Development of a Loop Mediated Isothermal Amplification (LAMP) - Surface Enhanced Raman spectroscopy (SERS) assay for the detection of salmonella enterica serotype enteritidis

Theranostics

Volumn 6, Issue 4, 2016, Pages 522-532

  Draz, Mohamed Shehata ^a,b   Lu, Xiaonan ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b Tanta University   (Egypt)

Author keywords

Bacterial infections; Clinical diagnosis; Food safety; LAMP; Nanoprobe; Raman spectroscopy; SERS

Indexed keywords

GOLD NANOPARTICLE; BACTERIAL DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM DETECTION; CONTROLLED STUDY; DNA DETERMINATION; LIMIT OF DETECTION; LIMIT OF QUANTITATION; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; MEASUREMENT ACCURACY; NONHUMAN; RAMAN SPECTROMETRY; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY; SALMONELLA ENTERICA SEROVAR ENTERITIDIS; ANIMAL; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; MILK; NUCLEIC ACID AMPLIFICATION; PROCEDURES; SENSITIVITY AND SPECIFICITY; VALIDATION STUDY;

ANIMALS; BACTERIOLOGICAL TECHNIQUES; DNA, BACTERIAL; MILK; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SALMONELLA ENTERITIDIS; SENSITIVITY AND SPECIFICITY; SPECTRUM ANALYSIS, RAMAN;

EID: 84984685587     PISSN: None     EISSN: 18387640     Source Type: Journal    
DOI: 10.7150/thno.14391     Document Type: Article

References (37)

1. Hoelzer K, Switt AM, Wiedmann M. Animal contact as a source of human non-typhoidal salmonellosis. Veterinary Research. 2011; 42: 41-28.
2. Doyle ME, Kaspar C, Archer J, Klos R. White paper on human illness caused by Salmonella from all food and non-food vectors. FRI Briefings. 2009; 24: 1-81
3. Majowicz SE, Musto J, Scallan E, et al. The global burden of nontyphoidal Salmonella gastroenteritis. Clinical Infectious Diseases. 2010; 50: 882-889.
4. Hendriksen RS, Vieira AR, Karlsmose S, et al. Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007. Foodborne Pathogens and Disease. 2011; 8: 887-900.
5. Acheson D, Hohmann EL. Nontyphoidal salmonellosis. Clinical Infectious Diseases. 2001; 32: 263-269.
6. Wallace H, June G, Sherrod P, Hammack T, Amaguana R. Salmonella In Food and Drug Administration Bacteriological Analytical Manual. Tomlinson ed, LA Hypertext Source: http://vm.cfsan.fda.gov/~comm/bam-5.html# Intro.1999.
7. Liu T, Liljebjelke K, Bartlett E, Hofacre C, Sanchez S, Maurer JJ. Application of nested polymerase chain reaction to detection of Salmonella in poultry environment. Journal of Food Protection. 2002; 65: 1227-1232.
8. Eriksson E, Aspan A. Comparison of culture, ELISA and PCR techniques for Salmonella detection in faecal samples for cattle, pig and poultry. BMC Veterinary Research. 2007; 3: 1-19.
9. Botteldoorn N, Van Coillie E, Grijspeerdt K, et al. Real-time reverse transcription PCR for the quantification of the mntH expression of Salmonella enterica as a function of growth phase and phagosome-like conditions. Journal of Microbiological Methods. 2006; 66: 125-135.
10. Qiao Y-M, Guo Y-C, Zhang X-E, et al. Loop-mediated isothermal amplification for rapid detection of Bacillus anthracis spores. Biotechnology Letters. 2007; 29: 1939-1946.
11. Maruyama F, Kenzaka T, Yamaguchi N, Tani K, Nasu M. Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification. Applied and Environmental Microbiology. 2003; 69: 5023-5028.
12. Ohtsuka K, Tanaka M, Ohtsuka T, Takatori K, Hara-Kudo Y. Comparison of detection methods for Escherichia coli O157 in beef livers and carcasses. Foodborne Pathogens and Disease. 2010; 7: 1563-1567.
13. Zhao X, Li Y, Wang L, et al. Development and application of a loop-mediated isothermal amplification method on rapid detection Escherichia coli O157 strains from food samples. Molecular Biology Reports. 2010; 37: 2183-2188.
14. Wang D, Wang Y, Wang J, Zhang X, Xiao F. Rapid detection of viable Listeria monocytogenes in raw milk using loop-mediated isothermal amplification with the aid of ethidium monoazide. Milchwissenschaft. 2011; 66: 426-429.
15. Zhao X, Wang L, Li Y, et al. Development and application of a loop-mediated isothermal amplification method on rapid detection of Pseudomonas aeruginosa strains. World Journal of Microbiology and Biotechnology. 2011; 27: 181-184.
16. Chen S, Wang F, Beaulieu JC, Stein RE, Ge B. Rapid detection of viable salmonellae in produce by coupling propidium monoazide with loop-mediated isothermal amplification. Applied and Environmental Microbiology. 2011; 77: 4008-4016.
17. Ye Y, Wang B, Huang F, et al. Application of in situ loop-mediated isothermal amplification method for detection of Salmonella in foods. Food Control. 2011; 22: 438-444.
18. Zhao X, Wang L, Chu J, et al. Development and application of a rapid and simple loop-mediated isothermal amplification method for food-borne Salmonella detection. Food Science and Biotechnology. 2010; 19: 1655-1659.
19. Yang H, Ma X, Zhang X, Wang Y, Zhang W. Development and evaluation of a loop-mediated isothermal amplification assay for the rapid detection of Staphylococcus aureus in food. European Food Research and Technology. 2011; 232: 769-776.
20. Nemoto J, Ikedo M, Kojima T, Momoda T, Konuma H, Hara-Kudo Y. Development and evaluation of a loop-mediated isothermal amplification assay for rapid and sensitive detection of Vibrio parahaemolyticus. Journal of Food Protection. 2011; 74: 1462-1467.
21. Yamazaki W, Kumeda Y, Uemura R, Misawa N. Evaluation of a loop-mediated isothermal amplification assay for rapid and simple detection of Vibrio parahaemolyticus in naturally contaminated seafood samples. Food Microbiology. 2011; 28: 1238-1241.
22. Zhao X, Wang L, Chu J, et al. Rapid detection of Vibrio parahaemolyticus strains and virulent factors by loop-mediated isothermal amplification assays. Food Science and Biotechnology. 2010; 19: 1191-1197.
23. Notomi T, Okayama H, Masubuchi H, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Research. 2000; 28: e63.
24. Njiru ZK. Loop-mediated isothermal amplification technology: towards point of care diagnostics. PLoS Neglected Tropical Diseases. 2012; 6: e1572.
25. Karthik K, Rathore R, Thomas P, et al. New closed tube loop mediated isothermal amplification assay for prevention of product cross-contamination. MethodsX. 2014; 1: 137-143.
26. Savan R, Kono T, Itami T, Sakai M. Loop-mediated isothermal amplification: an emerging technology for detection of fish and shellfish pathogens. Journal of Fish Diseases. 2005; 28: 573-581.
27. Li JF, Huang YF, Ding Y, et al. Shell-isolated nanoparticle-enhanced Raman spectroscopy. Nature. 2010; 464: 392-395.
28. Haran G. Single-molecule Raman spectroscopy: a probe of surface dynamics and plasmonic fields. Accounts of Chemical Research. 2010; 43: 1135-1143.
29. Wang Y, Irudayaraj J. Surface-enhanced Raman spectroscopy at single-molecule scale and its implications in biology. Philosophical Transactions of the Royal Society B: Biological Sciences. 2013; 368: 20120026.
30. Bizzarri AR, Cannistraro S. SERS detection of thrombin by protein recognition using functionalized gold nanoparticles. Nanomedicine: Nanotechnology, Biology and Medicine. 2007; 3: 306-310.
31. Drachev VP, Thoreson MD, Khaliullin EN, Davisson VJ, Shalaev VM. Surface-enhanced Raman difference between human insulin and insulin lispro detected with adaptive nanostructures. Journal of Physical Chemistry B. 2004; 108: 18046-18052.
32. Tripp RA, Dluhy RA, Zhao Y. Novel nanostructures for SERS biosensing. Nano Today. 2008; 3: 31-37.
33. Wang Y, Lee K, Irudayaraj J. Silver nanosphere SERS probes for sensitive identification of pathogens. Journal of Physical Chemistry C. 2010; 114: 16122-16128.
34. Yang JL, Ma G-p, Yang R, et al. Simple and rapid detection of Salmonella serovar Enteritidis under field conditions by loop-mediated isothermal amplification. Journal of Applied Microbiology. 2010; 109: 1715-1723.
35. Storhoff JJ, Elghanian R, Mucic RC, Mirkin CA, Letsinger RL. One-pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes. Journal of the American Chemical Society. 1998; 120: 1959-1964.
36. Lakowicz JR, Geddes CD, Gryczynski I, et al. Advances in surface-enhanced fluorescence. Journal of Fluorescence. 2004; 14(4): 425-441.
37. Lakowicz JR. Radiative decay engineering: biophysical and biomedical applications. Analytical Biochemistry. 2001; 298: 1-24.