-
1
-
-
84941804038
-
Structure-encoded global motions and their role in mediating protein-substrate interactions
-
Bahar, I., Cheng, M.H., Lee, J.Y., Kaya, C. and Zhang, S. (2015) Structure-encoded global motions and their role in mediating protein-substrate interactions. Biophys. J., 109, 1101-1109.
-
(2015)
Biophys. J.
, vol.109
, pp. 1101-1109
-
-
Bahar, I.1
Cheng, M.H.2
Lee, J.Y.3
Kaya, C.4
Zhang, S.5
-
2
-
-
77952938726
-
Global dynamics of proteins: Bridging between structure and function
-
Bahar, I., Lezon, T.R., Yang, L.W. and Eyal, E. (2010) Global dynamics of proteins: bridging between structure and function. Annu. Rev. Biophys., 39, 23-42.
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 23-42
-
-
Bahar, I.1
Lezon, T.R.2
Yang, L.W.3
Eyal, E.4
-
3
-
-
48749126860
-
Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking
-
Dobbins, S.E., Lesk, V.I. and Sternberg, M.J. (2008) Insights into protein flexibility: the relationship between normal modes and conformational change upon protein-protein docking. Proc. Natl. Acad. Sci. U.S.A., 105, 10390-10395.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 10390-10395
-
-
Dobbins, S.E.1
Lesk, V.I.2
Sternberg, M.J.3
-
4
-
-
30044434744
-
Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state
-
Tobi, D. and Bahar, I. (2005) Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state. Proc. Natl. Acad. Sci. U.S.A, 102, 18908-18913.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 18908-18913
-
-
Tobi, D.1
Bahar, I.2
-
5
-
-
70149090164
-
The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding
-
Bakan, A. and Bahar, I. (2009) The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding. Proc. Natl. Acad. Sci. U.S.A, 106, 14349-14354.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 14349-14354
-
-
Bakan, A.1
Bahar, I.2
-
6
-
-
84938900365
-
Adaptability of protein structures to enable functional interactions and evolutionary implications
-
Haliloglu, T. and Bahar, I. (2015) Adaptability of protein structures to enable functional interactions and evolutionary implications. Curr. Opin. Struct. Biol., 35, 17-23.
-
(2015)
Curr. Opin. Struct. Biol.
, vol.35
, pp. 17-23
-
-
Haliloglu, T.1
Bahar, I.2
-
7
-
-
0030623823
-
Direct evaluation of thermal fuctuations in proteins using a single-parameter harmonic potential
-
Bahar, I., Atilgan, A.R. and Erman, B. (1997) Direct evaluation of thermal fuctuations in proteins using a single-parameter harmonic potential. Fold. Des., 2, 173-181.
-
(1997)
Fold. Des.
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
8
-
-
0345973041
-
Gaussian dynamics of folded proteins
-
Haliloglu, T., Bahar, I. and Erman, B. (1997) Gaussian dynamics of folded proteins. Phys. Rev. Lett., 79, 3090-3093.
-
(1997)
Phys. Rev. Lett.
, vol.79
, pp. 3090-3093
-
-
Haliloglu, T.1
Bahar, I.2
Erman, B.3
-
9
-
-
20444429274
-
Ignm: A database of protein functional motions based on Gaussian network model
-
Yang, L.W., Liu, X., Jursa, C.J., Holliman, M., Rader, A.J., Karimi, H.A. and Bahar, I. (2005) iGNM: a database of protein functional motions based on Gaussian network model. Bioinformatics, 21, 2978-2987.
-
(2005)
Bioinformatics
, vol.21
, pp. 2978-2987
-
-
Yang, L.W.1
Liu, X.2
Jursa, C.J.3
Holliman, M.4
Rader, A.J.5
Karimi, H.A.6
Bahar, I.7
-
10
-
-
33747829284
-
Ognm: Online computation of structural dynamics using the Gaussian network model
-
Yang, L.W., Rader, A.J., Liu, X., Jursa, C.J., Chen, S.C., Karimi, H.A. and Bahar, I. (2006) oGNM: online computation of structural dynamics using the Gaussian network model. Nucleic Acids Res., 34, W24-W31.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W24-W31
-
-
Yang, L.W.1
Rader, A.J.2
Liu, X.3
Jursa, C.J.4
Chen, S.C.5
Karimi, H.A.6
Bahar, I.7
-
11
-
-
37549063068
-
Role of intermolecular forces in defining material properties of protein nanofibrils
-
Knowles, T.P., Fitzpatrick, A.W., Meehan, S., Mott, H.R., Vendruscolo, M., Dobson, C.M. and Welland, M.E. (2007) Role of intermolecular forces in defining material properties of protein nanofibrils. Science, 318, 1900-1903.
-
(2007)
Science
, vol.318
, pp. 1900-1903
-
-
Knowles, T.P.1
Fitzpatrick, A.W.2
Meehan, S.3
Mott, H.R.4
Vendruscolo, M.5
Dobson, C.M.6
Welland, M.E.7
-
12
-
-
44149087864
-
Proteins: Coexistence of stability and flexibility
-
Reuveni, S., Granek, R. and Klafter, J. (2008) Proteins: coexistence of stability and flexibility. Phys. Rev. Lett., 100, 208101-208104.
-
(2008)
Phys. Rev. Lett.
, vol.100
, pp. 208101-208104
-
-
Reuveni, S.1
Granek, R.2
Klafter, J.3
-
13
-
-
84862290983
-
Combining statistical potentials with dynamics-based entropies improves selection from protein decoys and docking poses
-
Zimmermann, M.T., Leelananda, S.P., Kloczkowski, A. and Jernigan, R.L. (2012) Combining statistical potentials with dynamics-based entropies improves selection from protein decoys and docking poses. J. Phys. Chem. B, 116, 6725-6731.
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 6725-6731
-
-
Zimmermann, M.T.1
Leelananda, S.P.2
Kloczkowski, A.3
Jernigan, R.L.4
-
14
-
-
20444409186
-
Coupling between catalytic site and collective dynamics: A requirement for mechanochemical activity of enzymes
-
Yang, L.W. and Bahar, I. (2005) Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. Structure, 13, 893-904.
-
(2005)
Structure
, vol.13
, pp. 893-904
-
-
Yang, L.W.1
Bahar, I.2
-
15
-
-
84906572523
-
Molecular binding sites are located near the interface of intrinsic dynamics domains (IDDs)
-
Li, H., Sakuraba, S., Chandrasekaran, A. and Yang, L.W. (2014) Molecular binding sites are located near the interface of intrinsic dynamics domains (IDDs). J. Chem. Inf. Model., 54, 2275-2285.
-
(2014)
J. Chem. Inf. Model.
, vol.54
, pp. 2275-2285
-
-
Li, H.1
Sakuraba, S.2
Chandrasekaran, A.3
Yang, L.W.4
-
16
-
-
0017024625
-
Statistical thermodynamics of random networks
-
Flory, P.J. (1976) Statistical thermodynamics of random networks. Proc. R. Soc. Lond. A., 351, 351-380.
-
(1976)
Proc. R. Soc. Lond. A.
, vol.351
, pp. 351-380
-
-
Flory, P.J.1
-
17
-
-
84923139220
-
Comparing the intrinsic dynamics of multiple protein structures using elastic network models
-
Fuglebakk, E., Tiwari, S.P. and Reuter, N. (2015) Comparing the intrinsic dynamics of multiple protein structures using elastic network models. Biochim. Biophys. Acta, 1850, 911-922.
-
(2015)
Biochim. Biophys. Acta
, vol.1850
, pp. 911-922
-
-
Fuglebakk, E.1
Tiwari, S.P.2
Reuter, N.3
-
18
-
-
84863662039
-
Elastic network models are robust to variations in Formalism
-
Leioatts, N., Romo, T.D. and Grossfield, A. (2012) Elastic network models are robust to variations in formalism. J. Chem. Theory. Comput., 8, 2424-2434.
-
(2012)
J. Chem. Theory. Comput.
, vol.8
, pp. 2424-2434
-
-
Leioatts, N.1
Romo, T.D.2
Grossfield, A.3
-
19
-
-
0042503333
-
A simplified force field for describing vibrational protein dynamics over the whole frequency range
-
Hinsen, K. and Kneller, G.R. (1999) A simplified force field for describing vibrational protein dynamics over the whole frequency range. J. Chem. Phys., 111, 10766-10769.
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 10766-10769
-
-
Hinsen, K.1
Kneller, G.R.2
-
20
-
-
0033117937
-
Investigating protein dynamics in collective coordinate space
-
Kitao, A. and Go, N. (1999) Investigating protein dynamics in collective coordinate space. Curr. Opin. Struct. Biol., 9, 164-169.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 164-169
-
-
Kitao, A.1
Go, N.2
-
21
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
Tama, F. and Sanejouand, Y.H. (2001) Conformational change of proteins arising from normal mode calculations. Protein Eng., 14, 1-6.
-
(2001)
Protein Eng.
, vol.14
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.H.2
-
22
-
-
0000496772
-
Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability
-
Bahar, I., Atilgan, A.R., Demirel, M.C. and Erman, B. (1998) Vibrational dynamics of folded proteins: significance of slow and fast motions in relation to function and stability. Phys. Rev. Lett., 80, 2733-2736.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 2733-2736
-
-
Bahar, I.1
Atilgan, A.R.2
Demirel, M.C.3
Erman, B.4
-
23
-
-
2442548750
-
Identification of core amino acids stabilizing rhodopsin
-
Rader, A.J., Anderson, G., Isin, B., Khorana, H.G., Bahar, I. and Klein-Seetharaman, J. (2004) Identification of core amino acids stabilizing rhodopsin. Proc. Natl. Acad. Sci. U.S.A., 101, 7246-7251.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 7246-7251
-
-
Rader, A.J.1
Anderson, G.2
Isin, B.3
Khorana, H.G.4
Bahar, I.5
Klein-Seetharaman, J.6
-
24
-
-
77953050209
-
On the functional significance of soft modes predicted by coarse-grained models for membrane proteins
-
Bahar, I. (2010) On the functional significance of soft modes predicted by coarse-grained models for membrane proteins. J. Gen. Physiol., 135, 563-573.
-
(2010)
J. Gen. Physiol.
, vol.135
, pp. 563-573
-
-
Bahar, I.1
-
25
-
-
0035996990
-
Dynamics of proteins in crystals: Comparison of experiment with simple models
-
Kundu, S., Melton, J.S., Sorensen, D.C. and Phillips, G.N. Jr (2002) Dynamics of proteins in crystals: comparison of experiment with simple models. Biophys. J., 83, 723-732.
-
(2002)
Biophys. J.
, vol.83
, pp. 723-732
-
-
Kundu, S.1
Melton, J.S.2
Sorensen, D.C.3
Phillips, G.N.4
-
26
-
-
0032570266
-
Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model
-
Bahar, I., Wallqvist, A., Covell, D.G. and Jernigan, R.L. (1998) Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model. Biochemistry, 37, 1067-1075.
-
(1998)
Biochemistry
, vol.37
, pp. 1067-1075
-
-
Bahar, I.1
Wallqvist, A.2
Covell, D.G.3
Jernigan, R.L.4
-
27
-
-
34249945151
-
Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions
-
Yang, L.W., Eyal, E., Chennubhotla, C., Jee, J., Gronenborn, A.M. and Bahar, I. (2007) Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions. Structure, 15, 741-749.
-
(2007)
Structure
, vol.15
, pp. 741-749
-
-
Yang, L.W.1
Eyal, E.2
Chennubhotla, C.3
Jee, J.4
Gronenborn, A.M.5
Bahar, I.6
-
28
-
-
61449106774
-
Principal component analysis of native ensembles of biomolecular structures (PCA NEST): Insights into functional dynamics
-
Yang, L.W., Eyal, E., Bahar, I. and Kitao, A. (2009) Principal component analysis of native ensembles of biomolecular structures (PCA NEST): insights into functional dynamics. Bioinformatics, 25, 606-614.
-
(2009)
Bioinformatics
, vol.25
, pp. 606-614
-
-
Yang, L.W.1
Eyal, E.2
Bahar, I.3
Kitao, A.4
-
29
-
-
38949218425
-
Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes
-
Yang, L., Song, G., Carriquiry, A. and Jernigan, R.L. (2008) Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes. Structure, 16, 321-330.
-
(2008)
Structure
, vol.16
, pp. 321-330
-
-
Yang, L.1
Song, G.2
Carriquiry, A.3
Jernigan, R.L.4
-
30
-
-
84901471787
-
Elastic network models capture the motions apparent within ensembles of RNA structures
-
Zimmermann, M.T. and Jernigan, R.L. (2014) Elastic network models capture the motions apparent within ensembles of RNA structures. RNA, 20, 792-804.
-
(2014)
RNA
, vol.20
, pp. 792-804
-
-
Zimmermann, M.T.1
Jernigan, R.L.2
-
31
-
-
84941122318
-
Elastic network models for RNA: A comparative assessment with molecular dynamics and SHAPE experiments
-
Pinamonti, G., Bottaro, S., Micheletti, C. and Bussi, G. (2015) Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments. Nucleic Acids Res., 43, 7260-7269.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 7260-7269
-
-
Pinamonti, G.1
Bottaro, S.2
Micheletti, C.3
Bussi, G.4
-
32
-
-
39749202824
-
HingeProt: Automated prediction of hinges in protein structures
-
Emekli, U., Schneidman-Duhovny, D., Wolfson, H.J., Nussinov, R. and Haliloglu, T. (2008) HingeProt: automated prediction of hinges in protein structures. Proteins, 70, 1219-1227.
-
(2008)
Proteins
, vol.70
, pp. 1219-1227
-
-
Emekli, U.1
Schneidman-Duhovny, D.2
Wolfson, H.J.3
Nussinov, R.4
Haliloglu, T.5
-
33
-
-
59949101814
-
StoneHinge: Hinge prediction by network analysis of individual protein structures
-
Keating, K.S., Flores, S.C., Gerstein, M.B. and Kuhn, L.A. (2009) StoneHinge: hinge prediction by network analysis of individual protein structures. Protein Sci., 18, 359-371.
-
(2009)
Protein Sci.
, vol.18
, pp. 359-371
-
-
Keating, K.S.1
Flores, S.C.2
Gerstein, M.B.3
Kuhn, L.A.4
-
34
-
-
0037246863
-
MolMovDB: Analysis and visualization of conformational change and structural flexibility
-
Echols, N., Milburn, D. and Gerstein, M. (2003) MolMovDB: analysis and visualization of conformational change and structural flexibility. Nucleic Acids Res., 31, 478-482.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 478-482
-
-
Echols, N.1
Milburn, D.2
Gerstein, M.3
-
35
-
-
0036721233
-
Normal mode analysis of macromolecular motions in a database framework: Developing mode concentration as a useful classifying statistic
-
Krebs, W.G., Alexandrov, V., Wilson, C.A., Echols, N., Yu, H. and Gerstein, M. (2002) Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic. Proteins, 48, 682-695.
-
(2002)
Proteins
, vol.48
, pp. 682-695
-
-
Krebs, W.G.1
Alexandrov, V.2
Wilson, C.A.3
Echols, N.4
Yu, H.5
Gerstein, M.6
-
36
-
-
3242875210
-
ElNemo: A normal mode web server for protein movement analysis and the generation of templates for molecular replacement
-
Suhre, K. and Sanejouand, Y.H. (2004) ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Res., 32, W610-W614.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W610-W614
-
-
Suhre, K.1
Sanejouand, Y.H.2
-
37
-
-
4544280144
-
ProMode: A database of normal mode analyses on protein molecules with a full-atom model
-
Wako, H., Kato, M. and Endo, S. (2004) ProMode: a database of normal mode analyses on protein molecules with a full-atom model. Bioinformatics, 20, 2035-2043.
-
(2004)
Bioinformatics
, vol.20
, pp. 2035-2043
-
-
Wako, H.1
Kato, M.2
Endo, S.3
-
38
-
-
25444528449
-
WEBnm@: A web application for normal mode analyses of proteins
-
Hollup, S.M., Salensminde, G. and Reuter, N. (2005) WEBnm@: a web application for normal mode analyses of proteins. BMC Bioinformatics, 6, 52.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 52
-
-
Hollup, S.M.1
Salensminde, G.2
Reuter, N.3
-
39
-
-
33747858757
-
NOMAD-ref: Visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis
-
Lindahl, E., Azuara, C., Koehl, P. and Delarue, M. (2006) NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. Nucleic Acids Res., 34, W52-W56.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W52-W56
-
-
Lindahl, E.1
Azuara, C.2
Koehl, P.3
Delarue, M.4
-
40
-
-
80053988669
-
Imod: Multipurpose normal mode analysis in internal coordinates
-
Lopéz-Blanco, J.R., Garzón, J.I. and Chacón, P. (2011) iMod: multipurpose normal mode analysis in internal coordinates. Bioinformatics, 27, 2843-2850.
-
(2011)
Bioinformatics
, vol.27
, pp. 2843-2850
-
-
Lopéz-Blanco, J.R.1
Garzón, J.I.2
Chacón, P.3
-
41
-
-
84864422679
-
KOSMOS: A universal morph server for nucleic acids, proteins and their complexes
-
Seo, S. and Kim, M.K. (2012) KOSMOS: a universal morph server for nucleic acids, proteins and their complexes. Nucleic Acids Res., 40, W531-W536.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W531-W536
-
-
Seo, S.1
Kim, M.K.2
-
42
-
-
84875720013
-
Normal mode analysis based on an elastic network model for biomolecules in the protein data bank, which uses dihedral angles as independent variables
-
Wako, H. and Endo, S. (2013) Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables. Comput. Biol. Chem., 44, 22-30.
-
(2013)
Comput. Biol. Chem.
, vol.44
, pp. 22-30
-
-
Wako, H.1
Endo, S.2
-
43
-
-
84904811832
-
Imods: Internal coordinates normal mode analysis server
-
López-Blanco, J.R., Aliaga, J.I., Quintana-Ortí, E.S. and Chacón, P. (2014) iMODS: internal coordinates normal mode analysis server. Nucleic Acids Res., 42, W271-W276.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W271-W276
-
-
López-Blanco, J.R.1
Aliaga, J.I.2
Quintana-Ortí, E.S.3
Chacón, P.4
-
44
-
-
84938925674
-
The anisotropic network model web server at 2015 (ANM 2.0)
-
Eyal, E., Lum, G. and Bahar, I. (2015) The Anisotropic Network Model web server at 2015 (ANM 2.0). Bioinformatics, 31, 1487-1489.
-
(2015)
Bioinformatics
, vol.31
, pp. 1487-1489
-
-
Eyal, E.1
Lum, G.2
Bahar, I.3
-
45
-
-
84979862382
-
ENCoM server: Exploring protein conformational space and the effect of mutations on protein function and stability
-
Frappier, V., Chartier, M. and Najmanovich, R.J. (2015) ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability. Nucleic Acids Res., 43, W395-W400.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W395-W400
-
-
Frappier, V.1
Chartier, M.2
Najmanovich, R.J.3
-
46
-
-
84946045336
-
The RCSB protein data bank: Views of structural biology for basic and applied research and education
-
Rose, P.W., Prlic, A., Bi, C., Bluhm, W.F., Christie, C.H., Dutta, S., Green, R.K., Goodsell, D.S., Westbrook, J.D., Woo, J. et al. (2015) The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res., 43, D345-D356.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D345-D356
-
-
Rose, P.W.1
Prlic, A.2
Bi, C.3
Bluhm, W.F.4
Christie, C.H.5
Dutta, S.6
Green, R.K.7
Goodsell, D.S.8
Westbrook, J.D.9
Woo, J.10
-
47
-
-
0029919190
-
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading
-
Miyazawa, S. and Jernigan, R.L. (1996) Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. J. Mol. Biol., 256, 623-644.
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 623-644
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
48
-
-
79959666296
-
Models with energy penalty on interresidue rotation address insufficiencies of conventional elastic network models
-
Yang, L.W. (2011) Models with energy penalty on interresidue rotation address insufficiencies of conventional elastic network models. Biophys. J., 100, 1784-1793.
-
(2011)
Biophys. J.
, vol.100
, pp. 1784-1793
-
-
Yang, L.W.1
-
49
-
-
84897404290
-
Switching demethylation activities between AlkB family RNA/DNA demethylases through exchange of active-site residues
-
Zhu, C. and Yi, C. (2014) Switching demethylation activities between AlkB Family RNA/DNA demethylases through exchange of active-site residues. Angew. Chem. Int. Ed., 53, 3659-3662.
-
(2014)
Angew. Chem. Int. Ed.
, vol.53
, pp. 3659-3662
-
-
Zhu, C.1
Yi, C.2
-
50
-
-
0000216012
-
Collective protein dynamics and nuclear spin relaxation
-
Brüschweiler, R. (1995) Collective protein dynamics and nuclear spin relaxation. J. Chem. Phys., 102, 3396-3403.
-
(1995)
J. Chem. Phys.
, vol.102
, pp. 3396-3403
-
-
Brüschweiler, R.1
-
51
-
-
33749521415
-
Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data
-
Kondrashov, D.A., Cui, Q. and Phillips, G.N. Jr (2006) Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data. Biophys. J., 91, 2760-2767.
-
(2006)
Biophys. J.
, vol.91
, pp. 2760-2767
-
-
Kondrashov, D.A.1
Cui, Q.2
Phillips, G.N.3
-
52
-
-
67649412163
-
All-atom contact model for understanding protein dynamics from crystallographic B-factors
-
Li, D.W. and Bruschweiler, R. (2009) All-atom contact model for understanding protein dynamics from crystallographic B-factors. Biophys. J., 96, 3074-3081.
-
(2009)
Biophys. J.
, vol.96
, pp. 3074-3081
-
-
Li, D.W.1
Bruschweiler, R.2
-
53
-
-
70449923870
-
A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations
-
Liu, L., Koharudin, L.M., Gronenborn, A.M. and Bahar, I. (2009) A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations. Proteins, 77, 927-939.
-
(2009)
Proteins
, vol.77
, pp. 927-939
-
-
Liu, L.1
Koharudin, L.M.2
Gronenborn, A.M.3
Bahar, I.4
-
54
-
-
84890534523
-
Elastic network models of nucleic acids flexibility
-
Setny, P. and Zacharias, M. (2013) Elastic network models of nucleic acids flexibility. J. Chem. Theory Comput., 9, 5460-5470.
-
(2013)
J. Chem. Theory Comput.
, vol.9
, pp. 5460-5470
-
-
Setny, P.1
Zacharias, M.2
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