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Volumn 110, Issue 21, 2013, Pages 8627-8631

Dnmt2-dependent methylomes lack defined DNA methylation patterns

Author keywords

Epigenetics; RNA methylation

Indexed keywords

CYTOSINE; DNA METHYLTRANSFERASE; DNA METHYLTRANSFERASE 2; UNCLASSIFIED DRUG;

EID: 84878136507     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1306723110     Document Type: Article
Times cited : (183)

References (42)
  • 1
    • 61349117970 scopus 로고    scopus 로고
    • Genetics and epigenetics: Stability and plasticity during cellular differentiation
    • Mohn F, Schübeler D (2009) Genetics and epigenetics: Stability and plasticity during cellular differentiation. Trends Genet 25(3): 129-136.
    • (2009) Trends Genet , vol.25 , Issue.3 , pp. 129-136
    • Mohn, F.1    Schübeler, D.2
  • 2
    • 34249275353 scopus 로고    scopus 로고
    • Phenotypic plasticity and the epigenetics of human disease
    • Feinberg AP (2007) Phenotypic plasticity and the epigenetics of human disease. Nature 447(7143): 433-440.
    • (2007) Nature , vol.447 , Issue.7143 , pp. 433-440
    • Feinberg, A.P.1
  • 3
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • Goll MG, Bestor TH (2005) Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74: 481-514.
    • (2005) Annu Rev Biochem , vol.74 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 4
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11(3): 204-220.
    • (2010) Nat Rev Genet , vol.11 , Issue.3 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 5
    • 0031964577 scopus 로고    scopus 로고
    • A candidate mammalian DNA methyltransferase related to pmt1p of fission yeast
    • Yoder JA, Bestor TH (1998) A candidate mammalian DNA methyltransferase related to pmt1p of fission yeast. Hum Mol Genet 7(2): 279-284.
    • (1998) Hum Mol Genet , vol.7 , Issue.2 , pp. 279-284
    • Yoder, J.A.1    Bestor, T.H.2
  • 6
    • 0032102949 scopus 로고    scopus 로고
    • Dnmt2 is not required for de novo and maintenance methylation of viral DNA in embryonic stem cells
    • Okano M, Xie S, Li E (1998) Dnmt2 is not required for de novo and maintenance methylation of viral DNA in embryonic stem cells. Nucleic Acids Res 26(11): 2536-2540.
    • (1998) Nucleic Acids Res , vol.26 , Issue.11 , pp. 2536-2540
    • Okano, M.1    Xie, S.2    Li, E.3
  • 7
    • 0035863850 scopus 로고    scopus 로고
    • Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA
    • Dong A, et al. (2001) Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA. Nucleic Acids Res 29(2): 439-448.
    • (2001) Nucleic Acids Res , vol.29 , Issue.2 , pp. 439-448
    • Dong, A.1
  • 8
    • 0041355334 scopus 로고    scopus 로고
    • The human Dnmt2 has residual DNA-(cytosine- C5) methyltransferase activity
    • Hermann A, Schmitt S, Jeltsch A (2003) The human Dnmt2 has residual DNA-(cytosine- C5) methyltransferase activity. J Biol Chem 278(34): 31717-31721.
    • (2003) J Biol Chem , vol.278 , Issue.34 , pp. 31717-31721
    • Hermann, A.1    Schmitt, S.2    Jeltsch, A.3
  • 9
    • 31144449613 scopus 로고    scopus 로고
    • Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2
    • Goll MG, et al. (2006) Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 311(5759): 395-398.
    • (2006) Science , vol.311 , Issue.5759 , pp. 395-398
    • Goll, M.G.1
  • 10
    • 77955884641 scopus 로고    scopus 로고
    • RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
    • Schaefer M, et al. (2010) RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev 24(15): 1590-1595.
    • (2010) Genes Dev , vol.24 , Issue.15 , pp. 1590-1595
    • Schaefer, M.1
  • 11
    • 47949107313 scopus 로고    scopus 로고
    • Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanism
    • Jurkowski TP, et al. (2008) Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanism. RNA 14(8): 1663-1670.
    • (2008) RNA , vol.14 , Issue.8 , pp. 1663-1670
    • Jurkowski, T.P.1
  • 12
    • 52949092370 scopus 로고    scopus 로고
    • Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes
    • Sunita S, et al. (2008) Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes. J Mol Biol 383(3): 652-666.
    • (2008) J Mol Biol , vol.383 , Issue.3 , pp. 652-666
    • Sunita, S.1
  • 13
    • 79955072337 scopus 로고    scopus 로고
    • Natural history of eukaryotic DNA methylation systems
    • Iyer LM, Abhiman S, Aravind L (2011) Natural history of eukaryotic DNA methylation systems. Prog Mol Biol Transl Sci 101: 25-104.
    • (2011) Prog Mol Biol Transl Sci , vol.101 , pp. 25-104
    • Iyer, L.M.1    Abhiman, S.2    Aravind, L.3
  • 14
    • 82355183876 scopus 로고    scopus 로고
    • On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2
    • Jurkowski TP, Jeltsch A (2011) On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2. PLoS ONE 6(11):e28104.
    • (2011) PLoS ONE , vol.6 , Issue.11
    • Jurkowski, T.P.1    Jeltsch, A.2
  • 15
    • 77956504685 scopus 로고    scopus 로고
    • Evolution of eukaryotic DNA methylation and the pursuit of safer sex
    • Zemach A, Zilberman D (2010) Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr Biol 20(17):R780-R785.
    • (2010) Curr Biol , vol.20 , Issue.17
    • Zemach, A.1    Zilberman, D.2
  • 16
    • 74549184089 scopus 로고    scopus 로고
    • Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    • Nasonia Genome Working Group
    • Werren JH, et al.; Nasonia Genome Working Group (2010) Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 327(5963): 343-348.
    • (2010) Science , vol.327 , Issue.5963 , pp. 343-348
    • Werren, J.H.1
  • 17
    • 79953061203 scopus 로고    scopus 로고
    • Insects as innovative models for functional studies of DNA methylation
    • Lyko F, Maleszka R (2011) Insects as innovative models for functional studies of DNA methylation. Trends Genet 27(4): 127-131.
    • (2011) Trends Genet , vol.27 , Issue.4 , pp. 127-131
    • Lyko, F.1    Maleszka, R.2
  • 18
    • 84866074106 scopus 로고    scopus 로고
    • RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
    • Tuorto F, et al. (2012) RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol 19(9): 900-905.
    • (2012) Nat Struct Mol Biol , vol.19 , Issue.9 , pp. 900-905
    • Tuorto, F.1
  • 19
    • 84871235870 scopus 로고    scopus 로고
    • Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling
    • Becker M, et al. (2012) Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling. Nucleic Acids Res 40(22): 11648-11658.
    • (2012) Nucleic Acids Res , vol.40 , Issue.22 , pp. 11648-11658
    • Becker, M.1
  • 20
    • 33745253953 scopus 로고    scopus 로고
    • Two substrates are better than one: Dual specificities for Dnmt2 methyltransferases
    • Jeltsch A, Nellen W, Lyko F (2006) Two substrates are better than one: Dual specificities for Dnmt2 methyltransferases. Trends Biochem Sci 31(6): 306-308.
    • (2006) Trends Biochem Sci , vol.31 , Issue.6 , pp. 306-308
    • Jeltsch, A.1    Nellen, W.2    Lyko, F.3
  • 21
    • 74049130225 scopus 로고    scopus 로고
    • Solving the Dnmt2 enigma
    • Schaefer M, Lyko F (2010) Solving the Dnmt2 enigma. Chromosoma 119(1): 35-40.
    • (2010) Chromosoma , vol.119 , Issue.1 , pp. 35-40
    • Schaefer, M.1    Lyko, F.2
  • 22
    • 79955061766 scopus 로고    scopus 로고
    • DNA methylation in Drosophila - A critical evaluation
    • Krauss V, Reuter G (2011) DNA methylation in Drosophila - a critical evaluation. Prog Mol Biol Transl Sci 101: 177-191.
    • (2011) Prog Mol Biol Transl Sci , vol.101 , pp. 177-191
    • Krauss, V.1    Reuter, G.2
  • 23
    • 80052404096 scopus 로고    scopus 로고
    • Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni
    • Geyer KK, et al. (2011) Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni. Nat Commun 2:424.
    • (2011) Nat Commun , vol.2 , pp. 424
    • Geyer, K.K.1
  • 24
    • 67349217819 scopus 로고    scopus 로고
    • Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2
    • Phalke S, et al. (2009) Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2. Nat Genet 41(6): 696-702.
    • (2009) Nat Genet , vol.41 , Issue.6 , pp. 696-702
    • Phalke, S.1
  • 25
    • 66449121652 scopus 로고    scopus 로고
    • Finding the fifth base: Genome-wide sequencing of cytosine methylation
    • Lister R, Ecker JR (2009) Finding the fifth base: Genome-wide sequencing of cytosine methylation. Genome Res 19(6): 959-966.
    • (2009) Genome Res , vol.19 , Issue.6 , pp. 959-966
    • Lister, R.1    Ecker, J.R.2
  • 26
    • 77952734605 scopus 로고    scopus 로고
    • Conservation and divergence of methylation patterning in plants and animals
    • Feng S, et al. (2010) Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 107(19): 8689-8694.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.19 , pp. 8689-8694
    • Feng, S.1
  • 27
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328(5980): 916-919.
    • (2010) Science , vol.328 , Issue.5980 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 28
    • 33745270104 scopus 로고    scopus 로고
    • Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b
    • Tsumura A, et al. (2006) Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b. Genes Cells 11(7): 805-814.
    • (2006) Genes Cells , vol.11 , Issue.7 , pp. 805-814
    • Tsumura, A.1
  • 29
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: Whole genome bisulfite sequence MAPping program
    • Xi Y, Li W (2009) BSMAP: Whole genome bisulfite sequence MAPping program. BMC Bioinformatics 10:232.
    • (2009) BMC Bioinformatics , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 30
    • 78649955848 scopus 로고    scopus 로고
    • The honey bee epigenomes: Differential methylation of brain DNA in queens and workers
    • Lyko F, et al. (2010) The honey bee epigenomes: Differential methylation of brain DNA in queens and workers. PLoS Biol 8(11):e1000506.
    • (2010) PLoS Biol , vol.8 , Issue.11
    • Lyko, F.1
  • 31
    • 0036311202 scopus 로고    scopus 로고
    • Identification and resolution of artifacts in bisulfite sequencing
    • Warnecke PM, et al. (2002) Identification and resolution of artifacts in bisulfite sequencing. Methods 27(2): 101-107.
    • (2002) Methods , vol.27 , Issue.2 , pp. 101-107
    • Warnecke, P.M.1
  • 32
    • 80052937538 scopus 로고    scopus 로고
    • Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
    • Molaro A, et al. (2011) Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 146(6): 1029-1041.
    • (2011) Cell , vol.146 , Issue.6 , pp. 1029-1041
    • Molaro, A.1
  • 33
    • 84355163093 scopus 로고    scopus 로고
    • DNA-binding factors shape the mouse methylome at distal regulatory regions
    • Stadler MB, et al. (2011) DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480(7378): 490-495.
    • (2011) Nature , vol.480 , Issue.7378 , pp. 490-495
    • Stadler, M.B.1
  • 34
    • 0034625064 scopus 로고    scopus 로고
    • Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a
    • Ramsahoye BH, et al. (2000) Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc Natl Acad Sci USA 97(10): 5237-5242.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.10 , pp. 5237-5242
    • Ramsahoye, B.H.1
  • 35
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462(7271): 315-322.
    • (2009) Nature , vol.462 , Issue.7271 , pp. 315-322
    • Lister, R.1
  • 36
    • 0034672095 scopus 로고    scopus 로고
    • DNA of Drosophila melanogaster contains 5-methylcytosine
    • Gowher H, Leismann O, Jeltsch A (2000) DNA of Drosophila melanogaster contains 5-methylcytosine. EMBO J 19(24): 6918-6923.
    • (2000) EMBO J , vol.19 , Issue.24 , pp. 6918-6923
    • Gowher, H.1    Leismann, O.2    Jeltsch, A.3
  • 37
    • 0034735780 scopus 로고    scopus 로고
    • DNA methylation in Drosophila melanogaster
    • Lyko F, Ramsahoye BH, Jaenisch R (2000) DNA methylation in Drosophila melanogaster. Nature 408(6812): 538-540.
    • (2000) Nature , vol.408 , Issue.6812 , pp. 538-540
    • Lyko, F.1    Ramsahoye, B.H.2    Jaenisch, R.3
  • 38
    • 0242550723 scopus 로고    scopus 로고
    • A Dnmt2-like protein mediates DNA methylation in Drosophila
    • Kunert N, Marhold J, Stanke J, Stach D, Lyko F (2003) A Dnmt2-like protein mediates DNA methylation in Drosophila. Development 130(21): 5083-5090.
    • (2003) Development , vol.130 , Issue.21 , pp. 5083-5090
    • Kunert, N.1    Marhold, J.2    Stanke, J.3    Stach, D.4    Lyko, F.5
  • 39
    • 0030697141 scopus 로고    scopus 로고
    • Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
    • Warnecke PM, et al. (1997) Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA. Nucleic Acids Res 25(21): 4422-4426.
    • (1997) Nucleic Acids Res , vol.25 , Issue.21 , pp. 4422-4426
    • Warnecke, P.M.1
  • 40
    • 78651234087 scopus 로고    scopus 로고
    • The DNA methyltranferase Dnmt2 participates in RNA processing during cellular stress
    • Thiagarajan D, Dev RR, Khosla S (2011) The DNA methyltranferase Dnmt2 participates in RNA processing during cellular stress. Epigenetics 6(1): 103-113.
    • (2011) Epigenetics , vol.6 , Issue.1 , pp. 103-113
    • Thiagarajan, D.1    Dev, R.R.2    Khosla, S.3
  • 41
    • 84874659838 scopus 로고    scopus 로고
    • Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2
    • Durdevic Z, et al. (2013) Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2. EMBO Rep 14(3): 269-275.
    • (2013) EMBO Rep , vol.14 , Issue.3 , pp. 269-275
    • Durdevic, Z.1
  • 42
    • 79956323623 scopus 로고    scopus 로고
    • Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
    • Ficz G, et al. (2011) Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 473(7347): 398-402.
    • (2011) Nature , vol.473 , Issue.7347 , pp. 398-402
    • Ficz, G.1


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