-
1
-
-
0030888546
-
Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme
-
Hayward S, Kitao A, Berendsen HJ (1997) Model-free methods of analyzing domain motions in proteins from simulation: a comparison of normal mode analysis and molecular dynamics simulation of lysozyme. Proteins 27: 425-437.
-
(1997)
Proteins
, vol.27
, pp. 425-437
-
-
Hayward, S.1
Kitao, A.2
Berendsen, H.J.3
-
2
-
-
0034758487
-
The role of conformational flexibility in prion propagation and maintenance for Sup35p
-
Scheibel T, Lindquist SL (2001) The role of conformational flexibility in prion propagation and maintenance for Sup35p. Nat Struct Biol 8:958-962.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 958-962
-
-
Scheibel, T.1
Lindquist, S.L.2
-
4
-
-
54549098184
-
Target flexibility: An emerging consideration in drug discovery and design
-
Cozzini P, Kellogg GE, Spyrakis F, Abraham DJ, Costantino G, Emerson A, Fanelli F, Gohlke H, Kuhn LA, Morris GM, Orozco M, Pertinez TA, Rizzi M, Sotriffer CA (2008) Target flexibility: an emerging consideration in drug discovery and design. J Med Chem 51:6237-6255.
-
(2008)
J Med Chem
, vol.51
, pp. 6237-6255
-
-
Cozzini, P.1
Kellogg, G.E.2
Spyrakis, F.3
Abraham, D.J.4
Costantino, G.5
Emerson, A.6
Fanelli, F.7
Gohlke, H.8
Kuhn, L.A.9
Morris, G.M.10
Orozco, M.11
Pertinez, T.A.12
Rizzi, M.13
Sotriffer, C.A.14
-
5
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein M, Lesk AM, Chothia C (1994) Structural mechanisms for domain movements in proteins. Biochemistry 33:6739-6749.
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
6
-
-
33645139056
-
-
Eds, Rigidity theory and applications. New York, NY: Kluwer Academic/Plenum Publishers
-
Gerstein M, Jansen R, Johnson T, Tsai J, Krebs W, Studying macromolecular motions in a database framework: from structure to sequence. In: Thorpe M, Dux-bury P, Eds. (1999) Rigidity theory and applications. New York, NY: Kluwer Academic/Plenum Publishers.
-
(1999)
Studying macromolecular motions in a database framework: From structure to sequence
-
-
Gerstein, M.1
Jansen, R.2
Johnson, T.3
Tsai, J.4
Krebs, W.5
-
7
-
-
59949093923
-
-
Krebs W, The database of macromolecular motions: a standardized system for analyzing and visualizing macro-molecular motions in a database framework. Dissertation (2001) Molecular Biophysics and Biochemistry. New Haven: Yale University, p 288.
-
Krebs W, The database of macromolecular motions: a standardized system for analyzing and visualizing macro-molecular motions in a database framework. Dissertation (2001) Molecular Biophysics and Biochemistry. New Haven: Yale University, p 288.
-
-
-
-
8
-
-
0030939896
-
A new method for modeling large-scale rearrangements of protein domains
-
Maiorov V, Abagyan R (1997) A new method for modeling large-scale rearrangements of protein domains. Proteins 27:410-424.
-
(1997)
Proteins
, vol.27
, pp. 410-424
-
-
Maiorov, V.1
Abagyan, R.2
-
9
-
-
0029150760
-
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme
-
Zhang XJ, Wozniak JA, Matthews BW (1995) Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. J Mol Biol 250:527-552.
-
(1995)
J Mol Biol
, vol.250
, pp. 527-552
-
-
Zhang, X.J.1
Wozniak, J.A.2
Matthews, B.W.3
-
10
-
-
0032006209
-
Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
-
Hayward S, Berendsen HJ (1998) Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme. Proteins 30:144-154.
-
(1998)
Proteins
, vol.30
, pp. 144-154
-
-
Hayward, S.1
Berendsen, H.J.2
-
11
-
-
0036681439
-
Flexible protein alignment and hinge detection
-
Shatsky M, Nussinov R, Wolfson HJ (2002) Flexible protein alignment and hinge detection. Proteins 48:242-256.
-
(2002)
Proteins
, vol.48
, pp. 242-256
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.J.3
-
12
-
-
10344230919
-
Automatic domain decomposition of proteins by a Gaussian network model
-
Kundu S, Sorensen DC, Phillips GN, Jr (2004) Automatic domain decomposition of proteins by a Gaussian network model. Proteins 57:725-733.
-
(2004)
Proteins
, vol.57
, pp. 725-733
-
-
Kundu, S.1
Sorensen, D.C.2
Phillips Jr, G.N.3
-
13
-
-
0027528934
-
Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers
-
Gerstein M, Schulz G, Chothia C (1993) Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers. J Mol Biol 229:494-501.
-
(1993)
J Mol Biol
, vol.229
, pp. 494-501
-
-
Gerstein, M.1
Schulz, G.2
Chothia, C.3
-
14
-
-
0035798394
-
The "open" and "closed" structures of the type-C inorganic pyrophosphatases from Bacillus subtilis and Streptococcus gordonii
-
Ahn S, Milner AJ, Futterer K, Konopka M, Ilias M, Young TW, White SA (2001) The "open" and "closed" structures of the type-C inorganic pyrophosphatases from Bacillus subtilis and Streptococcus gordonii. J Mol Biol 313:797-811.
-
(2001)
J Mol Biol
, vol.313
, pp. 797-811
-
-
Ahn, S.1
Milner, A.J.2
Futterer, K.3
Konopka, M.4
Ilias, M.5
Young, T.W.6
White, S.A.7
-
15
-
-
0032511137
-
Multiple open forms of ribose-binding protein trace the path of its conformational change
-
Bjorkman AJ, Mowbray SL (1998) Multiple open forms of ribose-binding protein trace the path of its conformational change. J Mol Biol 279:651-664.
-
(1998)
J Mol Biol
, vol.279
, pp. 651-664
-
-
Bjorkman, A.J.1
Mowbray, S.L.2
-
16
-
-
0027953575
-
Binary discontinuous compact protein domains
-
Zehfus MH (1994) Binary discontinuous compact protein domains. Protein Eng 7:335-340.
-
(1994)
Protein Eng
, vol.7
, pp. 335-340
-
-
Zehfus, M.H.1
-
17
-
-
0032189646
-
Dictionary of recurrent domains in protein structures
-
Holm L, Sander C (1998) Dictionary of recurrent domains in protein structures. Proteins 33:88-96.
-
(1998)
Proteins
, vol.33
, pp. 88-96
-
-
Holm, L.1
Sander, C.2
-
18
-
-
0028290005
-
Parser for protein folding units
-
Holm L, Sander C (1994) Parser for protein folding units. Proteins 19:256-268.
-
(1994)
Proteins
, vol.19
, pp. 256-268
-
-
Holm, L.1
Sander, C.2
-
19
-
-
0028891784
-
Identification and analysis of domains in proteins
-
Islam SA, Luo J, Sternberg MJ (1995) Identification and analysis of domains in proteins. Protein Eng 8:513-525.
-
(1995)
Protein Eng
, vol.8
, pp. 513-525
-
-
Islam, S.A.1
Luo, J.2
Sternberg, M.J.3
-
20
-
-
0028943588
-
Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
-
Siddiqui AS, Barton GJ (1995) Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci 4:872-884.
-
(1995)
Protein Sci
, vol.4
, pp. 872-884
-
-
Siddiqui, A.S.1
Barton, G.J.2
-
21
-
-
0028937153
-
A procedure for detecting structural domains in proteins
-
Swindells MB (1995) A procedure for detecting structural domains in proteins. Protein Sci 4:103-112.
-
(1995)
Protein Sci
, vol.4
, pp. 103-112
-
-
Swindells, M.B.1
-
22
-
-
0028907319
-
A procedure for the automatic determination of hydrophobic cores in protein structures
-
Swindells MB (1995) A procedure for the automatic determination of hydrophobic cores in protein structures. Protein Sci 4:93-102.
-
(1995)
Protein Sci
, vol.4
, pp. 93-102
-
-
Swindells, M.B.1
-
23
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter J, Merritt EA (2006) Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr D62:439-450.
-
(2006)
Acta Crystallogr
, vol.D62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
24
-
-
34547650902
-
FlexOracle: Predicting flexible hinges by identification of stable domains
-
Flores SC, Gerstein MB (2007) FlexOracle: predicting flexible hinges by identification of stable domains. BMC Bioinformatics 8:215.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 215
-
-
Flores, S.C.1
Gerstein, M.B.2
-
25
-
-
34447268992
-
Hinge Atlas: Relating protein sequence to sites of structural flexibility
-
Flores SC, Lu LJ, Yang J, Carriero N, Gerstein MB (2007) Hinge Atlas: relating protein sequence to sites of structural flexibility. BMC Bioinformatics 8:167.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 167
-
-
Flores, S.C.1
Lu, L.J.2
Yang, J.3
Carriero, N.4
Gerstein, M.B.5
-
26
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen K (1998) Analysis of domain motions by approximate normal mode calculations. Proteins 33:417-429.
-
(1998)
Proteins
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
28
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar I, Atilgan AR, Erman B (1997) Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des 2:173-181.
-
(1997)
Fold Des
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
29
-
-
52249099229
-
HingeMaster: Normal mode hinge prediction approach and integration of complementary predictors
-
Flores SC, Keating KS, Painter J, Morcos FG, Nguyen K, Merritt E, Kuhn LA, Gerstein M (2008) HingeMaster: normal mode hinge prediction approach and integration of complementary predictors. Proteins 73:299-319.
-
(2008)
Proteins
, vol.73
, pp. 299-319
-
-
Flores, S.C.1
Keating, K.S.2
Painter, J.3
Morcos, F.G.4
Nguyen, K.5
Merritt, E.6
Kuhn, L.A.7
Gerstein, M.8
-
30
-
-
0034655949
-
The morph server: A standardized system for analyzing and visualizing macro-molecular motions in a database framework
-
Krebs WG, Gerstein M (2000) The morph server: a standardized system for analyzing and visualizing macro-molecular motions in a database framework. Nucleic Acids Res 28:1665-1675.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1665-1675
-
-
Krebs, W.G.1
Gerstein, M.2
-
31
-
-
33644873452
-
The database of macromolecular motions: New features added at the decade mark
-
Flores S, Echols N, Milburn D, Hespenheide B, Keating K, Lu J, Wells S, Yu EZ, Thorpe M, Gerstein M (2006) The database of macromolecular motions: new features added at the decade mark. Nucleic Acids Res 34: D296-D301.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Flores, S.1
Echols, N.2
Milburn, D.3
Hespenheide, B.4
Keating, K.5
Lu, J.6
Wells, S.7
Yu, E.Z.8
Thorpe, M.9
Gerstein, M.10
-
32
-
-
1842450688
-
FlexProt: Alignment of flexible protein structures without a predefinition of hinge regions
-
Shatsky M, Nussinov R, Wolfson HJ (2004) FlexProt: alignment of flexible protein structures without a predefinition of hinge regions. J Comput Biol 11:83-106.
-
(2004)
J Comput Biol
, vol.11
, pp. 83-106
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.J.3
-
33
-
-
0032847133
-
600 ps molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase
-
Tsigelny I, Greenberg JP, Cox S, Nichols WL, Taylor SS, Ten Eyck LF (1999) 600 ps molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase. Biopolymers 50:513-524.
-
(1999)
Biopolymers
, vol.50
, pp. 513-524
-
-
Tsigelny, I.1
Greenberg, J.P.2
Cox, S.3
Nichols, W.L.4
Taylor, S.S.5
Ten Eyck, L.F.6
-
34
-
-
0030595368
-
The crystal structure of glutamine-binding protein from Escherichia coli
-
Hsiao CD, Sun YJ, Rose J, Wang BC (1996) The crystal structure of glutamine-binding protein from Escherichia coli. J Mol Biol 262:225-242.
-
(1996)
J Mol Biol
, vol.262
, pp. 225-242
-
-
Hsiao, C.D.1
Sun, Y.J.2
Rose, J.3
Wang, B.C.4
-
35
-
-
0025088519
-
Studies of the domain structure of mammalian DNA polymerase beta. Identification of a discrete template binding domain
-
Kumar A, Widen SG, Williams KR, Kedar P, Karpel RL, Wilson SH (1990) Studies of the domain structure of mammalian DNA polymerase beta. Identification of a discrete template binding domain. J Biol Chem 265: 2124-2131.
-
(1990)
J Biol Chem
, vol.265
, pp. 2124-2131
-
-
Kumar, A.1
Widen, S.G.2
Williams, K.R.3
Kedar, P.4
Karpel, R.L.5
Wilson, S.H.6
-
36
-
-
0026536335
-
Solution structure of a calmodulin-target peptide complex by multidimensional NMR
-
Ikura M, Clore GM, Gronenborn AM, Zhu G, Klee CB, Bax A (1992) Solution structure of a calmodulin-target peptide complex by multidimensional NMR. Science 256:632-638.
-
(1992)
Science
, vol.256
, pp. 632-638
-
-
Ikura, M.1
Clore, G.M.2
Gronenborn, A.M.3
Zhu, G.4
Klee, C.B.5
Bax, A.6
-
37
-
-
0026794065
-
Target enzyme recognition by calmodulin: 2.4 A structure of a calmodulin-peptide complex
-
Meador WE, Means AR, Quiocho FA (1992) Target enzyme recognition by calmodulin: 2.4 A structure of a calmodulin-peptide complex. Science 257:1251-1255.
-
(1992)
Science
, vol.257
, pp. 1251-1255
-
-
Meador, W.E.1
Means, A.R.2
Quiocho, F.A.3
-
38
-
-
0029959124
-
Bending of the calmodulin central helix: A theoretical study
-
van der Spoel D, de Groot BL, Hayward S, Berendsen HJ, Vogel HJ (1996) Bending of the calmodulin central helix: a theoretical study. Protein Sci 5:2044-2053.
-
(1996)
Protein Sci
, vol.5
, pp. 2044-2053
-
-
van der Spoel, D.1
de Groot, B.L.2
Hayward, S.3
Berendsen, H.J.4
Vogel, H.J.5
-
40
-
-
0031592453
-
Predicting conserved water-mediated and polar ligand interactions in proteins using a K-nearest-neighbors genetic algorithm
-
Raymer ML, Sanschagrin PC, Punch WF, Venkataraman S, Goodman ED, Kuhn LA (1997) Predicting conserved water-mediated and polar ligand interactions in proteins using a K-nearest-neighbors genetic algorithm. J Mol Biol 265:445-464.
-
(1997)
J Mol Biol
, vol.265
, pp. 445-464
-
-
Raymer, M.L.1
Sanschagrin, P.C.2
Punch, W.F.3
Venkataraman, S.4
Goodman, E.D.5
Kuhn, L.A.6
-
41
-
-
0242490496
-
Covariation of backbone motion throughout a small protein domain
-
Mayer KL, Earley MR, Gupta S, Pichumani K, Regan L, Stone MJ (2003) Covariation of backbone motion throughout a small protein domain. Nat Struct Biol 10:962-965.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 962-965
-
-
Mayer, K.L.1
Earley, M.R.2
Gupta, S.3
Pichumani, K.4
Regan, L.5
Stone, M.J.6
-
43
-
-
0038174853
-
Distilling the essential features of a protein surface for improving protein-ligand docking, scoring, and virtual screening
-
Zavodszky MI, Sanschagrin PC, Korde RS, Kuhn LA (2002) Distilling the essential features of a protein surface for improving protein-ligand docking, scoring, and virtual screening. J Comput Aided Mol Des 16:883-902.
-
(2002)
J Comput Aided Mol Des
, vol.16
, pp. 883-902
-
-
Zavodszky, M.I.1
Sanschagrin, P.C.2
Korde, R.S.3
Kuhn, L.A.4
-
44
-
-
4544310320
-
Modeling correlated main-chain motions in proteins for flexible molecular recognition
-
Zavodszky MI, Lei M, Thorpe MF, Day AR, Kuhn LA (2004) Modeling correlated main-chain motions in proteins for flexible molecular recognition. Proteins 57: 243-261.
-
(2004)
Proteins
, vol.57
, pp. 243-261
-
-
Zavodszky, M.I.1
Lei, M.2
Thorpe, M.F.3
Day, A.R.4
Kuhn, L.A.5
-
45
-
-
33646799407
-
Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory
-
Ahmed A, Gohlke H (2006) Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory. Proteins 63:1038-1051.
-
(2006)
Proteins
, vol.63
, pp. 1038-1051
-
-
Ahmed, A.1
Gohlke, H.2
-
46
-
-
0002133110
-
MBO(N)D: A multi-body method for long-time molecular dynamics simulations
-
Chun HM, Padilla CE, Chin DN, Watanabe M, Karlov VI, Alper HE, Soosaar K, Blair KB, Becker OM, Caves LSD, Nagle R, Haney D, Farmer B (2000) MBO(N)D: a multi-body method for long-time molecular dynamics simulations. J Comput Chem 21:159-184.
-
(2000)
J Comput Chem
, vol.21
, pp. 159-184
-
-
Chun, H.M.1
Padilla, C.E.2
Chin, D.N.3
Watanabe, M.4
Karlov, V.I.5
Alper, H.E.6
Soosaar, K.7
Blair, K.B.8
Becker, O.M.9
Caves, L.S.D.10
Nagle, R.11
Haney, D.12
Farmer, B.13
-
47
-
-
0028095182
-
Buried waters and internal cavities in monomeric proteins
-
Williams MA, Goodfellow JM, Thornton JM (1994) Buried waters and internal cavities in monomeric proteins. Protein Sci 3:1224-1235.
-
(1994)
Protein Sci
, vol.3
, pp. 1224-1235
-
-
Williams, M.A.1
Goodfellow, J.M.2
Thornton, J.M.3
-
48
-
-
3042806330
-
Change in protein flexibility upon complex formation: Analysis of Ras-Raf using molecular dynamics and a molecular framework approach
-
Gohlke H, Kuhn LA, Case DA (2004) Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach. Proteins 56:322-337.
-
(2004)
Proteins
, vol.56
, pp. 322-337
-
-
Gohlke, H.1
Kuhn, L.A.2
Case, D.A.3
-
49
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E, Hess B, van der Spoel D (2001) GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Model 7:306-317.
-
(2001)
J Mol Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
50
-
-
0036888379
-
Identifying protein folding cores from the evolution of flexible regions during unfolding
-
Hespenheide BM, Rader AJ, Thorpe MF, Kuhn LA (2002) Identifying protein folding cores from the evolution of flexible regions during unfolding. J Mol Graph Model 21:195-207.
-
(2002)
J Mol Graph Model
, vol.21
, pp. 195-207
-
-
Hespenheide, B.M.1
Rader, A.J.2
Thorpe, M.F.3
Kuhn, L.A.4
-
53
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
54
-
-
0001328416
-
Structure of the mammalian catalytic subunit of cAMP-dependent protein kinase and an inhibitor peptide displays an open conformation
-
Karlsson R, Zheng J, Xuong N, Taylor SS, Sowadski JM (1993) Structure of the mammalian catalytic subunit of cAMP-dependent protein kinase and an inhibitor peptide displays an open conformation. Acta Crystallogr D Biol Crystallogr 49:381-388.
-
(1993)
Acta Crystallogr D Biol Crystallogr
, vol.49
, pp. 381-388
-
-
Karlsson, R.1
Zheng, J.2
Xuong, N.3
Taylor, S.S.4
Sowadski, J.M.5
-
55
-
-
0000127673
-
2.2 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor
-
Zheng J, Trafny EA, Knighton DR, Xuong NH, Taylor SS, Ten Eyck LF, Sowadski JM (1993) 2.2 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor. Acta Crystallogr D Biol Crystallogr 49:362-365.
-
(1993)
Acta Crystallogr D Biol Crystallogr
, vol.49
, pp. 362-365
-
-
Zheng, J.1
Trafny, E.A.2
Knighton, D.R.3
Xuong, N.H.4
Taylor, S.S.5
Ten Eyck, L.F.6
Sowadski, J.M.7
-
57
-
-
0027235488
-
Three-dimensional structures of the periplasmic lysine/arginine/ornithine- binding protein with and without a ligand
-
Oh BH, Pandit J, Kang CH, Nikaido K, Gokcen S, Ames GF, Kim SH (1993) Three-dimensional structures of the periplasmic lysine/arginine/ornithine- binding protein with and without a ligand. J Biol Chem 268:11348-11355.
-
(1993)
J Biol Chem
, vol.268
, pp. 11348-11355
-
-
Oh, B.H.1
Pandit, J.2
Kang, C.H.3
Nikaido, K.4
Gokcen, S.5
Ames, G.F.6
Kim, S.H.7
-
58
-
-
0026079373
-
The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 A resolution
-
Diederichs K, Schulz GE (1991) The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 A resolution. J Mol Biol 217:541-549.
-
(1991)
J Mol Biol
, vol.217
, pp. 541-549
-
-
Diederichs, K.1
Schulz, G.E.2
-
59
-
-
0026544877
-
Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state
-
Muller CW, Schulz GE (1992) Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state. J Mol Biol 224:159-177.
-
(1992)
J Mol Biol
, vol.224
, pp. 159-177
-
-
Muller, C.W.1
Schulz, G.E.2
-
60
-
-
0032562651
-
The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: Comparisons with other amino acid binding proteins
-
Sun YJ, Rose J, Wang BC, Hsiao CD (1998) The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteins. J Mol Biol 278:219-229.
-
(1998)
J Mol Biol
, vol.278
, pp. 219-229
-
-
Sun, Y.J.1
Rose, J.2
Wang, B.C.3
Hsiao, C.D.4
-
61
-
-
0028049441
-
Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP
-
Pelletier H, Sawaya MR, Kumar A, Wilson SH, Kraut J (1994) Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science 264:1891-1903.
-
(1994)
Science
, vol.264
, pp. 1891-1903
-
-
Pelletier, H.1
Sawaya, M.R.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
62
-
-
0028136070
-
Crystal structure of rat DNA polymerase beta: Evidence for a common polymerase mechanism
-
Sawaya MR, Pelletier H, Kumar A, Wilson SH, Kraut J (1994) Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science 264:1930-1935.
-
(1994)
Science
, vol.264
, pp. 1930-1935
-
-
Sawaya, M.R.1
Pelletier, H.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
63
-
-
0029159794
-
Solution structure of calcium-free calmodulin
-
Kuboniwa H, Tjandra N, Grzesiek S, Ren H, Klee CB, Bax A (1995) Solution structure of calcium-free calmodulin. Nat Struct Biol 2:768-776.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 768-776
-
-
Kuboniwa, H.1
Tjandra, N.2
Grzesiek, S.3
Ren, H.4
Klee, C.B.5
Bax, A.6
-
65
-
-
0027945890
-
Probing protein-protein interactions. The ribose-binding protein in bacterial transport and chemotaxis
-
Bjorkman AJ, Binnie RA, Zhang H, Cole LB, Hermodson MA, Mowbray SL (1994) Probing protein-protein interactions. The ribose-binding protein in bacterial transport and chemotaxis. J Biol Chem 269:30206-30211.
-
(1994)
J Biol Chem
, vol.269
, pp. 30206-30211
-
-
Bjorkman, A.J.1
Binnie, R.A.2
Zhang, H.3
Cole, L.B.4
Hermodson, M.A.5
Mowbray, S.L.6
-
66
-
-
0028354429
-
Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR
-
Gallagher T, Alexander P, Bryan P, Gilliland GL (1994) Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR. Biochemistry 33:4721-4729.
-
(1994)
Biochemistry
, vol.33
, pp. 4721-4729
-
-
Gallagher, T.1
Alexander, P.2
Bryan, P.3
Gilliland, G.L.4
-
67
-
-
0033135167
-
Crystal structure of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, a potential target for the development of novel antimicrobial agents
-
Xiao B, Shi G, Chen X, Yan H, Ji X (1999) Crystal structure of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, a potential target for the development of novel antimicrobial agents. Structure 7:489-496.
-
(1999)
Structure
, vol.7
, pp. 489-496
-
-
Xiao, B.1
Shi, G.2
Chen, X.3
Yan, H.4
Ji, X.5
-
68
-
-
0032561136
-
X-ray structures and analysis of 11 cyclosporin derivatives complexed with cyclophilin A
-
Kallen J, Mikol V, Taylor P, Walkinshaw MD (1998) X-ray structures and analysis of 11 cyclosporin derivatives complexed with cyclophilin A. J Mol Biol 283:435-449.
-
(1998)
J Mol Biol
, vol.283
, pp. 435-449
-
-
Kallen, J.1
Mikol, V.2
Taylor, P.3
Walkinshaw, M.D.4
-
69
-
-
0023660798
-
Structure and refinement at 1.8 A resolution of the aspartic proteinase from Rhizopus chinensis
-
Suguna K, Bott RR, Padlan EA, Subramanian E, Sheriff S, Cohen GH, Davies DR (1987) Structure and refinement at 1.8 A resolution of the aspartic proteinase from Rhizopus chinensis. J Mol Biol 196:877-900.
-
(1987)
J Mol Biol
, vol.196
, pp. 877-900
-
-
Suguna, K.1
Bott, R.R.2
Padlan, E.A.3
Subramanian, E.4
Sheriff, S.5
Cohen, G.H.6
Davies, D.R.7
-
70
-
-
0023434194
-
Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: Implications for a mechanism of action
-
Suguna K, Padlan EA, Smith CW, Carlson WD, Davies DR (1987) Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action. Proc Natl Acad Sci USA 84: 7009-7013.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 7009-7013
-
-
Suguna, K.1
Padlan, E.A.2
Smith, C.W.3
Carlson, W.D.4
Davies, D.R.5
-
71
-
-
0025613004
-
Crystal structure of the aspartic acid-199-> asparagine mutant of chloramphenicol acetyltransferase to 2.35-A resolution: Structural consequences of disruption of a buried salt bridge
-
Gibbs MR, Moody PC, Leslie AG (1990) Crystal structure of the aspartic acid-199-> asparagine mutant of chloramphenicol acetyltransferase to 2.35-A resolution: structural consequences of disruption of a buried salt bridge. Biochemistry 29:11261-11265.
-
(1990)
Biochemistry
, vol.29
, pp. 11261-11265
-
-
Gibbs, M.R.1
Moody, P.C.2
Leslie, A.G.3
-
72
-
-
0025335792
-
Refined crystal structure of type III chloramphenicol acetyltransferase at 1.75 A resolution
-
Leslie AG (1990) Refined crystal structure of type III chloramphenicol acetyltransferase at 1.75 A resolution. J Mol Biol 213:167-186.
-
(1990)
J Mol Biol
, vol.213
, pp. 167-186
-
-
Leslie, A.G.1
-
73
-
-
0022405087
-
Electron density calculations as an extension of protein structure refinement. Streptomyces griseus protease A at 1.5 A resolution
-
Moult J, Sussman F, James MN (1985) Electron density calculations as an extension of protein structure refinement. Streptomyces griseus protease A at 1.5 A resolution. J Mol Biol 182:555-566.
-
(1985)
J Mol Biol
, vol.182
, pp. 555-566
-
-
Moult, J.1
Sussman, F.2
James, M.N.3
-
74
-
-
0019205866
-
Structures of product and inhibitor complexes of Streptomyces griseus protease A at 1.8 A resolution. A model for serine protease catalysis
-
James MN, Sielecki AR, Brayer GD, Delbaere LT, Bauer CA (1980) Structures of product and inhibitor complexes of Streptomyces griseus protease A at 1.8 A resolution. A model for serine protease catalysis. J Mol Biol 144:43-88.
-
(1980)
J Mol Biol
, vol.144
, pp. 43-88
-
-
James, M.N.1
Sielecki, A.R.2
Brayer, G.D.3
Delbaere, L.T.4
Bauer, C.A.5
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