JUMPg: An integrative proteogenomics pipeline identifying unannotated proteins in human brain and cancer cells

Journal of Proteome Research

Volumn 15, Issue 7, 2016, Pages 2309-2320

  Li, Yuxin ^a   Wang, Xusheng ^a   Cho, Ji Hoon ^a   Shaw, Timothy I ^a   Wu, Zhiping ^a   Bai, Bing ^a   Wang, Hong ^a,b   Zhou, Suiping ^a   Beach, Thomas G ^c   Wu, Gang ^a   Zhang, Jinghui ^a   Peng, Junmin ^a  

^a ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^b UNIVERSITY OF TENNESSEE HEALTH SCIENCE CENTER   (United States)

^c SUN HEALTH RESEARCH INSTITUTE   (United States)

Author keywords

database search; genomics; mass spectrometry; multistage analysis; proteogenomics; proteomics; RNA seq; spectrum quality control

Indexed keywords

IMMUNOGLOBULIN LIGHT CHAIN; PNMA6BL PROTEIN; PROTEIN; UNCLASSIFIED DRUG; PEPTIDE; TUMOR PROTEIN;

ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BINDING SITE; BRAIN CELL; CANCER CELL; DATA BASE; DNA POLYMORPHISM; FUNCTIONAL GENOMICS; GENE LOCUS; HUMAN; HUMAN CELL; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN EXPRESSION; PROTEOMICS; QUALITY CONTROL; RNA SEQUENCE; RNA SPLICING; SINGLE NUCLEOTIDE POLYMORPHISM; ALZHEIMER DISEASE; BRAIN CHEMISTRY; CHEMISTRY; DATA MINING; MULTIPLE MYELOMA; NEOPLASM; PATHOLOGY; PROCEDURES; PROTEOGENOMICS; SEARCH ENGINE; SOFTWARE; WORKFLOW;

ALZHEIMER DISEASE; BRAIN CHEMISTRY; DATA MINING; HUMANS; MULTIPLE MYELOMA; NEOPLASM PROTEINS; NEOPLASMS; PEPTIDES; PROTEINS; PROTEOGENOMICS; SEARCH ENGINE; SOFTWARE; WORKFLOW;

EID: 84977160688     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.6b00344     Document Type: Article

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