ChiLin: A comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

BMC Bioinformatics

Volumn 17, Issue 1, 2016, Pages

  Qin, Qian ^a,b   Mei, Shenglin ^a,b   Wu, Qiu ^a,b   Sun, Hanfei ^a,b   Li, Lewyn ^d   Taing, Len ^c,d   Chen, Sujun ^a,b   Li, Fugen ^d   Liu, Tao ^f   Zang, Chongzhi ^c   Xu, Han ^c   Chen, Yiwen ^c   Meyer, Clifford A ^c   Zhang, Yong ^b   Brown, Myles ^d,e   Long, Henry W ^d   Liu, X Shirley ^a,b,c,d  

^a SHANGHAI PULMONARY HOSPITAL   (China)

^b TONGJI UNIVERSITY   (China)

^c HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^d DANA FARBER CANCER INSTITUTE   (United States)

^e BRIGHAM AND WOMEN S HOSPITAL   (United States)

^f UNIVERSITY AT BUFFALO   (United States)

Author keywords

Analysis pipeline; ChIP seq; DNase seq; Quality atlas

Indexed keywords

BATCH DATA PROCESSING; COMPUTER PROGRAMMING; OPEN SOURCE SOFTWARE; OPEN SYSTEMS; PIPELINES; QUALITY ASSURANCE; TRANSCRIPTION;

CHIP-SEQ; COLLABORATIVE PROJECTS; COMPREHENSIVE QUALITIES; DNASE-SEQ; HISTONE MODIFICATION; MODULAR SOFTWARES; PROTEIN-DNA INTERACTIONS; TRANSCRIPTION FACTOR BINDING;

QUALITY CONTROL;

DEOXYRIBONUCLEASE;

CHROMATIN IMMUNOPRECIPITATION; CHROMOSOMAL MAPPING; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETIC DATABASE; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; METABOLISM; PROCEDURES; QUALITY CONTROL; SOFTWARE; STATISTICAL ANALYSIS;

CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME MAPPING; DATA INTERPRETATION, STATISTICAL; DATABASES, GENETIC; DEOXYRIBONUCLEASES; GENE EXPRESSION REGULATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; QUALITY CONTROL; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84989361177     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1274-4     Document Type: Article

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