메뉴 건너뛰기




Volumn 14, Issue 7, 2016, Pages

Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ALLELE; ARTICLE; CPG ISLAND; DNA METHYLATION; EPIGENETICS; FEMALE; GENE CLUSTER; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; GENETIC VARIATION; GENOME IMPRINTING; MALE; NASONIA GIRAULTI; NASONIA VITRIPENNIS; NONHUMAN; RNA SEQUENCE; SEQUENCE ALIGNMENT; WASP; ANIMAL; CLASSIFICATION; GENE; GENETIC EPIGENESIS; GENETICS; HYBRIDIZATION; INHERITANCE; INSECT GENOME; MOLECULAR EVOLUTION; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENCE;

EID: 84982816256     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1002500     Document Type: Article
Times cited : (49)

References (80)
  • 1
    • 7444235907 scopus 로고    scopus 로고
    • Cis-acting regulatory variation in the human genome
    • 15499010, .;:–.
    • Pastinen T, Hudson TJ, Cis-acting regulatory variation in the human genome. Science. 2004;306:647–650. 15499010
    • (2004) Science , vol.306 , pp. 647-650
    • Pastinen, T.1    Hudson, T.J.2
  • 2
    • 65549086559 scopus 로고    scopus 로고
    • A yeast hybrid provides insight into the evolution of gene expression regulation
    • 19407207, .;:–.
    • Tirosh I, Reikhav S, Levy AA, Barkai N, A yeast hybrid provides insight into the evolution of gene expression regulation. Science. 2009;324:659–662. doi: 10.1126/science.116976619407207
    • (2009) Science , vol.324 , pp. 659-662
    • Tirosh, I.1    Reikhav, S.2    Levy, A.A.3    Barkai, N.4
  • 3
    • 84864834178 scopus 로고    scopus 로고
    • Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids
    • 22805557, ..;:.
    • Shi X, Ng DW, Zhang C, Comai L, Ye W, et al. Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids. Nat Commun. 2012;3:950. doi: 10.1038/ncomms195422805557
    • (2012) Nat Commun , vol.3 , pp. 950
    • Shi, X.1    Ng, D.W.2    Zhang, C.3    Comai, L.4    Ye, W.5
  • 4
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • 15229602, .;:–.
    • Wittkopp PJ, Haerum BK, Clark AG, Evolutionary changes in cis and trans gene regulation. Nature. 2004;430:85–88. 15229602
    • (2004) Nature , vol.430 , pp. 85-88
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 5
    • 84870538799 scopus 로고    scopus 로고
    • Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
    • 22919075, ..;:–.
    • Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, et al. Extensive compensatory cis-trans regulation in the evolution of mouse gene expression. Genome Res. 2012;22:2376–2384. doi: 10.1101/gr.142281.11222919075
    • (2012) Genome Res , vol.22 , pp. 2376-2384
    • Goncalves, A.1    Leigh-Brown, S.2    Thybert, D.3    Stefflova, K.4    Turro, E.5
  • 6
    • 84905484562 scopus 로고    scopus 로고
    • Cis and trans effects of human genomic variants on gene expression
    • 25010687, ..;:.
    • Bryois J, Buil A, Evans DM, Kemp JP, Montgomery SB, et al. Cis and trans effects of human genomic variants on gene expression. PLoS Genet. 2014;10:e1004461. doi: 10.1371/journal.pgen.100446125010687
    • (2014) PLoS Genet , vol.10 , pp. e1004461
    • Bryois, J.1    Buil, A.2    Evans, D.M.3    Kemp, J.P.4    Montgomery, S.B.5
  • 7
    • 84883792518 scopus 로고    scopus 로고
    • DNA methylation in mammals
    • 24789823, .;:.
    • Li E, Zhang Y, DNA methylation in mammals. Cold Spring Harb Perspect Biol. 2014;6:a019133. doi: 10.1101/cshperspect.a01913324789823
    • (2014) Cold Spring Harb Perspect Biol , vol.6 , pp. a019133
    • Li, E.1    Zhang, Y.2
  • 8
    • 84878136507 scopus 로고    scopus 로고
    • Dnmt2-dependent methylomes lack defined DNA methylation patterns
    • 23641003, ..;:–.
    • Raddatz G, Guzzardo PM, Olova N, Fantappie MR, Rampp M, et al. Dnmt2-dependent methylomes lack defined DNA methylation patterns. Proc Natl Acad Sci U S A. 2013;110:8627–8631. doi: 10.1073/pnas.130672311023641003
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 8627-8631
    • Raddatz, G.1    Guzzardo, P.M.2    Olova, N.3    Fantappie, M.R.4    Rampp, M.5
  • 9
    • 84936157640 scopus 로고    scopus 로고
    • N6-methyladenine DNA modification in Drosophila
    • 25936838, ..;:–.
    • Zhang G, Huang H, Liu D, Cheng Y, Liu X, et al. N6-methyladenine DNA modification in Drosophila. Cell. 2015;161:893–906. doi: 10.1016/j.cell.2015.04.01825936838
    • (2015) Cell , vol.161 , pp. 893-906
    • Zhang, G.1    Huang, H.2    Liu, D.3    Cheng, Y.4    Liu, X.5
  • 10
    • 84922248875 scopus 로고    scopus 로고
    • Eusocial insects as emerging models for behavioural epigenetics
    • 25200663, ..;:–.
    • Yan H, Simola DF, Bonasio R, Liebig J, Berger SL, et al. Eusocial insects as emerging models for behavioural epigenetics. Nat Rev Genet. 2014;15:677–688. doi: 10.1038/nrg378725200663
    • (2014) Nat Rev Genet , vol.15 , pp. 677-688
    • Yan, H.1    Simola, D.F.2    Bonasio, R.3    Liebig, J.4    Berger, S.L.5
  • 11
    • 84867397446 scopus 로고    scopus 로고
    • Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator
    • 22885060, ..;:–.
    • Bonasio R, Li Q, Lian J, Mutti NS, Jin L, et al. Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Curr Biol. 2012;22:1755–1764. doi: 10.1016/j.cub.2012.07.04222885060
    • (2012) Curr Biol , vol.22 , pp. 1755-1764
    • Bonasio, R.1    Li, Q.2    Lian, J.3    Mutti, N.S.4    Jin, L.5
  • 12
    • 84903212480 scopus 로고    scopus 로고
    • The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera
    • 24924193, ..;:–.
    • Drewell RA, Bush EC, Remnant EJ, Wong GT, Beeler SM, et al. The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera. Development. 2014;141:2702–2711. doi: 10.1242/dev.11016324924193
    • (2014) Development , vol.141 , pp. 2702-2711
    • Drewell, R.A.1    Bush, E.C.2    Remnant, E.J.3    Wong, G.T.4    Beeler, S.M.5
  • 13
    • 84886283037 scopus 로고    scopus 로고
    • Genetic underpinnings of division of labor in the honeybee (Apis mellifera)
    • 24012355, .;:–.
    • Lattorff HM, Moritz RF, Genetic underpinnings of division of labor in the honeybee (Apis mellifera). Trends Genet. 2013;29:641–648. doi: 10.1016/j.tig.2013.08.00224012355
    • (2013) Trends Genet , vol.29 , pp. 641-648
    • Lattorff, H.M.1    Moritz, R.F.2
  • 14
    • 84866736392 scopus 로고    scopus 로고
    • Reversible switching between epigenetic states in honeybee behavioral subcastes
    • 22983211, ..;:–.
    • Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, et al. Reversible switching between epigenetic states in honeybee behavioral subcastes. Nat Neurosci. 2012;15:1371–1373. doi: 10.1038/nn.321822983211
    • (2012) Nat Neurosci , vol.15 , pp. 1371-1373
    • Herb, B.R.1    Wolschin, F.2    Hansen, K.D.3    Aryee, M.J.4    Langmead, B.5
  • 15
    • 84958779750 scopus 로고    scopus 로고
    • Robust DNA Methylation in the Clonal Raider Ant Brain
    • 26804553, .;:–.
    • Libbrecht R, Oxley PR, Keller L, Kronauer DJ, Robust DNA Methylation in the Clonal Raider Ant Brain. Curr Biol. 2016;26:391–395. doi: 10.1016/j.cub.2015.12.04026804553
    • (2016) Curr Biol , vol.26 , pp. 391-395
    • Libbrecht, R.1    Oxley, P.R.2    Keller, L.3    Kronauer, D.J.4
  • 16
    • 84946763289 scopus 로고    scopus 로고
    • Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
    • 26483466, ..;:–.
    • Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, et al. Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proc Natl Acad Sci U S A. 2015;112:13970–13975. doi: 10.1073/pnas.151593711226483466
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 13970-13975
    • Patalano, S.1    Vlasova, A.2    Wyatt, C.3    Ewels, P.4    Camara, F.5
  • 17
    • 70949097154 scopus 로고    scopus 로고
    • The parasitoid wasp Nasonia: an emerging model system with haploid male genetics
    • .;pdb.emo134.
    • Werren JH, Loehlin DW, The parasitoid wasp Nasonia: an emerging model system with haploid male genetics. Cold Spring Harb Protoc. 2009;pdb.emo134.
    • (2009) Cold Spring Harb Protoc
    • Werren, J.H.1    Loehlin, D.W.2
  • 18
    • 74549184089 scopus 로고    scopus 로고
    • Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    • 20075255, ..;:–.
    • Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science. 2010;327:343–348. doi: 10.1126/science.117802820075255
    • (2010) Science , vol.327 , pp. 343-348
    • Werren, J.H.1    Richards, S.2    Desjardins, C.A.3    Niehuis, O.4    Gadau, J.5
  • 19
    • 84887312009 scopus 로고    scopus 로고
    • Function and evolution of DNA methylation in Nasonia vitripennis
    • 24130511, ..;:.
    • Wang X, Wheeler D, Avery A, Rago A, Choi JH, et al. Function and evolution of DNA methylation in Nasonia vitripennis. PLoS Genet. 2013;9:e1003872. doi: 10.1371/journal.pgen.100387224130511
    • (2013) PLoS Genet , vol.9 , pp. e1003872
    • Wang, X.1    Wheeler, D.2    Avery, A.3    Rago, A.4    Choi, J.H.5
  • 20
    • 84936083551 scopus 로고    scopus 로고
    • Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti
    • 26100871, .;:–.
    • Wang X, Werren JH, Clark AG, Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti. Proc Natl Acad Sci U S A. 2015;112:E3545–3554. doi: 10.1073/pnas.151033811226100871
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E3545-3554
    • Wang, X.1    Werren, J.H.2    Clark, A.G.3
  • 21
    • 0032618533 scopus 로고    scopus 로고
    • Imprinting and paternal genome elimination in insects
    • 10339741, .;:–.
    • Herrick G, Seger J, Imprinting and paternal genome elimination in insects. Results Probl Cell Differ. 1999;25:41–71. 10339741
    • (1999) Results Probl Cell Differ , vol.25 , pp. 41-71
    • Herrick, G.1    Seger, J.2
  • 22
    • 0024294411 scopus 로고
    • "selfish" B chromosome that enhances its transmission by eliminating the paternal genome
    • 3358129, .;:–.
    • Nur U, Werren JH, Eickbush DG, Burke WD, Eickbush TH A, "selfish" B chromosome that enhances its transmission by eliminating the paternal genome. Science. 1988;240:512–514. 3358129
    • (1988) Science , vol.240 , pp. 512-514
    • Nur, U.1    Werren, J.H.2    Eickbush, D.G.3    Burke, W.D.4    Eickbush, T.H.A.5
  • 23
    • 0035119163 scopus 로고    scopus 로고
    • Chromosome elimination in sciarid flies
    • 11223881, .;:–.
    • Goday C, Esteban MR, Chromosome elimination in sciarid flies. Bioessays. 2001;23:242–250. 11223881
    • (2001) Bioessays , vol.23 , pp. 242-250
    • Goday, C.1    Esteban, M.R.2
  • 24
    • 0032926609 scopus 로고    scopus 로고
    • The relationship between DNA methylation and chromosome imprinting in the coccid Planococcus citri
    • 10101170, .;:–.
    • Bongiorni S, Cintio O, Prantera G, The relationship between DNA methylation and chromosome imprinting in the coccid Planococcus citri. Genetics. 1999;151:1471–1478. 10101170
    • (1999) Genetics , vol.151 , pp. 1471-1478
    • Bongiorni, S.1    Cintio, O.2    Prantera, G.3
  • 26
    • 0035234557 scopus 로고    scopus 로고
    • Genomic imprinting: parental influence on the genome
    • 11253064, .;:–.
    • Reik W, Walter J, Genomic imprinting: parental influence on the genome. Nat Rev Genet. 2001;2:21–32. 11253064
    • (2001) Nat Rev Genet , vol.2 , pp. 21-32
    • Reik, W.1    Walter, J.2
  • 27
    • 79960530899 scopus 로고    scopus 로고
    • Genomic imprinting: the emergence of an epigenetic paradigm
    • 21765458, .;:–.
    • Ferguson-Smith AC, Genomic imprinting: the emergence of an epigenetic paradigm. Nat Rev Genet. 2011;12:565–575. doi: 10.1038/nrg303221765458
    • (2011) Nat Rev Genet , vol.12 , pp. 565-575
    • Ferguson-Smith, A.C.1
  • 30
    • 84879526709 scopus 로고    scopus 로고
    • Paternally expressed genes predominate in the placenta
    • 23754418, .;:–.
    • Wang X, Miller DC, Harman R, Antczak DF, Clark AG, Paternally expressed genes predominate in the placenta. Proc Natl Acad Sci U S A. 2013;110:10705–10710. doi: 10.1073/pnas.130899811023754418
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 10705-10710
    • Wang, X.1    Miller, D.C.2    Harman, R.3    Antczak, D.F.4    Clark, A.G.5
  • 31
    • 70449701815 scopus 로고    scopus 로고
    • Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology
    • 19284678, .;:.
    • Rowe SJ, Pong-Wong R, Haley CS, Knott SA, De Koning DJ, Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology. Genet Sel Evol. 2009;41:6. doi: 10.1186/1297-9686-41-619284678
    • (2009) Genet Sel Evol , vol.41 , pp. 6
    • Rowe, S.J.1    Pong-Wong, R.2    Haley, C.S.3    Knott, S.A.4    De Koning, D.J.5
  • 33
    • 84899023759 scopus 로고    scopus 로고
    • Transcriptome-wide investigation of genomic imprinting in chicken
    • 24452801, ..;:–.
    • Fresard L, Leroux S, Servin B, Gourichon D, Dehais P, et al. Transcriptome-wide investigation of genomic imprinting in chicken. Nucleic Acids Res. 2014;42:3768–3782. doi: 10.1093/nar/gkt139024452801
    • (2014) Nucleic Acids Res , vol.42 , pp. 3768-3782
    • Fresard, L.1    Leroux, S.2    Servin, B.3    Gourichon, D.4    Dehais, P.5
  • 34
    • 84941277660 scopus 로고    scopus 로고
    • Next-Generation Sequencing Techniques Reveal that Genomic Imprinting Is Absent in Day-Old Gallus domesticus Brains
    • 26161857, ..;:.
    • Wang Q, Li K, Zhang D, Li J, Xu G, et al. Next-Generation Sequencing Techniques Reveal that Genomic Imprinting Is Absent in Day-Old Gallus domesticus Brains. PLoS ONE. 2015;10:e0132345. doi: 10.1371/journal.pone.013234526161857
    • (2015) PLoS ONE , vol.10 , pp. e0132345
    • Wang, Q.1    Li, K.2    Zhang, D.3    Li, J.4    Xu, G.5
  • 35
    • 0025958320 scopus 로고
    • Genomic imprinting in mammalian development: a parental tug-of-war
    • 2035190, .;:–.
    • Moore T, Haig D, Genomic imprinting in mammalian development: a parental tug-of-war. Trends Genet. 1991;7:45–49. 2035190
    • (1991) Trends Genet , vol.7 , pp. 45-49
    • Moore, T.1    Haig, D.2
  • 36
    • 84898871225 scopus 로고    scopus 로고
    • Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species
    • 24640988, .;:–.
    • Capuano F, Mulleder M, Kok R, Blom HJ, Ralser M, Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal Chem. 2014;86:3697–3702. doi: 10.1021/ac500447w24640988
    • (2014) Anal Chem , vol.86 , pp. 3697-3702
    • Capuano, F.1    Mulleder, M.2    Kok, R.3    Blom, H.J.4    Ralser, M.5
  • 37
    • 84899870930 scopus 로고    scopus 로고
    • Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity
    • 24558263, ..;:–.
    • Takayama S, Dhahbi J, Roberts A, Mao G, Heo SJ, et al. Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity. Genome Res. 2014;24:821–830. doi: 10.1101/gr.162412.11324558263
    • (2014) Genome Res , vol.24 , pp. 821-830
    • Takayama, S.1    Dhahbi, J.2    Roberts, A.3    Mao, G.4    Heo, S.J.5
  • 38
    • 33746428062 scopus 로고    scopus 로고
    • Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting
    • 16702434, .;:–.
    • Wittkopp PJ, Haerum BK, Clark AG, Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting. Genetics. 2006;173:1817–1821. 16702434
    • (2006) Genetics , vol.173 , pp. 1817-1821
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 39
    • 84864321089 scopus 로고    scopus 로고
    • Genomic imprinting absent in Drosophila melanogaster adult females
    • 22840398, .;:–.
    • Coolon JD, Stevenson KR, McManus CJ, Graveley BR, Wittkopp PJ, Genomic imprinting absent in Drosophila melanogaster adult females. Cell Rep. 2012;2:69–75. doi: 10.1016/j.celrep.2012.06.01322840398
    • (2012) Cell Rep , vol.2 , pp. 69-75
    • Coolon, J.D.1    Stevenson, K.R.2    McManus, C.J.3    Graveley, B.R.4    Wittkopp, P.J.5
  • 40
    • 79953061203 scopus 로고    scopus 로고
    • Insects as innovative models for functional studies of DNA methylation
    • 21288591, .;:–.
    • Lyko F, Maleszka R, Insects as innovative models for functional studies of DNA methylation. Trends Genet. 2011;27:127–131. doi: 10.1016/j.tig.2011.01.00321288591
    • (2011) Trends Genet , vol.27 , pp. 127-131
    • Lyko, F.1    Maleszka, R.2
  • 41
    • 2942592512 scopus 로고    scopus 로고
    • Theory of genomic imprinting conflict in social insects
    • 12871603, .;:.
    • Queller DC, Theory of genomic imprinting conflict in social insects. BMC Evol Biol. 2003;3:15. 12871603
    • (2003) BMC Evol Biol , vol.3 , pp. 15
    • Queller, D.C.1
  • 42
  • 43
    • 84987741078 scopus 로고    scopus 로고
    • Intragenomic conflict over queen determination favours genomic imprinting in eusocial Hymenoptera
    • 22378809, .;:–.
    • Dobata S, Tsuji K, Intragenomic conflict over queen determination favours genomic imprinting in eusocial Hymenoptera. Proc Biol Sci. 2012;279:2553–2560. doi: 10.1098/rspb.2011.267322378809
    • (2012) Proc Biol Sci , vol.279 , pp. 2553-2560
    • Dobata, S.1    Tsuji, K.2
  • 44
    • 84955457512 scopus 로고    scopus 로고
    • Testing the kinship theory of intragenomic conflict in honey bees (Apis mellifera)
    • 26755583, ..;:–.
    • Galbraith DA, Kocher SD, Glenn T, Albert I, Hunt GJ, et al. Testing the kinship theory of intragenomic conflict in honey bees (Apis mellifera). Proc Natl Acad Sci U S A. 2016;113:1020–1025. doi: 10.1073/pnas.151663611326755583
    • (2016) Proc Natl Acad Sci U S A , vol.113 , pp. 1020-1025
    • Galbraith, D.A.1    Kocher, S.D.2    Glenn, T.3    Albert, I.4    Hunt, G.J.5
  • 45
    • 84893653365 scopus 로고    scopus 로고
    • Methylation and worker reproduction in the bumble-bee (Bombus terrestris)
    • 24523266, .;:.
    • Amarasinghe HE, Clayton CI, Mallon EB, Methylation and worker reproduction in the bumble-bee (Bombus terrestris). Proc Biol Sci. 2014;281:20132502. doi: 10.1098/rspb.2013.250224523266
    • (2014) Proc Biol Sci , vol.281 , pp. 20132502
    • Amarasinghe, H.E.1    Clayton, C.I.2    Mallon, E.B.3
  • 46
    • 84937915611 scopus 로고    scopus 로고
    • Allele specific expression in worker reproduction genes in the bumblebee Bombus terrestris
    • 26213649, .;:.
    • Amarasinghe HE, Toghill BJ, Nathanael D, Mallon EB, Allele specific expression in worker reproduction genes in the bumblebee Bombus terrestris. PeerJ. 2015;3:e1079. doi: 10.7717/peerj.107926213649
    • (2015) PeerJ , vol.3 , pp. e1079
    • Amarasinghe, H.E.1    Toghill, B.J.2    Nathanael, D.3    Mallon, E.B.4
  • 48
    • 84904471219 scopus 로고    scopus 로고
    • Using next-generation RNA sequencing to identify imprinted genes
    • .;:–.
    • Wang X, Clark AG, Using next-generation RNA sequencing to identify imprinted genes. Heredity (Edinb). 2014;113:156–166.
    • (2014) Heredity (Edinb) , vol.113 , pp. 156-166
    • Wang, X.1    Clark, A.G.2
  • 49
    • 0035839126 scopus 로고    scopus 로고
    • Epigenetic reprogramming in mammalian development
    • 11498579, .;:–.
    • Reik W, Dean W, Walter J, Epigenetic reprogramming in mammalian development. Science. 2001;293:1089–1093. 11498579
    • (2001) Science , vol.293 , pp. 1089-1093
    • Reik, W.1    Dean, W.2    Walter, J.3
  • 50
    • 84883202034 scopus 로고    scopus 로고
    • Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray
    • ..;:–.
    • Desjardins CA, Gadau J, Lopez JA, Niehuis O, Avery AR, et al. Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray. G3 (Bethesda). 2013;3:205–215.
    • (2013) G3 (Bethesda) , vol.3 , pp. 205-215
    • Desjardins, C.A.1    Gadau, J.2    Lopez, J.A.3    Niehuis, O.4    Avery, A.R.5
  • 51
    • 84904470794 scopus 로고    scopus 로고
    • The evolution of genomic imprinting: theories, predictions and empirical tests
    • ..;:–.
    • Patten MM, Ross L, Curley JP, Queller DC, Bonduriansky R, et al. The evolution of genomic imprinting: theories, predictions and empirical tests. Heredity (Edinb). 2014;113:119–128.
    • (2014) Heredity (Edinb) , vol.113 , pp. 119-128
    • Patten, M.M.1    Ross, L.2    Curley, J.P.3    Queller, D.C.4    Bonduriansky, R.5
  • 52
    • 84960854474 scopus 로고    scopus 로고
    • Differentially methylated obligatory epialleles modulate context-dependent LAM gene expression in the honeybee Apis mellifera
    • .:–.
    • Wedd L, Kucharski R, Maleszka R, Differentially methylated obligatory epialleles modulate context-dependent LAM gene expression in the honeybee Apis mellifera. Epigenetics. 2015:1–10.
    • (2015) Epigenetics , pp. 1-10
    • Wedd, L.1    Kucharski, R.2    Maleszka, R.3
  • 53
    • 84960347679 scopus 로고    scopus 로고
    • Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation
    • 26969617, ..;:.
    • Remnant EJ, Ashe A, Young PE, Buchmann G, Beekman M, et al. Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation. BMC Genomics. 2016;17:226. doi: 10.1186/s12864-016-2506-826969617
    • (2016) BMC Genomics , vol.17 , pp. 226
    • Remnant, E.J.1    Ashe, A.2    Young, P.E.3    Buchmann, G.4    Beekman, M.5
  • 54
    • 0001171405 scopus 로고    scopus 로고
    • Differences in mating behaviour and sex ratio between three sibling species of Nasonia
    • .;:–.
    • Drapeau MD, Werren JH, Differences in mating behaviour and sex ratio between three sibling species of Nasonia. Evolutionary Ecology Research. 1999;1:223–234.
    • (1999) Evolutionary Ecology Research , vol.1 , pp. 223-234
    • Drapeau, M.D.1    Werren, J.H.2
  • 56
    • 84856990498 scopus 로고    scopus 로고
    • Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation
    • 22323818, .;:–.
    • Song J, Teplova M, Ishibe-Murakami S, Patel DJ, Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation. Science. 2012;335:709–712. doi: 10.1126/science.121445322323818
    • (2012) Science , vol.335 , pp. 709-712
    • Song, J.1    Teplova, M.2    Ishibe-Murakami, S.3    Patel, D.J.4
  • 57
    • 84876325712 scopus 로고    scopus 로고
    • Primordial germ-cell development and epigenetic reprogramming in mammals
    • 23587241, .;:–.
    • Leitch HG, Tang WW, Surani MA, Primordial germ-cell development and epigenetic reprogramming in mammals. Curr Top Dev Biol. 2013;104:149–187. doi: 10.1016/B978-0-12-416027-9.00005-X23587241
    • (2013) Curr Top Dev Biol , vol.104 , pp. 149-187
    • Leitch, H.G.1    Tang, W.W.2    Surani, M.A.3
  • 59
    • 3042854695 scopus 로고    scopus 로고
    • Epigenetic reprogramming during early development in mammals
    • 15175501, .;:–.
    • Santos F, Dean W, Epigenetic reprogramming during early development in mammals. Reproduction. 2004;127:643–651. 15175501
    • (2004) Reproduction , vol.127 , pp. 643-651
    • Santos, F.1    Dean, W.2
  • 60
    • 0036733675 scopus 로고    scopus 로고
    • Chromatin modification and epigenetic reprogramming in mammalian development
    • 12209141, .;:–.
    • Li E, Chromatin modification and epigenetic reprogramming in mammalian development. Nat Rev Genet. 2002;3:662–673. 12209141
    • (2002) Nat Rev Genet , vol.3 , pp. 662-673
    • Li, E.1
  • 61
    • 38349100549 scopus 로고    scopus 로고
    • Epigenetic events in mammalian germ-cell development: reprogramming and beyond
    • 18197165, .;:–.
    • Sasaki H, Matsui Y, Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat Rev Genet. 2008;9:129–140. doi: 10.1038/nrg229518197165
    • (2008) Nat Rev Genet , vol.9 , pp. 129-140
    • Sasaki, H.1    Matsui, Y.2
  • 62
    • 84897139220 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance: myths and mechanisms
    • 24679529, .;:–.
    • Heard E, Martienssen RA, Transgenerational epigenetic inheritance: myths and mechanisms. Cell. 2014;157:95–109. doi: 10.1016/j.cell.2014.02.04524679529
    • (2014) Cell , vol.157 , pp. 95-109
    • Heard, E.1    Martienssen, R.A.2
  • 63
    • 84867390947 scopus 로고    scopus 로고
    • Epialleles in plant evolution
    • 23058244, .;:.
    • Weigel D, Colot V, Epialleles in plant evolution. Genome Biol. 2012;13:249. doi: 10.1186/gb-2012-13-10-24923058244
    • (2012) Genome Biol , vol.13 , pp. 249
    • Weigel, D.1    Colot, V.2
  • 64
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • 20142834, .;:–.
    • Law JA, Jacobsen SE, Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010;11:204–220. doi: 10.1038/nrg271920142834
    • (2010) Nat Rev Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 65
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
    • 21779025, .;:–.
    • Haag JR, Pikaard CS, Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol. 2011;12:483–492. doi: 10.1038/nrm315221779025
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 66
    • 84904262403 scopus 로고    scopus 로고
    • The chromatin landscape of Drosophila: comparisons between species, sexes, and chromosomes
    • 24840603, .;:–.
    • Brown EJ, Bachtrog D, The chromatin landscape of Drosophila: comparisons between species, sexes, and chromosomes. Genome Res. 2014;24:1125–1137. doi: 10.1101/gr.172155.11424840603
    • (2014) Genome Res , vol.24 , pp. 1125-1137
    • Brown, E.J.1    Bachtrog, D.2
  • 67
    • 84982853903 scopus 로고    scopus 로고
    • Andrews S FastQC A Quality Control tool for High Throughput Sequence Data.
    • Andrews S FastQC A Quality Control tool for High Throughput Sequence Data.
  • 68
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: a flexible trimmer for Illumina sequence data
    • 24695404, .;:–.
    • Bolger AM, Lohse M, Usadel B, Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–2120. doi: 10.1093/bioinformatics/btu17024695404
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 69
    • 74549184089 scopus 로고    scopus 로고
    • Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    • 20075255, ..;:–.
    • Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science. 2010;327:343–348. doi: 10.1126/science.117802820075255
    • (2010) Science , vol.327 , pp. 343-348
    • Werren, J.H.1    Richards, S.2    Desjardins, C.A.3    Niehuis, O.4    Gadau, J.5
  • 70
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • 23618408, ..;:.
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013;14:R36. doi: 10.1186/gb-2013-14-4-r3623618408
    • (2013) Genome Biol , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5
  • 71
    • 78651276632 scopus 로고    scopus 로고
    • Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera
    • 21071397, ..;:–.
    • Munoz-Torres MC, Reese JT, Childers CP, Bennett AK, Sundaram JP, et al. Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera. Nucleic Acids Res. 2011;39:D658–662. doi: 10.1093/nar/gkq114521071397
    • (2011) Nucleic Acids Res , vol.39 , pp. D658-662
    • Munoz-Torres, M.C.1    Reese, J.T.2    Childers, C.P.3    Bennett, A.K.4    Sundaram, J.P.5
  • 72
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • 22383036, ..;:–.
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012;7:562–578. doi: 10.1038/nprot.2012.01622383036
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5
  • 73
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq—A Python framework to work with high-throughput sequencing data
    • 25260700, .;:–.
    • Anders S, Pyl PT, Huber W, HTSeq—A Python framework to work with high-throughput sequencing data. Bioinformatics. 2015;31:166–169. doi: 10.1093/bioinformatics/btu63825260700
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 74
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • 20110278, .;:–.
    • Quinlan AR, Hall IM, BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010;26:841–842. doi: 10.1093/bioinformatics/btq03320110278
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 75
    • 84921425131 scopus 로고    scopus 로고
    • edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology
    • 24743990, .;:–.
    • Nikolayeva O, Robinson MD, edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology. Methods Mol Biol. 2014;1150:45–79. doi: 10.1007/978-1-4939-0512-6_324743990
    • (2014) Methods Mol Biol , vol.1150 , pp. 45-79
    • Nikolayeva, O.1    Robinson, M.D.2
  • 76
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • 19910308, .;:–.
    • Robinson MD, McCarthy DJ, Smyth GK, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26:139–140. doi: 10.1093/bioinformatics/btp61619910308
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 77
    • 84982095940 scopus 로고    scopus 로고
    • .:.; pp.–.
    • McDonald JH, Repeated G-tests of goodness-of-fit. Handbook of biological statistics. 3rd ed: Sparky House PublishingBaltimore, MD. 2014; pp. 90–93.
    • (2014) Handbook of biological statistics , pp. 90-93
    • McDonald, J.H.1
  • 78
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • 19451168, .;:–.
    • Li H, Durbin R, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754–1760. doi: 10.1093/bioinformatics/btp32419451168
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 79
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
    • 22517427, .;:–.
    • Thorvaldsdottir H, Robinson JT, Mesirov JP, Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2013;14:178–192. doi: 10.1093/bib/bbs01722517427
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.