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Volumn 513, Issue 7519, 2014, Pages 517-522

Structural basis for the inhibition of the eukaryotic ribosome

Author keywords

[No Author keywords available]

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; ANISOMYCIN; ANTIBIOTIC AGENT; ANTIBIOTIC G 418; BLASTICIDIN S; CRYPTOPLEURINE; CYCLOHEXIMIDE; EDEINE; FUNGAL PROTEIN; FUNGAL RNA; GLUTARIMIDE; HOMOHARRINGTONINE; LACTIMIDOMYCIN; LYCORINE; MESSENGER RNA; NAGILACTONE C; NARCICLASINE; PACTAMYCIN; PEPTIDYLTRANSFERASE; PHYLLANTHOSIDE; RIBOSOME PROTEIN; T 2 TOXIN; TRANSFER RNA; UNCLASSIFIED DRUG; VERRUCARIN A; VOMITOXIN; MACROLIDE; PIPERIDONE DERIVATIVE; PROTEIN SYNTHESIS INHIBITOR;

EID: 84908546298     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13737     Document Type: Article
Times cited : (402)

References (43)
  • 1
    • 83855162728 scopus 로고    scopus 로고
    • The structure of the eukaryotic ribosome at 3.0Å resolution
    • Ben-Shem, A. et al. The structure of the eukaryotic ribosome at 3.0Å resolution. Science 334, 1524-1529 (2011).
    • (2011) Science , vol.334 , pp. 1524-1529
    • Ben-Shem, A.1
  • 2
    • 84861908221 scopus 로고    scopus 로고
    • One core, two shells: Bacterial and eukaryotic ribosomes
    • Melnikov, S. et al. One core, two shells: bacterial and eukaryotic ribosomes. Nature Struct. Mol. Biol. 19, 560-567 (2012).
    • (2012) Nature Struct. Mol. Biol. , vol.19 , pp. 560-567
    • Melnikov, S.1
  • 3
    • 84870390071 scopus 로고    scopus 로고
    • Crystal structure of the 80S yeast ribosome
    • Jenner, L. et al. Crystal structure of the 80S yeast ribosome. Curr. Opin. Struct. Biol. 22, 759-767 (2012).
    • (2012) Curr. Opin. Struct. Biol. , vol.22 , pp. 759-767
    • Jenner, L.1
  • 4
    • 60149091189 scopus 로고    scopus 로고
    • Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
    • Sonenberg, N. & Hinnebusch, A. G. Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136, 731-745 (2009).
    • (2009) Cell , vol.136 , pp. 731-745
    • Sonenberg, N.1    Hinnebusch, A.G.2
  • 5
    • 84890445788 scopus 로고    scopus 로고
    • Ribosome-targeting antibiotics and mechanisms of bacterial resistance
    • Wilson, D. N. Ribosome-targeting antibiotics and mechanisms of bacterial resistance. Nature Rev. Microbiol. 12, 35-48 (2014).
    • (2014) Nature Rev. Microbiol. , vol.12 , pp. 35-48
    • Wilson, D.N.1
  • 7
    • 55549114299 scopus 로고    scopus 로고
    • Design at the atomic level: Generation of novel hybrid biaryloxazolidinones as promising new antibiotics
    • Zhou, J. et al. Design at the atomic level: generation of novel hybrid biaryloxazolidinones as promising new antibiotics. Bioorg. Med. Chem. Lett. 18, 6179-6183 (2008).
    • (2008) Bioorg. Med. Chem. Lett. , vol.18 , pp. 6179-6183
    • Zhou, J.1
  • 8
    • 79958007665 scopus 로고    scopus 로고
    • Genetic reconstruction of protozoan rRNA decoding sites provides a rationale for paromomycin activity against Leishmania and Trypanosoma
    • Hobbie, S. N. et al. Genetic reconstruction of protozoan rRNA decoding sites provides a rationale for paromomycin activity against Leishmania and Trypanosoma. PLoS Negl. Trop. Dis. 5, e1161 (2011).
    • (2011) PLoS Negl. Trop. Dis. , vol.5 , pp. e1161
    • Hobbie, S.N.1
  • 9
    • 79955380502 scopus 로고    scopus 로고
    • Biosynthetic studies and genetic engineering of pactamycin analogs with improved selectivity toward malarial parasites
    • Lu, W., Roongsawang, N. & Mahmud, T. Biosynthetic studies and genetic engineering of pactamycin analogs with improved selectivity toward malarial parasites. Chem. Biol. 18, 425-431 (2011).
    • (2011) Chem. Biol. , vol.18 , pp. 425-431
    • Lu, W.1    Roongsawang, N.2    Mahmud, T.3
  • 10
    • 84880438841 scopus 로고    scopus 로고
    • Tight coordination of protein translation and HSF1 activation supports the anabolic malignant state
    • Santagata, S. et al. Tight coordination of protein translation and HSF1 activation supports the anabolic malignant state. Science 341, 1238303 (2013).
    • (2013) Science , vol.341 , pp. 1238303
    • Santagata, S.1
  • 11
    • 84868199631 scopus 로고    scopus 로고
    • Sense from nonsense: Therapies for premature stop codon diseases
    • Bidou, L., Allamand, V., Rousset, J. P. & Namy, O. Sense from nonsense: therapies for premature stop codon diseases. Trends Mol. Med. 18, 679-688 (2012).
    • (2012) Trends Mol. Med. , vol.18 , pp. 679-688
    • Bidou, L.1    Allamand, V.2    Rousset, J.P.3    Namy, O.4
  • 12
    • 84886953546 scopus 로고    scopus 로고
    • The translation of translational control by FMRP: Therapeutic targets for FXS
    • Darnell, J. C. & Klann, E. The translation of translational control by FMRP: therapeutic targets for FXS. Nature Neurosci. 16, 1530-1536 (2013).
    • (2013) Nature Neurosci. , vol.16 , pp. 1530-1536
    • Darnell, J.C.1    Klann, E.2
  • 13
    • 71249162369 scopus 로고    scopus 로고
    • Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui
    • Gürel, G., Blaha, G., Steitz, T. A. & Moore, P. B. Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui. Antimicrob. Agents Chemother. 53, 5010-5014 (2009).
    • (2009) Antimicrob. Agents Chemother. , vol.53 , pp. 5010-5014
    • Gürel, G.1    Blaha, G.2    Steitz, T.A.3    Moore, P.B.4
  • 14
    • 67349260439 scopus 로고    scopus 로고
    • U2504 determines the species specificity of the A-site cleft antibiotics: The structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome
    • Gürel, G., Blaha, G., Moore, P. B. & Steitz, T. A. U2504 determines the species specificity of the A-site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome. J. Mol. Biol. 389, 146-156 (2009).
    • (2009) J. Mol. Biol. , vol.389 , pp. 146-156
    • Gürel, G.1    Blaha, G.2    Moore, P.B.3    Steitz, T.A.4
  • 15
    • 81555219350 scopus 로고    scopus 로고
    • Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6
    • Klinge, S., Voigts-Hoffmann, F., Leibundgut, M., Arpagaus, S. & Ban, N. Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science 334, 941-948 (2011).
    • (2011) Science , vol.334 , pp. 941-948
    • Klinge, S.1    Voigts-Hoffmann, F.2    Leibundgut, M.3    Arpagaus, S.4    Ban, N.5
  • 16
    • 0036629250 scopus 로고    scopus 로고
    • rRNA modifications and ribosome function
    • Decatur, W. A. & Fournier, M. J. rRNA modifications and ribosome function. Trends Biochem. Sci. 27, 344-351 (2002).
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 344-351
    • Decatur, W.A.1    Fournier, M.J.2
  • 17
    • 1242341504 scopus 로고    scopus 로고
    • Eukaryotic protein synthesis inhibitors identified by comparison of cytotoxicity profiles
    • Chan, J., Khan, S. N., Harvey, I., Merrick, W. & Pelletier, J. Eukaryotic protein synthesis inhibitors identified by comparison of cytotoxicity profiles. RNA 10, 528-543 (2004).
    • (2004) RNA , vol.10 , pp. 528-543
    • Chan, J.1    Khan, S.N.2    Harvey, I.3    Merrick, W.4    Pelletier, J.5
  • 18
    • 77249087063 scopus 로고    scopus 로고
    • Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin
    • Schneider-Poetsch, T. et al. Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nature Chem. Biol. 6, 209-217 (2010).
    • (2010) Nature Chem. Biol. , vol.6 , pp. 209-217
    • Schneider-Poetsch, T.1
  • 19
    • 84866267681 scopus 로고    scopus 로고
    • Global mapping of translation initiation sites inmammalian cells at single-nucleotide resolution
    • Lee, S., Liu, B., Huang, S. X., Shen, B. & Qian, S. B. Global mapping of translation initiation sites inmammalian cells at single-nucleotide resolution. Proc. Natl Acad. Sci. USA 109, E2424-E2432 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. E2424-E2432
    • Lee, S.1    Liu, B.2    Huang, S.X.3    Shen, B.4    Qian, S.B.5
  • 20
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223 (2009).
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 21
    • 0018510092 scopus 로고
    • Fluorescent derivatives of yeast tRNAPhe
    • Wintermeyer, W. & Zachau, H. G. Fluorescent derivatives of yeast tRNAPhe. Eur. J. Biochem. 98, 465-475 (1979).
    • (1979) Eur. J. Biochem. , vol.98 , pp. 465-475
    • Wintermeyer, W.1    Zachau, H.G.2
  • 22
    • 0022494313 scopus 로고
    • Affinities of tRNA binding sites of ribosomes from Escherichia coli
    • Lill, R., Robertson, J. M. & Wintermeyer, W. Affinities of tRNA binding sites of ribosomes from Escherichia coli. Biochemistry 25, 3245-3255 (1986).
    • (1986) Biochemistry , vol.25 , pp. 3245-3255
    • Lill, R.1    Robertson, J.M.2    Wintermeyer, W.3
  • 23
    • 84880685990 scopus 로고    scopus 로고
    • Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome
    • Svidritskiy, E., Ling, C., Ermolenko, D. N. & Korostelev, A. A. Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome. Proc. Natl Acad. Sci. USA 110, 12283-12288 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 12283-12288
    • Svidritskiy, E.1    Ling, C.2    Ermolenko, D.N.3    Korostelev, A.A.4
  • 24
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • Cannone, J. J. et al. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3, 2 (2002).
    • (2002) BMC Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1
  • 25
    • 84859593945 scopus 로고    scopus 로고
    • A new understanding of the decoding principle on the ribosome
    • Demeshkina, N., Jenner, L., Westhof, E., Yusupov, M. & Yusupova, G. A new understanding of the decoding principle on the ribosome. Nature 484, 256-259 (2012).
    • (2012) Nature , vol.484 , pp. 256-259
    • Demeshkina, N.1    Jenner, L.2    Westhof, E.3    Yusupov, M.4    Yusupova, G.5
  • 26
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle, J. M., Murphy, F. V., Tarry, M. J. & Ramakrishnan, V. Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell 111, 721-732 (2002).
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 27
    • 84893141493 scopus 로고    scopus 로고
    • Designer aminoglycosides that selectively inhibit cytoplasmic rather than mitochondrial ribosomes show decreased ototoxicity: A strategy for the treatment of genetic diseases
    • Shulman, E. et al. Designer aminoglycosides that selectively inhibit cytoplasmic rather than mitochondrial ribosomes show decreased ototoxicity: a strategy for the treatment of genetic diseases. J. Biol. Chem. 289, 2318-2330 (2014).
    • (2014) J. Biol. Chem. , vol.289 , pp. 2318-2330
    • Shulman, E.1
  • 28
    • 38049092550 scopus 로고    scopus 로고
    • Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity
    • Fan-Minogue, H. & Bedwell, D. M. Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity. RNA 14, 148-157 (2008).
    • (2008) RNA , vol.14 , pp. 148-157
    • Fan-Minogue, H.1    Bedwell, D.M.2
  • 29
    • 0033152492 scopus 로고    scopus 로고
    • Basis for prokaryotic specificity of action of aminoglycoside antibiotics
    • Recht, M. I., Douthwaite, S. & Puglisi, J. D. Basis for prokaryotic specificity of action of aminoglycoside antibiotics. EMBO J. 18, 3133-3138 (1999).
    • (1999) EMBO J. , vol.18 , pp. 3133-3138
    • Recht, M.I.1    Douthwaite, S.2    Puglisi, J.D.3
  • 30
    • 84872533264 scopus 로고    scopus 로고
    • Aminoglycoside antibiotics in the 21st century
    • Becker, B. & Cooper, M. A. Aminoglycoside antibiotics in the 21st century. ACS Chem. Biol. 8, 105-115 (2013).
    • (2013) ACS Chem. Biol. , vol.8 , pp. 105-115
    • Becker, B.1    Cooper, M.A.2
  • 31
    • 84893267937 scopus 로고    scopus 로고
    • 49-O-substitutions determine selectivity of aminoglycoside antibiotics
    • Perez-Fernandez, D. et al. 49-O-substitutions determine selectivity of aminoglycoside antibiotics. Nature Commun. 5, 3112 (2014).
    • (2014) Nature Commun. , vol.5 , pp. 3112
    • Perez-Fernandez, D.1
  • 32
    • 1642564526 scopus 로고    scopus 로고
    • Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: The universally conserved residues G693 and C795 regulate P-site RNA binding
    • Dinos, G. et al. Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: the universally conserved residues G693 and C795 regulate P-site RNA binding. Mol. Cell 13, 113-124 (2004).
    • (2004) Mol. Cell , vol.13 , pp. 113-124
    • Dinos, G.1
  • 33
    • 17744377418 scopus 로고    scopus 로고
    • Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3
    • Pioletti, M. et al. Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3. EMBO J. 20, 1829-1839 (2001).
    • (2001) EMBO J. , vol.20 , pp. 1829-1839
    • Pioletti, M.1
  • 34
    • 0018198353 scopus 로고
    • Migration of 40 S ribosomal subunits on messenger RNA in the presence of edeine
    • Kozak, M. & Shatkin, A. J. Migration of 40 S ribosomal subunits on messenger RNA in the presence of edeine. J. Biol. Chem. 253, 6568-6577 (1978).
    • (1978) J. Biol. Chem. , vol.253 , pp. 6568-6577
    • Kozak, M.1    Shatkin, A.J.2
  • 35
    • 0019950578 scopus 로고
    • Quantitation of the specific interaction of [14a-3H]cryptopleurine with 80S and 40S ribosomal species from the yeast Saccharomyces cerevisiae
    • Dölz, H., Vazquez, D. & Jimenez, A. Quantitation of the specific interaction of [14a-3H]cryptopleurine with 80S and 40S ribosomal species from the yeast Saccharomyces cerevisiae. Biochemistry 21, 3181-3187 (1982).
    • (1982) Biochemistry , vol.21 , pp. 3181-3187
    • Dölz, H.1    Vazquez, D.2    Jimenez, A.3
  • 36
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia, N. T., Lareau, L. F. & Weissman, J. S. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147, 789-802 (2011).
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 37
    • 84893267857 scopus 로고    scopus 로고
    • Omacetaxine mepesuccinate in the treatment of intractable chronic myeloid leukemia
    • Chen, Y. & Li, S. Omacetaxine mepesuccinate in the treatment of intractable chronic myeloid leukemia. Onco Targets Ther 7, 177-186 (2014).
    • (2014) Onco Targets Ther , vol.7 , pp. 177-186
    • Chen, Y.1    Li, S.2
  • 38
    • 67651157036 scopus 로고    scopus 로고
    • Biological evaluation of structurally diverse amaryllidaceae alkaloids and their synthetic derivatives: Discovery of novel leads for anticancer drug design
    • Evidente, A. et al. Biological evaluation of structurally diverse amaryllidaceae alkaloids and their synthetic derivatives: discovery of novel leads for anticancer drug design. Planta Med. 75, 501-507 (2009).
    • (2009) Planta Med. , vol.75 , pp. 501-507
    • Evidente, A.1
  • 40
    • 77954594796 scopus 로고    scopus 로고
    • Methylation of ribosomal protein L42 regulates ribosomal function and stress-adapted cell growth
    • Shirai, A., Sadaie, M., Shinmyozu, K. & Nakayama, J. Methylation of ribosomal protein L42 regulates ribosomal function and stress-adapted cell growth. J. Biol. Chem. 285, 22448-22460 (2010).
    • (2010) J. Biol. Chem. , vol.285 , pp. 22448-22460
    • Shirai, A.1    Sadaie, M.2    Shinmyozu, K.3    Nakayama, J.4
  • 41
    • 0026554895 scopus 로고
    • Drastic alteration of cycloheximide sensitivity by substitution of one amino acid in the L41 ribosomal protein of yeasts
    • Kawai, S. et al. Drastic alteration of cycloheximide sensitivity by substitution of one amino acid in the L41 ribosomal protein of yeasts. J. Bacteriol. 174, 254-262 (1992).
    • (1992) J. Bacteriol. , vol.174 , pp. 254-262
    • Kawai, S.1
  • 43
    • 0017759152 scopus 로고
    • Genetics and biochemistry of cryptopleurine resistance in the yeast Saccharomyces cerevisiae
    • Sánchez, L., Vásquez, D. & Jiménez, A. Genetics and biochemistry of cryptopleurine resistance in the yeast Saccharomyces cerevisiae. Mol. Gen. Genet. 156, 319-326 (1977).
    • (1977) Mol. Gen. Genet. , vol.156 , pp. 319-326
    • Sánchez, L.1    Vásquez, D.2    Jiménez, A.3


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