http://dx.doi.org/10.1016/S0042-6822(03)00011-4.
-
(2003)
Virology
, vol.309
, pp. 108-113
-
-
Shu, D.1
Guo, P.2
-
50
-
-
84862878463
-
"Push through one-way valve" mechanism of viral DNA packaging
-
Zhang H, Schwartz C, De Donatis GM, Guo P. 2012. "Push through one-way valve" mechanism of viral DNA packaging. Adv Virus Res 83: 415-465. http://dx.doi.org/10.1016/B978-0-12-394438-2.00009-8.
-
(2012)
Adv Virus Res
, vol.83
, pp. 415-465
-
-
Zhang, H.1
Schwartz, C.2
De Donatis, G.M.3
Guo, P.4
-
51
-
-
0035504276
-
Purification and functional characterization of p16, the ATPase of the bacteriophage phi29 packaging machinery
-
Ibarra B, Valpuesta JM, Carrascosa JL. 2001. Purification and functional characterization of p16, the ATPase of the bacteriophage phi29 packaging machinery. Nucleic Acids Res 29:4264-4273. http://dx.doi.org/10.1093/nar/29.21.4264.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4264-4273
-
-
Ibarra, B.1
Valpuesta, J.M.2
Carrascosa, J.L.3
-
52
-
-
0023225629
-
A small viral RNA is required for in vitro packaging of bacteriophage phi29 DNA
-
Guo P, Erickson S, Anderson D. 1987. A small viral RNA is required for in vitro packaging of bacteriophage phi29 DNA. Science 236:690-694. http://dx.doi.org/10.1126/science.3107124.
-
(1987)
Science
, vol.236
, pp. 690-694
-
-
Guo, P.1
Erickson, S.2
Anderson, D.3
-
53
-
-
0032110708
-
Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation
-
Guo P, Zhang C, Chen C, Trottier M, Garver K. 1998. Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation. Mol Cell 2:149-155. http://dx.doi.org/10.1016/S1097-2765(00)80124-0.
-
(1998)
Mol Cell
, vol.2
, pp. 149-155
-
-
Guo, P.1
Zhang, C.2
Chen, C.3
Trottier, M.4
Garver, K.5
-
54
-
-
84874531575
-
Solid-state and biological nanopore for real-time sensing of single chemical and sequencing of DNA
-
Haque F, Li J, Wu H-C, Liang X-J, Guo P. 2013. Solid-state and biological nanopore for real-time sensing of single chemical and sequencing of DNA. Nano Today 8:56-74. http://dx.doi.org/10.1016/j.nantod.2012.12.008.
-
(2013)
Nano Today
, vol.8
, pp. 56-74
-
-
Haque, F.1
Li, J.2
Wu, H.-C.3
Liang, X.-J.4
Guo, P.5
-
55
-
-
80455154991
-
Thermodynamically stable RNA three-way junctions for constructing multifunctional nanoparticles for delivery of therapeutics
-
Shu D, Shu Y, Haque F, Abdelmawla S, Guo P. 2011. Thermodynamically stable RNA three-way junctions for constructing multifunctional nanoparticles for delivery of therapeutics. Nat Nanotechnol 6:658-667. http://dx.doi.org/10.1038/nnano.2011.105.
-
(2011)
Nat Nanotechnol
, vol.6
, pp. 658-667
-
-
Shu, D.1
Shu, Y.2
Haque, F.3
Abdelmawla, S.4
Guo, P.5
-
56
-
-
84860360735
-
Real-time sensing and discrimination of single chemicals using the channel of phi29 DNA packaging nanomotor
-
Haque F, Lunn J, Fang H, Smithrud D, Guo P. 2012. Real-time sensing and discrimination of single chemicals using the channel of phi29 DNA packaging nanomotor. ACS Nano 6:3251-3261. http://dx.doi.org/10.1021/nn3001615.
-
(2012)
ACS Nano
, vol.6
, pp. 3251-3261
-
-
Haque, F.1
Lunn, J.2
Fang, H.3
Smithrud, D.4
Guo, P.5
-
57
-
-
84865784936
-
Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers
-
Haque F, Shu D, Shu Y, Shlyakhtenko L, Rychahou P, Evers M, Guo P. 2012 Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers. Nano Today 7:245-257. http://dx.doi.org/10.1016/j.nantod.2012.06.010.
-
(2012)
Nano Today
, vol.7
, pp. 245-257
-
-
Haque, F.1
Shu, D.2
Shu, Y.3
Shlyakhtenko, L.4
Rychahou, P.5
Evers, M.6
Guo, P.7
-
58
-
-
84888863270
-
Engineered nanopore of phi29 DNA-packaging motor for real-time detection of single colon cancer specific antibody in serum
-
Wang S, Haque F, Rychahou PG, Evers BM, Guo P. 2013. Engineered nanopore of phi29 DNA-packaging motor for real-time detection of single colon cancer specific antibody in serum. ACS Nano 7:9814-9822. http://dx.doi.org/10.1021/nn404435v.
-
(2013)
ACS Nano
, vol.7
, pp. 9814-9822
-
-
Wang, S.1
Haque, F.2
Rychahou, P.G.3
Evers, B.M.4
Guo, P.5
-
59
-
-
84912150523
-
Binomial distribution for quantification of protein subunits in biological nanoassemblies and functional nanomachines
-
Fang H, Zhang P, Huang LP, Zhao Z, Pi F, Montemagno C, Guo P. 2014 Binomial distribution for quantification of protein subunits in biological nanoassemblies and functional nanomachines. Nanomedicine 10: 1433-1440. http://dx.doi.org/10.1016/j.nano.2014.03.005.
-
(2014)
Nanomedicine
, vol.10
, pp. 1433-1440
-
-
Fang, H.1
Zhang, P.2
Huang, L.P.3
Zhao, Z.4
Pi, F.5
Montemagno, C.6
Guo, P.7
-
60
-
-
84936972846
-
New approach to develop ultra-high inhibitory drug using the power-function of the stoichiometry of the targeted nanomachine or biocomplex
-
Shu D, Pi F, Wang C, Zhang P, Guo P. 2015. New approach to develop ultra-high inhibitory drug using the power-function of the stoichiometry of the targeted nanomachine or biocomplex. Nanomedicine 10:1881-1897 http://dx.doi.org/10.2217/nnm.15.37.
-
(2015)
Nanomedicine
, vol.10
, pp. 1881-1897
-
-
Shu, D.1
Pi, F.2
Wang, C.3
Zhang, P.4
Guo, P.5
-
61
-
-
31344436408
-
Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29
-
Lee TJ, Guo P. 2006. Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29. J Mol Biol 356: 589-599. http://dx.doi.org/10.1016/j.jmb.2005.10.045.
-
(2006)
J Mol Biol
, vol.356
, pp. 589-599
-
-
Lee, T.J.1
Guo, P.2
-
62
-
-
77956448643
-
One-way traffic of a viral motor channel for double-stranded DNA translocation
-
Jing P, Haque F, Shu D, Montemagno C, Guo P. 2010. One-way traffic of a viral motor channel for double-stranded DNA translocation. Nano Lett 10:3620-3627. http://dx.doi.org/10.1021/nl101939e.
-
(2010)
Nano Lett
, vol.10
, pp. 3620-3627
-
-
Jing, P.1
Haque, F.2
Shu, D.3
Montemagno, C.4
Guo, P.5
-
63
-
-
84896522348
-
Elastic properties and heterogeneous stiffness of the Phi29 motor connector channel
-
Kumar R, Grubmuller H. 2014. Elastic properties and heterogeneous stiffness of the Phi29 motor connector channel. Biophys J 106:1338-1348. http://dx.doi.org/10.1016/j.bpj.2014.01.028.
-
(2014)
Biophys J
, vol.106
, pp. 1338-1348
-
-
Kumar, R.1
Grubmuller, H.2
-
64
-
-
0034949894
-
Myosin learns to walk
-
Mehta A. 2001. Myosin learns to walk. J Cell Sci 114:1981-1998.
-
(2001)
J Cell Sci
, vol.114
, pp. 1981-1998
-
-
Mehta, A.1
-
65
-
-
0033536183
-
Single kinesin molecules studied with a molecular force clamp
-
Visscher K, Schnitzer MJ, Block SM. 1999. Single kinesin molecules studied with a molecular force clamp. Nature 400:184-189. http://dx.doi.org/10.1038/22146.
-
(1999)
Nature
, vol.400
, pp. 184-189
-
-
Visscher, K.1
Schnitzer, M.J.2
Block, S.M.3
-
66
-
-
0029879228
-
Direct observation of single kinesin molecules moving along microtubules
-
Vale RD, Funatsu T, Pierce DW, Romberg L, Harada Y, Yanagida T. 1996 Direct observation of single kinesin molecules moving along microtubules. Nature 380:451-453. http://dx.doi.org/10.1038/380451a0.
-
(1996)
Nature
, vol.380
, pp. 451-453
-
-
Vale, R.D.1
Funatsu, T.2
Pierce, D.W.3
Romberg, L.4
Harada, Y.5
Yanagida, T.6
-
67
-
-
0035804245
-
Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase
-
Harada Y, Ohara O, Takatsuki A, Itoh H, Shimamoto N, Kinosita K, Jr. 2001 Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase. Nature 409:113-115. http://dx.doi.org/10.1038/35051126.
-
(2001)
Nature
, vol.409
, pp. 113-115
-
-
Harada, Y.1
Ohara, O.2
Takatsuki, A.3
Itoh, H.4
Shimamoto, N.5
Kinosita, K.6
-
68
-
-
0028788932
-
Rotary DNA motors
-
Doering C, Ermentrout B, Oster G. 1995. Rotary DNA motors. Biophys J 69:2256-2267. http://dx.doi.org/10.1016/S0006-3495(95)80096-2.
-
(1995)
Biophys J
, vol.69
, pp. 2256-2267
-
-
Doering, C.1
Ermentrout, B.2
Oster, G.3
-
69
-
-
0037067703
-
Stepping rotation of F(1)-ATPase with one, two, or three altered catalytic sites that bind ATP only slowly
-
Ariga T, Masaike T, Noji H, Yoshida M. 2002. Stepping rotation of F(1)-ATPase with one, two, or three altered catalytic sites that bind ATP only slowly. J Biol Chem 277:24870-24874. http://dx.doi.org/10.1074/jbc.M202582200.
-
(2002)
J Biol Chem
, vol.277
, pp. 24870-24874
-
-
Ariga, T.1
Masaike, T.2
Noji, H.3
Yoshida, M.4
-
70
-
-
84884504887
-
Discovery of a new motion mechanism of biomotors similar to the earth revolving around the sun without rotation
-
Guo P, Schwartz C, Haak J, Zhao Z. 2013. Discovery of a new motion mechanism of biomotors similar to the earth revolving around the sun without rotation. Virology 446:133-143. http://dx.doi.org/10.1016/j.virol.2013.07.025.
-
(2013)
Virology
, vol.446
, pp. 133-143
-
-
Guo, P.1
Schwartz, C.2
Haak, J.3
Zhao, Z.4
-
71
-
-
84984619803
-
Development of potent antiviral drugs inspired by viral hexameric DNA packaging motors with revolving mechanism
-
29 June
-
Pi F, Zhao Z, Chelikani V, Yoder K, Kvaratskhelia M, Guo P. 29 June 2016 Development of potent antiviral drugs inspired by viral hexameric DNA packaging motors with revolving mechanism. J Virol http://dx.doi.org/10.1128/JVI.00508-16.
-
(2016)
J Virol
-
-
Pi, F.1
Zhao, Z.2
Chelikani, V.3
Yoder, K.4
Kvaratskhelia, M.5
Guo, P.6
-
72
-
-
63849263045
-
Motor mechanism for protein threading through Hsp104
-
Wendler P, Shorter J, Snead D, Plisson C, Clare DK, Lindquist S, Saibil HR. 2009. Motor mechanism for protein threading through Hsp104. Mol Cell 34:81-92. http://dx.doi.org/10.1016/j.molcel.2009.02.026.
-
(2009)
Mol Cell
, vol.34
, pp. 81-92
-
-
Wendler, P.1
Shorter, J.2
Snead, D.3
Plisson, C.4
Clare, D.K.5
Lindquist, S.6
Saibil, H.R.7
-
73
-
-
84885448973
-
Asymmetric processing of a substrate protein in sequential allosteric cycles of AAA+ nanomachines
-
Kravats AN, Tonddast-Navaei S, Bucher RJ, Stan G. 2013. Asymmetric processing of a substrate protein in sequential allosteric cycles of AAA+ nanomachines. J Chem Phys 139:121921. http://dx.doi.org/10.1063/1.4817410.
-
(2013)
J Chem Phys
, vol.139
-
-
Kravats, A.N.1
Tonddast-Navaei, S.2
Bucher, R.J.3
Stan, G.4
-
74
-
-
0027299633
-
DNA packaging ATPase of bacteriophage T3
-
Morita M, Tasaka M, Fujisawa H. 1993. DNA packaging ATPase of bacteriophage T3. Virology 193:748-752. http://dx.doi.org/10.1006/viro.1993.1183.
-
(1993)
Virology
, vol.193
, pp. 748-752
-
-
Morita, M.1
Tasaka, M.2
Fujisawa, H.3
-
75
-
-
84873657291
-
Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures
-
Arai S, Saijo S, Suzuki K, Mizutani K, Kakinuma Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Yamato I, Murata T. 2013. Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures. Nature 493:703-707. http://dx.doi.org/10.1038/nature11778.
-
(2013)
Nature
, vol.493
, pp. 703-707
-
-
Arai, S.1
Saijo, S.2
Suzuki, K.3
Mizutani, K.4
Kakinuma, Y.5
Ishizuka-Katsura, Y.6
Ohsawa, N.7
Terada, T.8
Shirouzu, M.9
Yokoyama, S.10
Iwata, S.11
Yamato, I.12
Murata, T.13
-
76
-
-
84929178932
-
TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching
-
Ye Q, Rosenberg SC, Moeller A, Speir JA, Su TY, Corbett KD. 2015. TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching. eLife 4:e07367. http://dx.doi.org/10.7554/eLife.07367.
-
(2015)
eLife
, vol.4
-
-
Ye, Q.1
Rosenberg, S.C.2
Moeller, A.3
Speir, J.A.4
Su, T.Y.5
Corbett, K.D.6
-
77
-
-
84929291253
-
Subunit asymmetry and roles of conformational switching in the hexameric AAA+ ring of ClpX
-
Stinson BM, Baytshtok V, Schmitz KR, Baker TA, Sauer RT. 2015. Subunit asymmetry and roles of conformational switching in the hexameric AAA+ ring of ClpX. Nat Struct Mol Biol 22:411-416. http://dx.doi.org/10.1038/nsmb.3012.
-
(2015)
Nat Struct Mol Biol
, vol.22
, pp. 411-416
-
-
Stinson, B.M.1
Baytshtok, V.2
Schmitz, K.R.3
Baker, T.A.4
Sauer, R.T.5
-
78
-
-
1542375372
-
Asymmetry in the F1-ATPase and its implications for the rotational cycle
-
Sun SX, Wang H, Oster G. 2004. Asymmetry in the F1-ATPase and its implications for the rotational cycle. Biophys J 86:1373-1384. http://dx.doi.org/10.1016/S0006-3495(04)74208-3.
-
(2004)
Biophys J
, vol.86
, pp. 1373-1384
-
-
Sun, S.X.1
Wang, H.2
Oster, G.3
-
79
-
-
84864352599
-
ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote
-
Lyubimov AY, Costa A, Bleichert F, Botchan MR, Berger JM. 2012. ATP-dependent conformational dynamics underlie the functional asymmetry of the replicative helicase from a minimalist eukaryote. Proc Natl Acad Sci U S A 109:11999-12004. http://dx.doi.org/10.1073/pnas.1209406109.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 11999-12004
-
-
Lyubimov, A.Y.1
Costa, A.2
Bleichert, F.3
Botchan, M.R.4
Berger, J.M.5
-
80
-
-
0035150184
-
Unwinding the "Gordian knot" of helicase action
-
Soultanas P, Wigley DB. 2001. Unwinding the "Gordian knot" of helicase action. Trends Biochem Sci 26:47-54. http://dx.doi.org/10.1016/S0968-0004(00)01734-5.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 47-54
-
-
Soultanas, P.1
Wigley, D.B.2
-
81
-
-
84930074657
-
The Phyre2 web portal for protein modeling, prediction and analysis
-
Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ. 2015. The Phyre2 web portal for protein modeling, prediction and analysis. 2015. Nat Protoc 10:845-858. http://dx.doi.org/10.1038/nprot.2015.053.
-
(2015)
2015. Nat Protoc
, vol.10
, pp. 845-858
-
-
Kelley, L.A.1
Mezulis, S.2
Yates, C.M.3
Wass, M.N.4
Sternberg, M.J.5
|