-
1
-
-
84877870559
-
Tobacco smoking leads to extensive genome-wide changes in DNA methylation
-
Zeilinger S, Kuhnel B, Klopp N, Baurecht H, Kleinschmidt A, Gieger C, et al. Tobacco smoking leads to extensive genome-wide changes in DNA methylation. PLoS One. 2013;8, e63812.
-
(2013)
PLoS One.
, vol.8
-
-
Zeilinger, S.1
Kuhnel, B.2
Klopp, N.3
Baurecht, H.4
Kleinschmidt, A.5
Gieger, C.6
-
2
-
-
84923326770
-
DNA methylation signatures link prenatal famine exposure to growth and metabolism
-
Tobi EW, Goeman JJ, Monajemi R, Gu H, Putter H, Zhang Y, et al. DNA methylation signatures link prenatal famine exposure to growth and metabolism. Nat Commun. 2014;5:5592.
-
(2014)
Nat Commun.
, vol.5
, pp. 5592
-
-
Tobi, E.W.1
Goeman, J.J.2
Monajemi, R.3
Gu, H.4
Putter, H.5
Zhang, Y.6
-
3
-
-
84939211019
-
Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin
-
Vandiver AR, Irizarry RA, Hansen KD, Garza LA, Runarsson A, Li X, et al. Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin. Genome Biol. 2015;16:80.
-
(2015)
Genome Biol.
, vol.16
, pp. 80
-
-
Vandiver, A.R.1
Irizarry, R.A.2
Hansen, K.D.3
Garza, L.A.4
Runarsson, A.5
Li, X.6
-
4
-
-
84907483941
-
Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity
-
Saeed S, Quintin J, Kerstens HH, Rao NA, Aghajanirefah A, Matarese F, et al. Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity. Science. 2014;345:1251086.
-
(2014)
Science.
, vol.345
, pp. 1251086
-
-
Saeed, S.1
Quintin, J.2
Kerstens, H.H.3
Rao, N.A.4
Aghajanirefah, A.5
Matarese, F.6
-
5
-
-
84904605889
-
Oxidized low-density lipoprotein induces long-term proinflammatory cytokine production and foam cell formation via epigenetic reprogramming of monocytes
-
Bekkering S, Quintin J, Joosten LA, van der Meer JW, Netea MG, Riksen NP. Oxidized low-density lipoprotein induces long-term proinflammatory cytokine production and foam cell formation via epigenetic reprogramming of monocytes. Arterioscler Thromb Vasc Biol. 2014;34:1731-8.
-
(2014)
Arterioscler Thromb Vasc Biol.
, vol.34
, pp. 1731-1738
-
-
Bekkering, S.1
Quintin, J.2
Joosten, L.A.3
Meer, J.W.4
Netea, M.G.5
Riksen, N.P.6
-
6
-
-
79951669207
-
The immune system in atherosclerosis
-
Hansson GK, Hermansson A. The immune system in atherosclerosis. Nat Immunol. 2011;12:204-12.
-
(2011)
Nat Immunol.
, vol.12
, pp. 204-212
-
-
Hansson, G.K.1
Hermansson, A.2
-
7
-
-
84903954905
-
Methylation at CPT1A locus is associated with lipoprotein subfraction profiles
-
Frazier-Wood AC, Aslibekyan S, Absher DM, Hopkins PN, Sha J, Tsai MY, et al. Methylation at CPT1A locus is associated with lipoprotein subfraction profiles. J Lipid Res. 2014;55:1324-30.
-
(2014)
J Lipid Res.
, vol.55
, pp. 1324-1330
-
-
Frazier-Wood, A.C.1
Aslibekyan, S.2
Absher, D.M.3
Hopkins, P.N.4
Sha, J.5
Tsai, M.Y.6
-
8
-
-
84904023117
-
Robust validation of methylation levels association at CPT1A locus with lipid plasma levels
-
Gagnon F, Aissi D, Carrie A, Morange PE, Tregouet DA. Robust validation of methylation levels association at CPT1A locus with lipid plasma levels. J Lipid Res. 2014;55:1189-91.
-
(2014)
J Lipid Res.
, vol.55
, pp. 1189-1191
-
-
Gagnon, F.1
Aissi, D.2
Carrie, A.3
Morange, P.E.4
Tregouet, D.A.5
-
9
-
-
84942908108
-
DNA methylation of lipid-related genes affects blood lipid levels
-
Pfeiffer L, Wahl S, Pilling LC, Reischl E, Sandling JK, Kunze S, et al. DNA methylation of lipid-related genes affects blood lipid levels. Circ Cardiovasc Genet. 2015;8:334-42.
-
(2015)
Circ Cardiovasc Genet.
, vol.8
, pp. 334-342
-
-
Pfeiffer, L.1
Wahl, S.2
Pilling, L.C.3
Reischl, E.4
Sandling, J.K.5
Kunze, S.6
-
10
-
-
84880924522
-
From promises to practical strategies in epigenetic epidemiology
-
Mill J, Heijmans BT. From promises to practical strategies in epigenetic epidemiology. Nat Rev Genet. 2013;14:585-94.
-
(2013)
Nat Rev Genet.
, vol.14
, pp. 585-594
-
-
Mill, J.1
Heijmans, B.T.2
-
11
-
-
84887099827
-
Discovery and refinement of loci associated with lipid levels
-
Global Lipids Genetics C, Willer CJ, Schmidt EM, Sengupta S, Peloso GM, Gustafsson S, et al. Discovery and refinement of loci associated with lipid levels. Nat Genet. 2013;45:1274-83.
-
(2013)
Nat Genet
, vol.45
, pp. 1274-1283
-
-
Willer, C.J.1
Schmidt, E.M.2
Sengupta, S.3
Peloso, G.M.4
Gustafsson, S.5
-
12
-
-
84906838227
-
Mendelian randomization: genetic anchors for causal inference in epidemiological studies
-
Davey Smith G, Hemani G. Mendelian randomization: genetic anchors for causal inference in epidemiological studies. Hum Mol Genet. 2014;23:R89-98.
-
(2014)
Hum Mol Genet.
, vol.23
, pp. R89-98
-
-
Davey Smith, G.1
Hemani, G.2
-
13
-
-
84858648623
-
Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease
-
Relton CL, Davey SG. Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease. Int J Epidemiol. 2012;41:161-76.
-
(2012)
Int J Epidemiol.
, vol.41
, pp. 161-176
-
-
Relton, C.L.1
Davey, S.G.2
-
15
-
-
84886426512
-
Calculating statistical power in Mendelian randomization studies
-
Brion MJ, Shakhbazov K, Visscher PM. Calculating statistical power in Mendelian randomization studies. Int J Epidemiol. 2013;42:1497-501.
-
(2013)
Int J Epidemiol.
, vol.42
, pp. 1497-1501
-
-
Brion, M.J.1
Shakhbazov, K.2
Visscher, P.M.3
-
16
-
-
78651552406
-
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
-
Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, et al. DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 2011;12:R10.
-
(2011)
Genome Biol.
, vol.12
, pp. R10
-
-
Bell, J.T.1
Pai, A.A.2
Pickrell, J.K.3
Gaffney, D.J.4
Pique-Regi, R.5
Degner, J.F.6
-
17
-
-
84936755918
-
Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression
-
Bowden J, Davey Smith G, Burgess S. Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression. Int J Epidemiol. 2015;44:512-25.
-
(2015)
Int J Epidemiol.
, vol.44
, pp. 512-525
-
-
Bowden, J.1
Davey Smith, G.2
Burgess, S.3
-
18
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics C, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, et al. Integrative analysis of 111 reference human epigenomes. Nature. 2015;518:317-30.
-
(2015)
Nature.
, vol.518
, pp. 317-330
-
-
Roadmap Epigenomics, C.1
Kundaje, A.2
Meuleman, W.3
Ernst, J.4
Bilenky, M.5
Yen, A.6
-
19
-
-
0031043030
-
The mitochondrial carnitine palmitoyltransferase system. From concept to molecular analysis
-
McGarry JD, Brown NF. The mitochondrial carnitine palmitoyltransferase system. From concept to molecular analysis. Eur J Biochem. 1997;244:1-14.
-
(1997)
Eur J Biochem
, vol.244
, pp. 1-14
-
-
McGarry, J.D.1
Brown, N.F.2
-
20
-
-
39849102805
-
Regulation of sterol synthesis in eukaryotes
-
Espenshade PJ, Hughes AL. Regulation of sterol synthesis in eukaryotes. Annu Rev Genet. 2007;41:401-27.
-
(2007)
Annu Rev Genet.
, vol.41
, pp. 401-427
-
-
Espenshade, P.J.1
Hughes, A.L.2
-
21
-
-
84885551715
-
Desmosterol and DHCR24: unexpected new directions for a terminal step in cholesterol synthesis
-
Zerenturk EJ, Sharpe LJ, Ikonen E, Brown AJ. Desmosterol and DHCR24: unexpected new directions for a terminal step in cholesterol synthesis. Prog Lipid Res. 2013;52:666-80.
-
(2013)
Prog Lipid Res.
, vol.52
, pp. 666-680
-
-
Zerenturk, E.J.1
Sharpe, L.J.2
Ikonen, E.3
Brown, A.J.4
-
22
-
-
84868648516
-
The not-so-simple HDL story: is it time to revise the HDL cholesterol hypothesis?
-
Rader DJ, Tall AR. The not-so-simple HDL story: is it time to revise the HDL cholesterol hypothesis? Nat Med. 2012;18:1344-6.
-
(2012)
Nat Med.
, vol.18
, pp. 1344-1346
-
-
Rader, D.J.1
Tall, A.R.2
-
23
-
-
66349134748
-
Cholesterol feedback: from Schoenheimer's bottle to Scap's MELADL
-
Brown MS, Goldstein JL. Cholesterol feedback: from Schoenheimer's bottle to Scap's MELADL. J Lipid Res. 2009;50(Suppl):S15-27.
-
(2009)
J Lipid Res
, vol.50
, pp. S15-S27
-
-
Brown, M.S.1
Goldstein, J.L.2
-
24
-
-
85018215032
-
Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci
-
Demerath EW, Guan W, Grove ML, Aslibekyan S, Mendelson M, Zhou YH, et al. Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci. Hum Mol Genet. 2015;24:4464-79.
-
(2015)
Hum Mol Genet.
, vol.24
, pp. 4464-4479
-
-
Demerath, E.W.1
Guan, W.2
Grove, M.L.3
Aslibekyan, S.4
Mendelson, M.5
Zhou, Y.H.6
-
25
-
-
84934435676
-
Epigenome-wide association of DNA methylation markers in peripheral blood from Indian Asians and Europeans with incident type 2 diabetes: a nested case-control study
-
Chambers JC, Loh M, Lehne B, Drong A, Kriebel J, Motta V, et al. Epigenome-wide association of DNA methylation markers in peripheral blood from Indian Asians and Europeans with incident type 2 diabetes: a nested case-control study. Lancet Diabetes Endocrinol. 2015;3:526-34.
-
(2015)
Lancet Diabetes Endocrinol.
, vol.3
, pp. 526-534
-
-
Chambers, J.C.1
Loh, M.2
Lehne, B.3
Drong, A.4
Kriebel, J.5
Motta, V.6
-
26
-
-
84884736257
-
Use of allele scores as instrumental variables for Mendelian randomization
-
Burgess S, Thompson SG. Use of allele scores as instrumental variables for Mendelian randomization. Int J Epidemiol. 2013;42:1134-44.
-
(2013)
Int J Epidemiol.
, vol.42
, pp. 1134-1144
-
-
Burgess, S.1
Thompson, S.G.2
-
27
-
-
84936758183
-
Multivariable Mendelian randomization: the use of pleiotropic genetic variants to estimate causal effects
-
Burgess S, Thompson SG. Multivariable Mendelian randomization: the use of pleiotropic genetic variants to estimate causal effects. Am J Epidemiol. 2015;181:251-60.
-
(2015)
Am J Epidemiol.
, vol.181
, pp. 251-260
-
-
Burgess, S.1
Thompson, S.G.2
-
28
-
-
84908222410
-
Advances in epigenome-wide association studies for common diseases
-
Paul DS, Beck S. Advances in epigenome-wide association studies for common diseases. Trends Mol Med. 2014;20:541-3.
-
(2014)
Trends Mol Med.
, vol.20
, pp. 541-543
-
-
Paul, D.S.1
Beck, S.2
-
29
-
-
84944721667
-
Lipid changes due to fenofibrate treatment are not associated with changes in DNA methylation patterns in the GOLDN study
-
Das M, Irvin MR, Sha J, Aslibekyan S, Hidalgo B, Perry RT, et al. Lipid changes due to fenofibrate treatment are not associated with changes in DNA methylation patterns in the GOLDN study. Front Genet. 2015;6:304.
-
(2015)
Front Genet.
, vol.6
, pp. 304
-
-
Das, M.1
Irvin, M.R.2
Sha, J.3
Aslibekyan, S.4
Hidalgo, B.5
Perry, R.T.6
-
30
-
-
84901017361
-
Hypercholesterolemia-induced priming of hematopoietic stem and progenitor cells aggravates atherosclerosis
-
Seijkens T, Hoeksema MA, Beckers L, Smeets E, Meiler S, Levels J, et al. Hypercholesterolemia-induced priming of hematopoietic stem and progenitor cells aggravates atherosclerosis. FASEB J. 2014;28:2202-13.
-
(2014)
FASEB J.
, vol.28
, pp. 2202-2213
-
-
Seijkens, T.1
Hoeksema, M.A.2
Beckers, L.3
Smeets, E.4
Meiler, S.5
Levels, J.6
-
31
-
-
84966542280
-
Disease variants alter transcription factor levels and methylation of their binding sites
-
Bonder MJ, Luijk R, Zhernakova D, Moed M, Deelen P, Vermaat M, et al. Disease variants alter transcription factor levels and methylation of their binding sites. bioRxiv. 2015:033084.
-
(2015)
bioRxiv.
, pp. 033084
-
-
Bonder, M.J.1
Luijk, R.2
Zhernakova, D.3
Moed, M.4
Deelen, P.5
Vermaat, M.6
-
32
-
-
84976264546
-
Hypothesis-free identification of modulators of genetic risk factors
-
Zhernakova D, Deelen P, Vermaat M, van Iterson M, van Galen M, Arindrarto W, et al. Hypothesis-free identification of modulators of genetic risk factors. bioRxiv. 2015:033217.
-
(2015)
bioRxiv.
, pp. 033217
-
-
Zhernakova, D.1
Deelen, P.2
Vermaat, M.3
van Iterson, M.4
van Galen, M.5
Arindrarto, W.6
-
33
-
-
79952495403
-
The cross-sectional association between insulin resistance and circulating complement C3 is partly explained by plasma alanine aminotransferase, independent of central obesity and general inflammation (the CODAM study)
-
van Greevenbroek MM, Jacobs M, van der Kallen CJ, Vermeulen VM, Jansen EH, Schalkwijk CG, et al. The cross-sectional association between insulin resistance and circulating complement C3 is partly explained by plasma alanine aminotransferase, independent of central obesity and general inflammation (the CODAM study). Eur J Clin Invest. 2011;41:372-9.
-
(2011)
Eur J Clin Invest.
, vol.41
, pp. 372-379
-
-
Greevenbroek, M.M.1
Jacobs, M.2
Kallen, C.J.3
Vermeulen, V.M.4
Jansen, E.H.5
Schalkwijk, C.G.6
-
34
-
-
84941588145
-
Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics
-
Tigchelaar EF, Zhernakova A, Dekens JA, Hermes G, Baranska A, Mujagic Z, et al. Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics. BMJ Open. 2015;5, e006772.
-
(2015)
BMJ Open.
, vol.5
-
-
Tigchelaar, E.F.1
Zhernakova, A.2
Dekens, J.A.3
Hermes, G.4
Baranska, A.5
Mujagic, Z.6
-
35
-
-
29644433966
-
Evidence of genetic enrichment for exceptional survival using a family approach: the Leiden Longevity Study
-
Schoenmaker M, de Craen AJ, de Meijer PH, Beekman M, Blauw GJ, Slagboom PE, et al. Evidence of genetic enrichment for exceptional survival using a family approach: the Leiden Longevity Study. Eur J Hum Genet. 2006;14:79-84.
-
(2006)
Eur J Hum Genet.
, vol.14
, pp. 79-84
-
-
Schoenmaker, M.1
Craen, A.J.2
Meijer, P.H.3
Beekman, M.4
Blauw, G.J.5
Slagboom, P.E.6
-
36
-
-
84873901396
-
The Adult Netherlands Twin Register: twenty-five years of survey and biological data collection
-
Willemsen G, Vink JM, Abdellaoui A, den Braber A, van Beek JH, Draisma HH, et al. The Adult Netherlands Twin Register: twenty-five years of survey and biological data collection. Twin Res Hum Genet. 2013;16:271-81.
-
(2013)
Twin Res Hum Genet.
, vol.16
, pp. 271-281
-
-
Willemsen, G.1
Vink, J.M.2
Abdellaoui, A.3
Braber, A.4
Beek, J.H.5
Draisma, H.H.6
-
37
-
-
84890555012
-
The Rotterdam Study: 2014 objectives and design update
-
Hofman A, Darwish Murad S, van Duijn CM, Franco OH, Goedegebure A, Ikram MA, et al. The Rotterdam Study: 2014 objectives and design update. Eur J Epidemiol. 2014;2013(28):889-926.
-
(2014)
Eur J Epidemiol
, vol.2013
, Issue.28
, pp. 889-926
-
-
Hofman, A.1
Darwish Murad, S.2
Duijn, C.M.3
Franco, O.H.4
Goedegebure, A.5
Ikram, M.A.6
-
38
-
-
80052628820
-
Population based epidemiology of amyotrophic lateral sclerosis using capture-recapture methodology
-
Huisman MHB, de Jong SW, van Doormaal PTC, Weinreich SS, Schelhaas HJ, van der Kooi AJ, et al. Population based epidemiology of amyotrophic lateral sclerosis using capture-recapture methodology. J Neurol Neurosurg Psychiatry. 2011;82:1165-70.
-
(2011)
J Neurol Neurosurg Psychiatry.
, vol.82
, pp. 1165-1170
-
-
Huisman, M.H.B.1
Jong, S.W.2
Doormaal, P.T.C.3
Weinreich, S.S.4
Schelhaas, H.J.5
Kooi, A.J.6
-
39
-
-
0015348189
-
Estimation of the concentration of low-density lipoprotein cholesterol in plasma, without use of the preparative ultracentrifuge
-
Friedewald WT, Levy RI, Fredrickson DS. Estimation of the concentration of low-density lipoprotein cholesterol in plasma, without use of the preparative ultracentrifuge. Clin Chem. 1972;18:499-502.
-
(1972)
Clin Chem.
, vol.18
, pp. 499-502
-
-
Friedewald, W.T.1
Levy, R.I.2
Fredrickson, D.S.3
-
40
-
-
84860637797
-
DNA methylation arrays as surrogate measures of cell mixture distribution
-
Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, et al. DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinformatics. 2012;13:86.
-
(2012)
BMC Bioinformatics.
, vol.13
, pp. 86
-
-
Houseman, E.A.1
Accomando, W.P.2
Koestler, D.C.3
Christensen, B.C.4
Marsit, C.J.5
Nelson, H.H.6
-
41
-
-
33846829987
-
TheplsPackage: Principal Component and Partial Least Squares Regression inR
-
Mevik B-H, Wehrens R. TheplsPackage: Principal Component and Partial Least Squares Regression inR. J Stat Softw. 2007;18:2.
-
(2007)
J Stat Softw.
, vol.18
, pp. 2
-
-
Mevik, B-H.1
Wehrens, R.2
-
42
-
-
84904741764
-
Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90years of age
-
Deelen J, Beekman M, Uh HW, Broer L, Ayers KL, Tan Q, et al. Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90years of age. Hum Mol Genet. 2014;23:4420-32.
-
(2014)
Hum Mol Genet.
, vol.23
, pp. 4420-4432
-
-
Deelen, J.1
Beekman, M.2
Uh, H.W.3
Broer, L.4
Ayers, K.L.5
Tan, Q.6
-
43
-
-
84928813777
-
Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration
-
Deelen P, Bonder MJ, van der Velde KJ, Westra HJ, Winder E, Hendriksen D, et al. Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration. BMC Res Notes. 2014;7:901.
-
(2014)
BMC Res Notes.
, vol.7
, pp. 901
-
-
Deelen, P.1
Bonder, M.J.2
Velde, K.J.3
Westra, H.J.4
Winder, E.5
Hendriksen, D.6
-
44
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
Howie BN, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 2009;5, e1000529.
-
(2009)
PLoS Genet.
, vol.5
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
45
-
-
84905579746
-
Whole-genome sequence variation, population structure and demographic history of the Dutch population
-
Genome of the Netherlands Consortium. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat Genet. 2014;46:818-25.
-
(2014)
Nat Genet
, vol.46
, pp. 818-825
-
-
-
46
-
-
84930814243
-
Early gestation as the critical time-window for changes in the prenatal environment to affect the adult human blood methylome
-
Tobi EW, Slieker RC, Stein AD, Suchiman HE, Slagboom PE, van Zwet EW, et al. Early gestation as the critical time-window for changes in the prenatal environment to affect the adult human blood methylome. Int J Epidemiol. 2015;44:1211-23.
-
(2015)
Int J Epidemiol.
, vol.44
, pp. 1211-1223
-
-
Tobi, E.W.1
Slieker, R.C.2
Stein, A.D.3
Suchiman, H.E.4
Slagboom, P.E.5
Zwet, E.W.6
-
47
-
-
84925550941
-
MethylAid: visual and interactive quality control of large Illumina 450k datasets
-
van Iterson M, Tobi EW, Slieker RC, den Hollander W, Luijk R, Slagboom PE, et al. MethylAid: visual and interactive quality control of large Illumina 450k datasets. Bioinformatics. 2014;30:3435-7.
-
(2014)
Bioinformatics.
, vol.30
, pp. 3435-3437
-
-
Iterson, M.1
Tobi, E.W.2
Slieker, R.C.3
Hollander, W.4
Luijk, R.5
Slagboom, P.E.6
-
48
-
-
84874353239
-
Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
-
Chen YA, Lemire M, Choufani S, Butcher DT, Grafodatskaya D, Zanke BW, et al. Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray. Epigenetics. 2013;8:203-9.
-
(2013)
Epigenetics.
, vol.8
, pp. 203-209
-
-
Chen, Y.A.1
Lemire, M.2
Choufani, S.3
Butcher, D.T.4
Grafodatskaya, D.5
Zanke, B.W.6
-
49
-
-
84990924267
-
Functional normalization of 450k methylation array data improves replication in large cancer studies
-
Fortin JP, Labbe A, Lemire M, Zanke BW, Hudson TJ, Fertig EJ, et al. Functional normalization of 450k methylation array data improves replication in large cancer studies. Genome Biol. 2014;15:503.
-
(2014)
Genome Biol.
, vol.15
, pp. 503
-
-
Fortin, J.P.1
Labbe, A.2
Lemire, M.3
Zanke, B.W.4
Hudson, T.J.5
Fertig, E.J.6
-
50
-
-
84897548625
-
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
-
Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, et al. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinformatics. 2014;30:1363-9.
-
(2014)
Bioinformatics.
, vol.30
, pp. 1363-1369
-
-
Aryee, M.J.1
Jaffe, A.E.2
Corrada-Bravo, H.3
Ladd-Acosta, C.4
Feinberg, A.P.5
Hansen, K.D.6
-
52
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 2011;17:10-2.
-
(2011)
EMBnet J.
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
54
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29:15-21.
-
(2013)
Bioinformatics.
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
-
55
-
-
84858068675
-
Removing technical variability in RNA-seq data using conditional quantile normalization
-
Hansen KD, Irizarry RA, Wu ZJ. Removing technical variability in RNA-seq data using conditional quantile normalization. Biostatistics. 2012;13:204-16.
-
(2012)
Biostatistics.
, vol.13
, pp. 204-216
-
-
Hansen, K.D.1
Irizarry, R.A.2
Wu, Z.J.3
-
56
-
-
84896735766
-
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law CW, Chen Y, Shi W, Smyth GK. voom: precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 2014;15:R29.
-
(2014)
Genome Biol.
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
-
57
-
-
84926507971
-
limma powers differential expression analyses for RNA-sequencing and microarray studies
-
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43:e47.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e47
-
-
Ritchie, M.E.1
Phipson, B.2
Wu, D.3
Hu, Y.4
Law, C.W.5
Shi, W.6
-
59
-
-
0032714352
-
Genomic control for association studies
-
Devlin B, Roeder K. Genomic control for association studies. Biometrics. 1999;55:997-1004.
-
(1999)
Biometrics.
, vol.55
, pp. 997-1004
-
-
Devlin, B.1
Roeder, K.2
-
60
-
-
77958110812
-
Conducting meta-analyses in R with the metafor package
-
Viechtbauer W. Conducting meta-analyses in R with the metafor package. J Stat Softw. 2010;36:1-48.
-
(2010)
J Stat Softw.
, vol.36
, pp. 1-48
-
-
Viechtbauer, W.1
|