메뉴 건너뛰기




Volumn 48, Issue 4, 2002, Pages 682-695

Normal mode analysis of macromolecular motions in a database framework: Developing mode concentration as a useful classifying statistic

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPARATIVE STUDY; CORRELATION ANALYSIS; DATA BASE; GEOMETRY; MACROMOLECULE; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTEIN TRANSPORT; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; TRANSPORT KINETICS; VALIDATION PROCESS; X RAY CRYSTALLOGRAPHY;

EID: 0036721233     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10168     Document Type: Article
Times cited : (232)

References (80)
  • 25
    • 0033136019 scopus 로고    scopus 로고
    • Investigating a back door mechanism of actin phosphate release by steered molecular dynamics
    • (1999) Proteins , vol.35 , pp. 262-273
    • Wriggers, W.1    Schulten, K.2
  • 28
    • 0022852062 scopus 로고
    • Computer simulations of macromolecular dynamics: Models for vibrational spectroscopy and x-ray refinement
    • (1986) Ann N Y Acad Sci , vol.482 , pp. 24-43
    • Levy, R.M.1
  • 37
    • 0030599027 scopus 로고    scopus 로고
    • Analysis of the low-frequency normal modes of the R state of aspartate transcarbamylase and a comparison with the T state modes
    • (1996) J Mol Biol , vol.261 , pp. 490-506
    • Thomas, A.1    Field, M.J.2    Perahia, D.3
  • 39
    • 0032533790 scopus 로고    scopus 로고
    • Analysis of domain motions by approximate normal mode calculations
    • (1998) Proteins , vol.33 , pp. 417-429
    • Hinsen, K.1
  • 43
    • 0020488742 scopus 로고
    • Collective variable description of small-amplitude conformational fluctuations in a globular protein
    • (1982) Nature , vol.296 , pp. 776
    • Noguity, T.1    Go, N.2
  • 49
    • 0025066772 scopus 로고
    • Normal mode analysis of human lysozyme: Study of the relative motion of the two domains and characterization of the harmonic motion
    • (1990) Proteins , vol.8 , pp. 258-279
    • Gibrat, J.F.1
  • 50
    • 0025333959 scopus 로고
    • Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering
    • (1990) Biophy J , vol.58 , pp. 243-251
    • Cusack, S.1
  • 55
    • 0029374782 scopus 로고
    • Computation of low-frequency normal modes in macromolecules: Improvements to the method of diagonalization in a mixed basis and application to hemoglobin
    • (1995) Comput Chem , vol.19 , pp. 241-246
    • Perahia, D.1    Mouawad, L.2
  • 58
    • 0030888546 scopus 로고    scopus 로고
    • Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme
    • (1997) Proteins , vol.27 , pp. 425-437
    • Hayward, S.1    Kitao, A.2    Berendsen, H.J.3
  • 59
    • 0034677669 scopus 로고    scopus 로고
    • Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
    • (2000) J Mol Biol , vol.297 , pp. 233-249
    • Wilson, C.A.1    Kreychman, J.2    Gerstein, M.3
  • 63
    • 0031938039 scopus 로고    scopus 로고
    • Comprehensive assessment of automatic structural alignment against a manual standard, the Scop classification of proteins
    • (1998) Protein Sci , vol.7 , pp. 445-456
    • Gerstein, M.1    Levitt, M.2
  • 71
    • 0001962564 scopus 로고    scopus 로고
    • The molecular modeling toolkit: A new approach to molecular simulations
    • (2000) J Comp Chem , pp. 79-85
    • Hinsen, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.