-
1
-
-
78650907809
-
Bypassing of stems versus linear base-by-base inspection of mammalian mRNAs during ribosomal scanning
-
Abaeva, I.S., Marintchev, A., Pisareva, V.P., Hellen, C.U., Pestova, T.V., Bypassing of stems versus linear base-by-base inspection of mammalian mRNAs during ribosomal scanning. EMBO J. 30 (2011), 115–129.
-
(2011)
EMBO J.
, vol.30
, pp. 115-129
-
-
Abaeva, I.S.1
Marintchev, A.2
Pisareva, V.P.3
Hellen, C.U.4
Pestova, T.V.5
-
2
-
-
84887238690
-
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
-
Abrishami, V., Zaldívar-Peraza, A., de la Rosa-Trevín, J.M., Vargas, J., Otón, J., Marabini, R., Shkolnisky, Y., Carazo, J.M., Sorzano, C.O., A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinformatics 29 (2013), 2460–2468.
-
(2013)
Bioinformatics
, vol.29
, pp. 2460-2468
-
-
Abrishami, V.1
Zaldívar-Peraza, A.2
de la Rosa-Trevín, J.M.3
Vargas, J.4
Otón, J.5
Marabini, R.6
Shkolnisky, Y.7
Carazo, J.M.8
Sorzano, C.O.9
-
3
-
-
84923447206
-
Alignment of direct detection device micrographs using a robust Optical Flow approach
-
Abrishami, V., Vargas, J., Li, X., Cheng, Y., Marabini, R., Sorzano, C.Ó., Carazo, J.M., Alignment of direct detection device micrographs using a robust Optical Flow approach. J. Struct. Biol. 189 (2015), 163–176.
-
(2015)
J. Struct. Biol.
, vol.189
, pp. 163-176
-
-
Abrishami, V.1
Vargas, J.2
Li, X.3
Cheng, Y.4
Marabini, R.5
Sorzano, C.Ó.6
Carazo, J.M.7
-
4
-
-
0026541436
-
Analysis of 40 S and 80 S complexes with mRNA as measured by sucrose density gradients and primer extension inhibition
-
Anthony, D.D., Merrick, W.C., Analysis of 40 S and 80 S complexes with mRNA as measured by sucrose density gradients and primer extension inhibition. J. Biol. Chem. 267 (1992), 1554–1562.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 1554-1562
-
-
Anthony, D.D.1
Merrick, W.C.2
-
5
-
-
32144432437
-
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J., Schwede, T., The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22 (2006), 195–201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
6
-
-
0032541138
-
Complex formation by all five homologues of mammalian translation initiation factor 3 subunits from yeast Saccharomyces cerevisiae
-
Asano, K., Phan, L., Anderson, J., Hinnebusch, A.G., Complex formation by all five homologues of mammalian translation initiation factor 3 subunits from yeast Saccharomyces cerevisiae. J. Biol. Chem. 273 (1998), 18573–18585.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 18573-18585
-
-
Asano, K.1
Phan, L.2
Anderson, J.3
Hinnebusch, A.G.4
-
7
-
-
84924262489
-
Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex
-
Aylett, C.H., Boehringer, D., Erzberger, J.P., Schaefer, T., Ban, N., Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex. Nat. Struct. Mol. Biol. 22 (2015), 269–271.
-
(2015)
Nat. Struct. Mol. Biol.
, vol.22
, pp. 269-271
-
-
Aylett, C.H.1
Boehringer, D.2
Erzberger, J.P.3
Schaefer, T.4
Ban, N.5
-
8
-
-
84866269021
-
Near-atomic resolution structural model of the yeast 26S proteasome
-
Beck, F., Unverdorben, P., Bohn, S., Schweitzer, A., Pfeifer, G., Sakata, E., Nickell, S., Plitzko, J.M., Villa, E., Baumeister, W., Förster, F., Near-atomic resolution structural model of the yeast 26S proteasome. Proc. Natl. Acad. Sci. U S A 109 (2012), 14870–14875.
-
(2012)
Proc. Natl. Acad. Sci. U S A
, vol.109
, pp. 14870-14875
-
-
Beck, F.1
Unverdorben, P.2
Bohn, S.3
Schweitzer, A.4
Pfeifer, G.5
Sakata, E.6
Nickell, S.7
Plitzko, J.M.8
Villa, E.9
Baumeister, W.10
Förster, F.11
-
9
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 Å resolution
-
Ben-Shem, A., Garreau de Loubresse, N., Melnikov, S., Jenner, L., Yusupova, G., Yusupov, M., The structure of the eukaryotic ribosome at 3.0 Å resolution. Science 334 (2011), 1524–1529.
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau de Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
10
-
-
84986512474
-
CHARMM: a program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B.R., Bruccoleri, R.E., Olafson, B., Karplus, M., CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4 (1983), 187–217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.3
Karplus, M.4
-
11
-
-
85006371450
-
Purification of mRNA-programmed translation initiation complexes suitable for mass spectrometry analysis
-
Chicher, J., Simonetti, A., Kuhn, L., Schaeffer, L., Hammann, P., Eriani, G., Martin, F., Purification of mRNA-programmed translation initiation complexes suitable for mass spectrometry analysis. Proteomics 15 (2015), 2417–2425.
-
(2015)
Proteomics
, vol.15
, pp. 2417-2425
-
-
Chicher, J.1
Simonetti, A.2
Kuhn, L.3
Schaeffer, L.4
Hammann, P.5
Eriani, G.6
Martin, F.7
-
12
-
-
84887257621
-
Xmipp 3.0: one step forward in scientific computing for electron microscopy
-
de la Rosa-Trevín, J.M., Otón, J., Marabini, R., Zaldívar, A., Vargas, J., Carazo, J.M., Sorzano, C.O., Xmipp 3.0: one step forward in scientific computing for electron microscopy. J. Struct. Biol. 184 (2013), 321–328.
-
(2013)
J. Struct. Biol.
, vol.184
, pp. 321-328
-
-
de la Rosa-Trevín, J.M.1
Otón, J.2
Marabini, R.3
Zaldívar, A.4
Vargas, J.5
Carazo, J.M.6
Sorzano, C.O.7
-
13
-
-
84942531804
-
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
-
des Georges, A., Dhote, V., Kuhn, L., Hellen, C.U., Pestova, T.V., Frank, J., Hashem, Y., Structure of mammalian eIF3 in the context of the 43S preinitiation complex. Nature 525 (2015), 491–495.
-
(2015)
Nature
, vol.525
, pp. 491-495
-
-
des Georges, A.1
Dhote, V.2
Kuhn, L.3
Hellen, C.U.4
Pestova, T.V.5
Frank, J.6
Hashem, Y.7
-
14
-
-
84869227939
-
Roles of individual domains in the function of DHX29, an essential factor required for translation of structured mammalian mRNAs
-
Dhote, V., Sweeney, T.R., Kim, N., Hellen, C.U., Pestova, T.V., Roles of individual domains in the function of DHX29, an essential factor required for translation of structured mammalian mRNAs. Proc. Natl. Acad. Sci. U S A 109 (2012), E3150–E3159.
-
(2012)
Proc. Natl. Acad. Sci. U S A
, vol.109
, pp. E3150-E3159
-
-
Dhote, V.1
Sweeney, T.R.2
Kim, N.3
Hellen, C.U.4
Pestova, T.V.5
-
15
-
-
34247241059
-
Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit
-
ElAntak, L., Tzakos, A.G., Locker, N., Lukavsky, P.J., Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit. J. Biol. Chem. 282 (2007), 8165–8174.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 8165-8174
-
-
ElAntak, L.1
Tzakos, A.G.2
Locker, N.3
Lukavsky, P.J.4
-
16
-
-
77449146854
-
Target-decoy search strategy for mass spectrometry-based proteomics
-
Elias, J.E., Gygi, S.P., Target-decoy search strategy for mass spectrometry-based proteomics. Methods Mol. Biol. 604 (2010), 55–71.
-
(2010)
Methods Mol. Biol.
, vol.604
, pp. 55-71
-
-
Elias, J.E.1
Gygi, S.P.2
-
17
-
-
84907323467
-
Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex
-
Erzberger, J.P., Stengel, F., Pellarin, R., Zhang, S., Schaefer, T., Aylett, C.H., Cimermančič, P., Boehringer, D., Sali, A., Aebersold, R., Ban, N., Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex. Cell 158 (2014), 1123–1135.
-
(2014)
Cell
, vol.158
, pp. 1123-1135
-
-
Erzberger, J.P.1
Stengel, F.2
Pellarin, R.3
Zhang, S.4
Schaefer, T.5
Aylett, C.H.6
Cimermančič, P.7
Boehringer, D.8
Sali, A.9
Aebersold, R.10
Ban, N.11
-
18
-
-
84887101681
-
Molecular architecture of a eukaryotic translational initiation complex
-
Fernández, I.S., Bai, X.C., Hussain, T., Kelley, A.C., Lorsch, J.R., Ramakrishnan, V., Scheres, S.H., Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 2013, 1240585.
-
(2013)
Science
, vol.342
, pp. 1240585
-
-
Fernández, I.S.1
Bai, X.C.2
Hussain, T.3
Kelley, A.C.4
Lorsch, J.R.5
Ramakrishnan, V.6
Scheres, S.H.7
-
19
-
-
1542305510
-
The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro
-
Fraser, C.S., Lee, J.Y., Mayeur, G.L., Bushell, M., Doudna, J.A., Hershey, J.W., The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro. J. Biol. Chem. 279 (2004), 8946–8956.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 8946-8956
-
-
Fraser, C.S.1
Lee, J.Y.2
Mayeur, G.L.3
Bushell, M.4
Doudna, J.A.5
Hershey, J.W.6
-
20
-
-
33646443228
-
A library of RNA bridges
-
Gao, N., Frank, J., A library of RNA bridges. Nat. Chem. Biol. 2 (2006), 231–232.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 231-232
-
-
Gao, N.1
Frank, J.2
-
21
-
-
84908546298
-
Structural basis for the inhibition of the eukaryotic ribosome
-
Garreau de Loubresse, N., Prokhorova, I., Holtkamp, W., Rodnina, M.V., Yusupova, G., Yusupov, M., Structural basis for the inhibition of the eukaryotic ribosome. Nature 513 (2014), 517–522.
-
(2014)
Nature
, vol.513
, pp. 517-522
-
-
Garreau de Loubresse, N.1
Prokhorova, I.2
Holtkamp, W.3
Rodnina, M.V.4
Yusupova, G.5
Yusupov, M.6
-
22
-
-
0028059555
-
Iron regulatory protein prevents binding of the 43S translation pre-initiation complex to ferritin and eALAS mRNAs
-
Gray, N.K., Hentze, M.W., Iron regulatory protein prevents binding of the 43S translation pre-initiation complex to ferritin and eALAS mRNAs. EMBO J. 13 (1994), 3882–3891.
-
(1994)
EMBO J.
, vol.13
, pp. 3882-3891
-
-
Gray, N.K.1
Hentze, M.W.2
-
23
-
-
84878333225
-
Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29
-
Hashem, Y., des Georges, A., Dhote, V., Langlois, R., Liao, H.Y., Grassucci, R.A., Hellen, C.U., Pestova, T.V., Frank, J., Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29. Cell 153 (2013), 1108–1119.
-
(2013)
Cell
, vol.153
, pp. 1108-1119
-
-
Hashem, Y.1
des Georges, A.2
Dhote, V.3
Langlois, R.4
Liao, H.Y.5
Grassucci, R.A.6
Hellen, C.U.7
Pestova, T.V.8
Frank, J.9
-
24
-
-
84863338242
-
Structural analysis of an eIF3 subcomplex reveals conserved interactions required for a stable and proper translation pre-initiation complex assembly
-
Herrmannová, A., Daujotyte, D., Yang, J.C., Cuchalová, L., Gorrec, F., Wagner, S., Dányi, I., Lukavsky, P.J., Valásek, L.S., Structural analysis of an eIF3 subcomplex reveals conserved interactions required for a stable and proper translation pre-initiation complex assembly. Nucleic Acids Res. 40 (2012), 2294–2311.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2294-2311
-
-
Herrmannová, A.1
Daujotyte, D.2
Yang, J.C.3
Cuchalová, L.4
Gorrec, F.5
Wagner, S.6
Dányi, I.7
Lukavsky, P.J.8
Valásek, L.S.9
-
25
-
-
33748924333
-
eIF3: a versatile scaffold for translation initiation complexes
-
Hinnebusch, A.G., eIF3: a versatile scaffold for translation initiation complexes. Trends Biochem. Sci. 31 (2006), 553–562.
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 553-562
-
-
Hinnebusch, A.G.1
-
26
-
-
84902193122
-
The scanning mechanism of eukaryotic translation initiation
-
Hinnebusch, A.G., The scanning mechanism of eukaryotic translation initiation. Annu. Rev. Biochem. 83 (2014), 779–812.
-
(2014)
Annu. Rev. Biochem.
, vol.83
, pp. 779-812
-
-
Hinnebusch, A.G.1
-
27
-
-
0029878720
-
VMD: visual molecular dynamics
-
27–28
-
Humphrey, W., Dalke, A., Schulten, K., VMD: visual molecular dynamics. J. Mol. Graph. 1 (1996), 33–38 27–28.
-
(1996)
J. Mol. Graph.
, vol.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
28
-
-
84908332647
-
Structural changes enable start codon recognition by the eukaryotic translation initiation complex
-
Hussain, T., Llácer, J.L., Fernández, I.S., Munoz, A., Martin-Marcos, P., Savva, C.G., Lorsch, J.R., Hinnebusch, A.G., Ramakrishnan, V., Structural changes enable start codon recognition by the eukaryotic translation initiation complex. Cell 159 (2014), 597–607.
-
(2014)
Cell
, vol.159
, pp. 597-607
-
-
Hussain, T.1
Llácer, J.L.2
Fernández, I.S.3
Munoz, A.4
Martin-Marcos, P.5
Savva, C.G.6
Lorsch, J.R.7
Hinnebusch, A.G.8
Ramakrishnan, V.9
-
29
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R.J., Hellen, C.U., Pestova, T.V., The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol. 11 (2010), 113–127.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
30
-
-
0347123543
-
GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2
-
Kapp, L.D., Lorsch, J.R., GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2. J. Mol. Biol. 335 (2004), 923–936.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 923-936
-
-
Kapp, L.D.1
Lorsch, J.R.2
-
31
-
-
10644277580
-
Binding of eukaryotic initiation factor 3 to ribosomal 40S subunits and its role in ribosomal dissociation and anti-association
-
Kolupaeva, V.G., Unbehaun, A., Lomakin, I.B., Hellen, C.U., Pestova, T.V., Binding of eukaryotic initiation factor 3 to ribosomal 40S subunits and its role in ribosomal dissociation and anti-association. RNA 11 (2005), 470–486.
-
(2005)
RNA
, vol.11
, pp. 470-486
-
-
Kolupaeva, V.G.1
Unbehaun, A.2
Lomakin, I.B.3
Hellen, C.U.4
Pestova, T.V.5
-
32
-
-
84894623755
-
Quantifying the local resolution of cryo-EM density maps
-
Kucukelbir, A., Sigworth, F.J., Tagare, H.D., Quantifying the local resolution of cryo-EM density maps. Nat. Methods 11 (2014), 63–65.
-
(2014)
Nat. Methods
, vol.11
, pp. 63-65
-
-
Kucukelbir, A.1
Sigworth, F.J.2
Tagare, H.D.3
-
33
-
-
84930655806
-
eIF3 targets cell-proliferation messenger RNAs for translational activation or repression
-
Lee, A.S., Kranzusch, P.J., Cate, J.H., eIF3 targets cell-proliferation messenger RNAs for translational activation or repression. Nature 522 (2015), 111–114.
-
(2015)
Nature
, vol.522
, pp. 111-114
-
-
Lee, A.S.1
Kranzusch, P.J.2
Cate, J.H.3
-
34
-
-
84906238422
-
Crystal structure of the human COP9 signalosome
-
Lingaraju, G.M., Bunker, R.D., Cavadini, S., Hess, D., Hassiepen, U., Renatus, M., Fischer, E.S., Thomä, N.H., Crystal structure of the human COP9 signalosome. Nature 512 (2014), 161–165.
-
(2014)
Nature
, vol.512
, pp. 161-165
-
-
Lingaraju, G.M.1
Bunker, R.D.2
Cavadini, S.3
Hess, D.4
Hassiepen, U.5
Renatus, M.6
Fischer, E.S.7
Thomä, N.H.8
-
35
-
-
84902342066
-
Translation initiation factor eIF3b contains a nine-bladed β-propeller and interacts with the 40S ribosomal subunit
-
Liu, Y., Neumann, P., Kuhle, B., Monecke, T., Schell, S., Chari, A., Ficner, R., Translation initiation factor eIF3b contains a nine-bladed β-propeller and interacts with the 40S ribosomal subunit. Structure 22 (2014), 923–930.
-
(2014)
Structure
, vol.22
, pp. 923-930
-
-
Liu, Y.1
Neumann, P.2
Kuhle, B.3
Monecke, T.4
Schell, S.5
Chari, A.6
Ficner, R.7
-
36
-
-
84938742519
-
Conformational differences between open and closed states of the eukaryotic translation initiation complex
-
Llácer, J.L., Hussain, T., Marler, L., Aitken, C.E., Thakur, A., Lorsch, J.R., Hinnebusch, A.G., Ramakrishnan, V., Conformational differences between open and closed states of the eukaryotic translation initiation complex. Mol. Cell 59 (2015), 399–412.
-
(2015)
Mol. Cell
, vol.59
, pp. 399-412
-
-
Llácer, J.L.1
Hussain, T.2
Marler, L.3
Aitken, C.E.4
Thakur, A.5
Lorsch, J.R.6
Hinnebusch, A.G.7
Ramakrishnan, V.8
-
37
-
-
84881666192
-
The initiation of mammalian protein synthesis and mRNA scanning mechanism
-
Lomakin, I.B., Steitz, T.A., The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature 500 (2013), 307–311.
-
(2013)
Nature
, vol.500
, pp. 307-311
-
-
Lomakin, I.B.1
Steitz, T.A.2
-
38
-
-
0242714259
-
CHARMM: The Energy Function and Its Parameterization with an Overview of the Program
-
1st ed. John Wiley & Sons Chichester
-
MacKerell, A.D. Jr., Brooks, B., Brooks, C.L., Nilsson, L., Roux, B., Won, Y., Karplus, M., CHARMM: The Energy Function and Its Parameterization with an Overview of the Program. The Encyclopedia of Computational Chemistry, 1st ed., 1998, John Wiley & Sons, Chichester, 271–277.
-
(1998)
The Encyclopedia of Computational Chemistry
, pp. 271-277
-
-
MacKerell, A.D.1
Brooks, B.2
Brooks, C.L.3
Nilsson, L.4
Roux, B.5
Won, Y.6
Karplus, M.7
-
39
-
-
84874310624
-
Coordinated movements of eukaryotic translation initiation factors eIF1, eIF1A, and eIF5 trigger phosphate release from eIF2 in response to start codon recognition by the ribosomal preinitiation complex
-
Nanda, J.S., Saini, A.K., Muñoz, A.M., Hinnebusch, A.G., Lorsch, J.R., Coordinated movements of eukaryotic translation initiation factors eIF1, eIF1A, and eIF5 trigger phosphate release from eIF2 in response to start codon recognition by the ribosomal preinitiation complex. J. Biol. Chem. 288 (2013), 5316–5329.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 5316-5329
-
-
Nanda, J.S.1
Saini, A.K.2
Muñoz, A.M.3
Hinnebusch, A.G.4
Lorsch, J.R.5
-
40
-
-
76049108205
-
The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis
-
Parsyan, A., Shahbazian, D., Martineau, Y., Petroulakis, E., Alain, T., Larsson, O., Mathonnet, G., Tettweiler, G., Hellen, C.U., Pestova, T.V., et al. The helicase protein DHX29 promotes translation initiation, cell proliferation, and tumorigenesis. Proc. Natl. Acad. Sci. U S A 106 (2009), 22217–22222.
-
(2009)
Proc. Natl. Acad. Sci. U S A
, vol.106
, pp. 22217-22222
-
-
Parsyan, A.1
Shahbazian, D.2
Martineau, Y.3
Petroulakis, E.4
Alain, T.5
Larsson, O.6
Mathonnet, G.7
Tettweiler, G.8
Hellen, C.U.9
Pestova, T.V.10
-
41
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M., Cottrell, J.S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20 (1999), 3551–3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
42
-
-
0037112055
-
The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection
-
Pestova, T.V., Kolupaeva, V.G., The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev. 16 (2002), 2906–2922.
-
(2002)
Genes Dev.
, vol.16
, pp. 2906-2922
-
-
Pestova, T.V.1
Kolupaeva, V.G.2
-
43
-
-
0034688313
-
The joining of ribosomal subunits in eukaryotes requires eIF5B
-
Pestova, T.V., Lomakin, I.B., Lee, J.H., Choi, S.K., Dever, T.E., Hellen, C.U., The joining of ribosomal subunits in eukaryotes requires eIF5B. Nature 403 (2000), 332–335.
-
(2000)
Nature
, vol.403
, pp. 332-335
-
-
Pestova, T.V.1
Lomakin, I.B.2
Lee, J.H.3
Choi, S.K.4
Dever, T.E.5
Hellen, C.U.6
-
44
-
-
4444221565
-
UCSF Chimera—a visualization system for exploratory research and analysis
-
Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C., Ferrin, T.E., UCSF Chimera—a visualization system for exploratory research and analysis. J. Comput. Chem. 25 (2004), 1605–1612.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
45
-
-
0035355352
-
A subcomplex of three eIF3 subunits binds eIF1 and eIF5 and stimulates ribosome binding of mRNA and tRNA(i)Met
-
Phan, L., Schoenfeld, L.W., Valásek, L., Nielsen, K.H., Hinnebusch, A.G., A subcomplex of three eIF3 subunits binds eIF1 and eIF5 and stimulates ribosome binding of mRNA and tRNA(i)Met. EMBO J. 20 (2001), 2954–2965.
-
(2001)
EMBO J.
, vol.20
, pp. 2954-2965
-
-
Phan, L.1
Schoenfeld, L.W.2
Valásek, L.3
Nielsen, K.H.4
Hinnebusch, A.G.5
-
46
-
-
77952581453
-
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
-
Pintilie, G.D., Zhang, J., Goddard, T.D., Chiu, W., Gossard, D.C., Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions. J. Struct. Biol. 170 (2010), 427–438.
-
(2010)
J. Struct. Biol.
, vol.170
, pp. 427-438
-
-
Pintilie, G.D.1
Zhang, J.2
Goddard, T.D.3
Chiu, W.4
Gossard, D.C.5
-
47
-
-
57649234552
-
Translation initiation on mammalian mRNAs with structured 5’UTRs requires DExH-box protein DHX29
-
Pisareva, V.P., Pisarev, A.V., Komar, A.A., Hellen, C.U., Pestova, T.V., Translation initiation on mammalian mRNAs with structured 5’UTRs requires DExH-box protein DHX29. Cell 135 (2008), 1237–1250.
-
(2008)
Cell
, vol.135
, pp. 1237-1250
-
-
Pisareva, V.P.1
Pisarev, A.V.2
Komar, A.A.3
Hellen, C.U.4
Pestova, T.V.5
-
48
-
-
84872467534
-
Rapid purification of ribosomal particles assembled on histone H4 mRNA: a new method based on mRNA-DNA chimaeras
-
Prongidi-Fix, L., Schaeffer, L., Simonetti, A., Barends, S., Ménétret, J.F., Klaholz, B.P., Eriani, G., Martin, F., Rapid purification of ribosomal particles assembled on histone H4 mRNA: a new method based on mRNA-DNA chimaeras. Biochem. J. 449 (2013), 719–728.
-
(2013)
Biochem. J.
, vol.449
, pp. 719-728
-
-
Prongidi-Fix, L.1
Schaeffer, L.2
Simonetti, A.3
Barends, S.4
Ménétret, J.F.5
Klaholz, B.P.6
Eriani, G.7
Martin, F.8
-
49
-
-
84946488108
-
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
-
Rohou, A., Grigorieff, N., CTFFIND4: Fast and accurate defocus estimation from electron micrographs. J. Struct. Biol. 192 (2015), 216–221.
-
(2015)
J. Struct. Biol.
, vol.192
, pp. 216-221
-
-
Rohou, A.1
Grigorieff, N.2
-
50
-
-
84868444740
-
RELION: implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres, S.H., RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 180 (2012), 519–530.
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.1
-
51
-
-
77249087063
-
Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin
-
Schneider-Poetsch, T., Ju, J., Eyler, D.E., Dang, Y., Bhat, S., Merrick, W.C., Green, R., Shen, B., Liu, J.O., Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nat. Chem. Biol. 6 (2010), 209–217.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 209-217
-
-
Schneider-Poetsch, T.1
Ju, J.2
Eyler, D.E.3
Dang, Y.4
Bhat, S.5
Merrick, W.C.6
Green, R.7
Shen, B.8
Liu, J.O.9
-
52
-
-
52149112910
-
Structure of the 30S translation initiation complex
-
Simonetti, A., Marzi, S., Myasnikov, A.G., Fabbretti, A., Yusupov, M., Gualerzi, C.O., Klaholz, B.P., Structure of the 30S translation initiation complex. Nature 455 (2008), 416–420.
-
(2008)
Nature
, vol.455
, pp. 416-420
-
-
Simonetti, A.1
Marzi, S.2
Myasnikov, A.G.3
Fabbretti, A.4
Yusupov, M.5
Gualerzi, C.O.6
Klaholz, B.P.7
-
53
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: mechanisms and biological targets
-
Sonenberg, N., Hinnebusch, A.G., Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136 (2009), 731–745.
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
54
-
-
84870493241
-
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
-
Sorzano, C.O., de la Rosa Trevín, J.M., Otón, J., Vega, J.J., Cuenca, J., Zaldívar-Peraza, A., Gómez-Blanco, J., Vargas, J., Quintana, A., Marabini, R., Carazo, J.M., Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy. Methods Mol. Biol. 950 (2013), 171–193.
-
(2013)
Methods Mol. Biol.
, vol.950
, pp. 171-193
-
-
Sorzano, C.O.1
de la Rosa Trevín, J.M.2
Otón, J.3
Vega, J.J.4
Cuenca, J.5
Zaldívar-Peraza, A.6
Gómez-Blanco, J.7
Vargas, J.8
Quintana, A.9
Marabini, R.10
Carazo, J.M.11
-
55
-
-
77954701890
-
Bioinformatics strategies in life sciences: from data processing and data warehousing to biological knowledge extraction
-
Thiele, H., Glandorf, J., Hufnagel, P., Bioinformatics strategies in life sciences: from data processing and data warehousing to biological knowledge extraction. J. Integr. Bioinform., 7, 2010, 141.
-
(2010)
J. Integr. Bioinform.
, vol.7
, pp. 141
-
-
Thiele, H.1
Glandorf, J.2
Hufnagel, P.3
-
56
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco, L.G., Villa, E., Mitra, K., Frank, J., Schulten, K., Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16 (2008), 673–683.
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
57
-
-
10644249220
-
Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP
-
Unbehaun, A., Borukhov, S.I., Hellen, C.U., Pestova, T.V., Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP. Genes Dev. 18 (2004), 3078–3093.
-
(2004)
Genes Dev.
, vol.18
, pp. 3078-3093
-
-
Unbehaun, A.1
Borukhov, S.I.2
Hellen, C.U.3
Pestova, T.V.4
-
58
-
-
84905655144
-
Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA
-
Yamamoto, H., Unbehaun, A., Loerke, J., Behrmann, E., Collier, M., Bürger, J., Mielke, T., Spahn, C.M., Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA. Nat. Struct. Mol. Biol. 21 (2014), 721–727.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 721-727
-
-
Yamamoto, H.1
Unbehaun, A.2
Loerke, J.3
Behrmann, E.4
Collier, M.5
Bürger, J.6
Mielke, T.7
Spahn, C.M.8
-
59
-
-
80455173909
-
The mechanism of translation initiation on Aichivirus RNA mediated by a novel type of picornavirus IRES
-
Yu, Y., Sweeney, T.R., Kafasla, P., Jackson, R.J., Pestova, T.V., Hellen, C.U., The mechanism of translation initiation on Aichivirus RNA mediated by a novel type of picornavirus IRES. EMBO J. 30 (2011), 4423–4436.
-
(2011)
EMBO J.
, vol.30
, pp. 4423-4436
-
-
Yu, Y.1
Sweeney, T.R.2
Kafasla, P.3
Jackson, R.J.4
Pestova, T.V.5
Hellen, C.U.6
-
60
-
-
84941027177
-
Conformational changes in the P site and mRNA entry channel evoked by AUG recognition in yeast translation preinitiation complexes
-
Zhang, F., Saini, A.K., Shin, B.S., Nanda, J., Hinnebusch, A.G., Conformational changes in the P site and mRNA entry channel evoked by AUG recognition in yeast translation preinitiation complexes. Nucleic Acids Res. 43 (2015), 2293–2312.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 2293-2312
-
-
Zhang, F.1
Saini, A.K.2
Shin, B.S.3
Nanda, J.4
Hinnebusch, A.G.5
-
61
-
-
57449083256
-
Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3
-
Zhou, M., Sandercock, A.M., Fraser, C.S., Ridlova, G., Stephens, E., Schenauer, M.R., Yokoi-Fong, T., Barsky, D., Leary, J.A., Hershey, J.W., et al. Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3. Proc. Natl. Acad. Sci. U S A 105 (2008), 18139–18144.
-
(2008)
Proc. Natl. Acad. Sci. U S A
, vol.105
, pp. 18139-18144
-
-
Zhou, M.1
Sandercock, A.M.2
Fraser, C.S.3
Ridlova, G.4
Stephens, E.5
Schenauer, M.R.6
Yokoi-Fong, T.7
Barsky, D.8
Leary, J.A.9
Hershey, J.W.10
|