-
1
-
-
0023720148
-
T-cell antigen receptor genes and T-cell recognition
-
Davis M.M., & Bjorkman P.J. T-cell antigen receptor genes and T-cell recognition. Nature 334, 395-402 (1988).
-
(1988)
Nature
, vol.334
, pp. 395-402
-
-
Davis, M.M.1
Bjorkman, P.J.2
-
2
-
-
43949105866
-
Regulatory T cells and immune tolerance
-
Sakaguchi S., Yamaguchi T., Nomura T., & Ono M. Regulatory T cells and immune tolerance. Cell 133, 775-787 (2008).
-
(2008)
Cell
, vol.133
, pp. 775-787
-
-
Sakaguchi, S.1
Yamaguchi, T.2
Nomura, T.3
Ono, M.4
-
3
-
-
84859416933
-
Regulatory T cells: Mechanisms of differentiation and function
-
Josefowicz S.Z., Lu L.F., & Rudensky A.Y. Regulatory T cells: mechanisms of differentiation and function. Annu. Rev. Immunol. 30, 531-564 (2012).
-
(2012)
Annu. Rev. Immunol.
, vol.30
, pp. 531-564
-
-
Josefowicz, S.Z.1
Lu, L.F.2
Rudensky, A.Y.3
-
4
-
-
84906243997
-
The self-obsession of T cells: How TCR signaling thresholds affect fate decisions and effector function
-
Hogquist K.A., & Jameson S.C. The self-obsession of T cells: how TCR signaling thresholds affect fate decisions and effector function. Nat. Immunol. 15, 815-823 (2014).
-
(2014)
Nat. Immunol.
, vol.15
, pp. 815-823
-
-
Hogquist, K.A.1
Jameson, S.C.2
-
5
-
-
84907308588
-
Revisiting thymic positive selection and the mature T cell repertoire for antigen
-
Vrisekoop N., Monteiro J.P., Mandl J.N., & Germain R.N. Revisiting thymic positive selection and the mature T cell repertoire for antigen. Immunity 41, 181-190 (2014).
-
(2014)
Immunity
, vol.41
, pp. 181-190
-
-
Vrisekoop, N.1
Monteiro, J.P.2
Mandl, J.N.3
Germain, R.N.4
-
6
-
-
84884248064
-
Lck availability during thymic selection determines the recognition specificity of the T cell repertoire
-
Van Laethem F., et al. Lck availability during thymic selection determines the recognition specificity of the T cell repertoire. Cell 154, 1326-1341 (2013).
-
(2013)
Cell
, vol.154
, pp. 1326-1341
-
-
Van Laethem, F.1
-
7
-
-
84874244135
-
T cell-positive selection uses self-ligand binding strength to optimize repertoire recognition of foreign antigens
-
Mandl J.N., Monteiro J.P., Vrisekoop N., & Germain R.N. T cell-positive selection uses self-ligand binding strength to optimize repertoire recognition of foreign antigens. Immunity 38, 263-274 (2013).
-
(2013)
Immunity
, vol.38
, pp. 263-274
-
-
Mandl, J.N.1
Monteiro, J.P.2
Vrisekoop, N.3
Germain, R.N.4
-
8
-
-
84894447120
-
Intrinsic CD4+ T cell sensitivity and response to A pathogen are set and sustained by avidity for thymic and peripheral complexes of self peptide and MHC
-
Persaud S.P., Parker C.R., Lo W.L., Weber K.S., & Allen P.M. Intrinsic CD4+ T cell sensitivity and response to A pathogen are set and sustained by avidity for thymic and peripheral complexes of self peptide and MHC. Nat. Immunol. 15, 266-274 (2014).
-
(2014)
Nat. Immunol.
, vol.15
, pp. 266-274
-
-
Persaud, S.P.1
Parker, C.R.2
Lo, W.L.3
Weber, K.S.4
Allen, P.M.5
-
9
-
-
84924979971
-
The TCRs sensitivity to self peptide-MHC dictates the ability of naive CD8+ T cells to respond to foreign antigens
-
Fulton R.B., et al. The TCR's sensitivity to self peptide-MHC dictates the ability of naive CD8+ T cells to respond to foreign antigens. Nat. Immunol. 16, 107-117 (2015).
-
(2015)
Nat. Immunol.
, vol.16
, pp. 107-117
-
-
Fulton, R.B.1
-
10
-
-
84908123494
-
Continuous requirement for the TCR in regulatory T cell function
-
Levine A.G., Arvey A., Jin W., & Rudensky A.Y. Continuous requirement for the TCR in regulatory T cell function. Nat. Immunol. 15, 1070-1078 (2014).
-
(2014)
Nat. Immunol.
, vol.15
, pp. 1070-1078
-
-
Levine, A.G.1
Arvey, A.2
Jin, W.3
Rudensky, A.Y.4
-
11
-
-
84912113033
-
Continuous T cell receptor signals maintain A functional regulatory T cell pool
-
Vahl J.C., et al. Continuous T cell receptor signals maintain A functional regulatory T cell pool. Immunity 41, 722-736 (2014).
-
(2014)
Immunity
, vol.41
, pp. 722-736
-
-
Vahl, J.C.1
-
12
-
-
84884311983
-
Major histocompatibility complex genomics and human disease
-
Trowsdale J., & Knight J.C. Major histocompatibility complex genomics and human disease. Annu. Rev. Genomics Hum. Genet. 14, 301-323 (2013).
-
(2013)
Annu. Rev. Genomics Hum. Genet.
, vol.14
, pp. 301-323
-
-
Trowsdale, J.1
Knight, J.C.2
-
13
-
-
84944879331
-
T cell receptor reversed polarity recognition of A self-Antigen major histocompatibility complex
-
Beringer D.X., et al. T cell receptor reversed polarity recognition of A self-Antigen major histocompatibility complex. Nat. Immunol. 16, 1153-1161 (2015).
-
(2015)
Nat. Immunol.
, vol.16
, pp. 1153-1161
-
-
Beringer, D.X.1
-
14
-
-
84867406318
-
T cells and their eons-old obsession with MHC
-
Yin L., Scott-Browne J., Kappler J.W., Gapin L., & Marrack P. T cells and their eons-old obsession with MHC. Immunol. Rev. 250, 49-60 (2012).
-
(2012)
Immunol. Rev.
, vol.250
, pp. 49-60
-
-
Yin, L.1
Scott-Browne, J.2
Kappler, J.W.3
Gapin, L.4
Marrack, P.5
-
15
-
-
84865281416
-
Reconciling views on T cell receptor germline bias for MHC
-
Garcia K.C. Reconciling views on T cell receptor germline bias for MHC. Trends Immunol. 33, 429-436 (2012).
-
(2012)
Trends Immunol.
, vol.33
, pp. 429-436
-
-
Garcia, K.C.1
-
16
-
-
70449470318
-
Structural alterations in peptide-MHC recognition by self-reactive T cell receptors
-
Wucherpfennig K.W., Call M.J., Deng L., & Mariuzza R. Structural alterations in peptide-MHC recognition by self-reactive T cell receptors. Curr. Opin. Immunol. 21, 590-595 (2009).
-
(2009)
Curr. Opin. Immunol.
, vol.21
, pp. 590-595
-
-
Wucherpfennig, K.W.1
Call, M.J.2
Deng, L.3
Mariuzza, R.4
-
17
-
-
84927661328
-
T cell antigen receptor recognition of antigen-presenting molecules
-
Rossjohn J., et al. T cell antigen receptor recognition of antigen-presenting molecules. Annu. Rev. Immunol. 33, 169-200 (2015).
-
(2015)
Annu. Rev. Immunol.
, vol.33
, pp. 169-200
-
-
Rossjohn, J.1
-
18
-
-
22744441535
-
How the T cell repertoire becomes peptide and MHC specific
-
Huseby E.S., et al. How the T cell repertoire becomes peptide and MHC specific. Cell 122, 247-260 (2005).
-
(2005)
Cell
, vol.122
, pp. 247-260
-
-
Huseby, E.S.1
-
19
-
-
40249118205
-
Crossreactive T Cells spotlight the germline rules for αβ T cell-receptor interactions with MHC molecules
-
Dai S., et al. Crossreactive T Cells spotlight the germline rules for αβ T cell-receptor interactions with MHC molecules. Immunity 28, 324-334 (2008).
-
(2008)
Immunity
, vol.28
, pp. 324-334
-
-
Dai, S.1
-
20
-
-
33750113432
-
Interface-disrupting amino acids establish specificity between T cell receptors and complexes of major histocompatibility complex and peptide
-
Huseby E.S., Crawford F., White J., Marrack P., & Kappler J.W. Interface-disrupting amino acids establish specificity between T cell receptors and complexes of major histocompatibility complex and peptide. Nat. Immunol. 7, 1191-1199 (2006).
-
(2006)
Nat. Immunol.
, vol.7
, pp. 1191-1199
-
-
Huseby, E.S.1
Crawford, F.2
White, J.3
Marrack, P.4
Kappler, J.W.5
-
21
-
-
55949095006
-
How the thymus designs antigen-specific and self-Tolerant T cell receptor sequences
-
Kosmrlj A., Jha A.K., Huseby E.S., Kardar M., & Chakraborty A.K. How the thymus designs antigen-specific and self-Tolerant T cell receptor sequences. Proc. Natl. Acad. Sci. USA 105, 16671-16676 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 16671-16676
-
-
Kosmrlj, A.1
Jha, A.K.2
Huseby, E.S.3
Kardar, M.4
Chakraborty, A.K.5
-
22
-
-
77952742298
-
Effects of thymic selection of the T-cell repertoire on HLA class I-Associated control of HIV infection
-
Kosmrlj A., et al. Effects of thymic selection of the T-cell repertoire on HLA class I-Associated control of HIV infection. Nature 465, 350-354 (2010).
-
(2010)
Nature
, vol.465
, pp. 350-354
-
-
Kosmrlj, A.1
-
23
-
-
79958251745
-
T cell receptor signal strength in Treg and iNKT cell development demonstrated by A novel fluorescent reporter mouse
-
Moran A.E., et al. T cell receptor signal strength in Treg and iNKT cell development demonstrated by A novel fluorescent reporter mouse. J. Exp. Med. 208, 1279-1289 (2011).
-
(2011)
J. Exp. Med.
, vol.208
, pp. 1279-1289
-
-
Moran, A.E.1
-
24
-
-
0029662223
-
An αβ T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex
-
Garcia K.C., et al. An αβ T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex. Science 274, 209-219 (1996).
-
(1996)
Science
, vol.274
, pp. 209-219
-
-
Garcia, K.C.1
-
25
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
White S.H., & Wimley W.C. Membrane protein folding and stability: physical principles. Annu. Rev. Biophys. Biomol. Struct. 28, 319-365 (1999).
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
26
-
-
0037148840
-
BH3-only Bcl-2 family member Bim is required for apoptosis of autoreactive thymocytes
-
Bouillet P., et al. BH3-only Bcl-2 family member Bim is required for apoptosis of autoreactive thymocytes. Nature 415, 922-926 (2002).
-
(2002)
Nature
, vol.415
, pp. 922-926
-
-
Bouillet, P.1
-
27
-
-
0030935007
-
The MHC reactivity of the T cell repertoire prior to positive and negative selection
-
Zerrahn J., Held W., & Raulet D.H. The MHC reactivity of the T cell repertoire prior to positive and negative selection. Cell 88, 627-636 (1997).
-
(1997)
Cell
, vol.88
, pp. 627-636
-
-
Zerrahn, J.1
Held, W.2
Raulet, D.H.3
-
28
-
-
0030846879
-
How many thymocytes audition for selection?
-
Merkenschlager M., et al. How many thymocytes audition for selection?. J. Exp. Med. 186, 1149-1158 (1997).
-
(1997)
J. Exp. Med.
, vol.186
, pp. 1149-1158
-
-
Merkenschlager, M.1
-
29
-
-
0031048826
-
Quantitative impact of thymic clonal deletion on the T cell repertoire
-
van Meerwijk J.P., et al. Quantitative impact of thymic clonal deletion on the T cell repertoire. J. Exp. Med. 185, 377-383 (1997).
-
(1997)
J. Exp. Med.
, vol.185
, pp. 377-383
-
-
Van Meerwijk, J.P.1
-
30
-
-
0001937634
-
The somatic generation of immune recognition
-
Jerne N.K. The somatic generation of immune recognition. Eur. J. Immunol. 1, 1-9 (1971).
-
(1971)
Eur. J. Immunol.
, vol.1
, pp. 1-9
-
-
Jerne, N.K.1
-
31
-
-
0033711639
-
Conversion of A T cell antagonist into an agonist by repairing A defect in the TCR/peptide/MHC interface: Implications for TCR signaling
-
Baker B.M., Gagnon S.J., Biddison W.E., & Wiley D.C. Conversion of A T cell antagonist into an agonist by repairing A defect in the TCR/peptide/MHC interface: implications for TCR signaling. Immunity 13, 475-484 (2000).
-
(2000)
Immunity
, vol.13
, pp. 475-484
-
-
Baker, B.M.1
Gagnon, S.J.2
Biddison, W.E.3
Wiley, D.C.4
-
32
-
-
26944481188
-
Interfaces and the driving force of hydrophobic assembly
-
Chandler D. Interfaces and the driving force of hydrophobic assembly. Nature 437, 640-647 (2005).
-
(2005)
Nature
, vol.437
, pp. 640-647
-
-
Chandler, D.1
-
33
-
-
0032479179
-
Anatomy of hot spots in protein interfaces
-
Bogan A.A., & Thorn K.S. Anatomy of hot spots in protein interfaces. J. Mol. Biol. 280, 1-9 (1998).
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
34
-
-
71749113619
-
T cell receptor CDR3 sequence but not recognition characteristics distinguish autoreactive effector and Foxp3+ regulatory T cells
-
Liu X., et al. T cell receptor CDR3 sequence but not recognition characteristics distinguish autoreactive effector and Foxp3+ regulatory T cells. Immunity 31, 909-920 (2009).
-
(2009)
Immunity
, vol.31
, pp. 909-920
-
-
Liu, X.1
-
36
-
-
0043268726
-
What do TCR-pMHC crystal structures teach us about MHC restriction and alloreactivity?
-
Housset D., & Malissen B. What do TCR-pMHC crystal structures teach us about MHC restriction and alloreactivity?. Trends Immunol. 24, 429-437 (2003).
-
(2003)
Trends Immunol.
, vol.24
, pp. 429-437
-
-
Housset, D.1
Malissen, B.2
-
37
-
-
34548128306
-
Structural evidence for A germline-encoded T cell receptor-major histocompatibility complex interaction codon
-
Feng D., Bond C.J., Ely L.K., Maynard J., & Garcia K.C. Structural evidence for A germline-encoded T cell receptor-major histocompatibility complex interaction codon. Nat. Immunol. 8, 975-983 (2007).
-
(2007)
Nat. Immunol.
, vol.8
, pp. 975-983
-
-
Feng, D.1
Bond, C.J.2
Ely, L.K.3
Maynard, J.4
Garcia, K.C.5
-
38
-
-
67349280397
-
Germline-encoded amino acids in the αβ T-cell receptor control thymic selection
-
Scott-Browne J.P., White J., Kappler J.W., Gapin L., & Marrack P. Germline-encoded amino acids in the αβ T-cell receptor control thymic selection. Nature 458, 1043-1046 (2009).
-
(2009)
Nature
, vol.458
, pp. 1043-1046
-
-
Scott-Browne, J.P.1
White, J.2
Kappler, J.W.3
Gapin, L.4
Marrack, P.5
-
39
-
-
81955161800
-
A role for differential variable gene pairing in creating T cell receptors specific for unique major histocompatibility ligands
-
Stadinski B.D., et al. A role for differential variable gene pairing in creating T cell receptors specific for unique major histocompatibility ligands. Immunity 35, 694-704 (2011).
-
(2011)
Immunity
, vol.35
, pp. 694-704
-
-
Stadinski, B.D.1
-
40
-
-
0032539536
-
Autoreactivity of T cells from nonobese diabetic mice: An I-Ag7-dependent reaction
-
Kanagawa O., Martin S.M., Vaupel B.A., Carrasco-Marin E., & Unanue E.R. Autoreactivity of T cells from nonobese diabetic mice: an I-Ag7-dependent reaction. Proc. Natl. Acad. Sci. USA 95, 1721-1724 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1721-1724
-
-
Kanagawa, O.1
Martin, S.M.2
Vaupel, B.A.3
Carrasco-Marin, E.4
Unanue, E.R.5
-
41
-
-
0032433125
-
Analysis of the role of variation of major histocompatibility complex class II expression on nonobese diabetic (NOD) peripheral T cell response
-
Ridgway W.M., Ito H., Fassò M., Yu C., & Fathman C.G. Analysis of the role of variation of major histocompatibility complex class II expression on nonobese diabetic (NOD) peripheral T cell response. J. Exp. Med. 188, 2267-2275 (1998).
-
(1998)
J. Exp. Med.
, vol.188
, pp. 2267-2275
-
-
Ridgway, W.M.1
Ito, H.2
Fassò, M.3
Yu, C.4
Fathman, C.G.5
-
42
-
-
0035175577
-
A defect in central tolerance in NOD mice
-
Kishimoto H., & Sprent J. A defect in central tolerance in NOD mice. Nat. Immunol. 2, 1025-1031 (2001).
-
(2001)
Nat. Immunol.
, vol.2
, pp. 1025-1031
-
-
Kishimoto, H.1
Sprent, J.2
-
43
-
-
10344231974
-
Generalized resistance to thymic deletion in the NOD mouse; A polygenic trait characterized by defective induction of Bim
-
Liston A., et al. Generalized resistance to thymic deletion in the NOD mouse; A polygenic trait characterized by defective induction of Bim. Immunity 21, 817-830 (2004).
-
(2004)
Immunity
, vol.21
, pp. 817-830
-
-
Liston, A.1
-
44
-
-
84860387854
-
Thymic negative selection is functional in NOD mice
-
Mingueneau M., Jiang W., Feuerer M., Mathis D., & Benoist C. Thymic negative selection is functional in NOD mice. J. Exp. Med. 209, 623-637 (2012).
-
(2012)
J. Exp. Med.
, vol.209
, pp. 623-637
-
-
Mingueneau, M.1
Jiang, W.2
Feuerer, M.3
Mathis, D.4
Benoist, C.5
-
45
-
-
39149118342
-
Do the peptide-binding properties of diabetogenic class II molecules explain autoreactivity?
-
Suri A., Levisetti M.G., & Unanue E.R. Do the peptide-binding properties of diabetogenic class II molecules explain autoreactivity?. Curr. Opin. Immunol. 20, 105-110 (2008).
-
(2008)
Curr. Opin. Immunol.
, vol.20
, pp. 105-110
-
-
Suri, A.1
Levisetti, M.G.2
Unanue, E.R.3
-
46
-
-
0025775862
-
Islet-specific T-cell clones from nonobese diabetic mice express heterogeneous T-cell receptors
-
Candéias S., Katz J., Benoist C., Mathis D., & Haskins K. Islet-specific T-cell clones from nonobese diabetic mice express heterogeneous T-cell receptors. Proc. Natl. Acad. Sci. USA 88, 6167-6170 (1991).
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 6167-6170
-
-
Candéias, S.1
Katz, J.2
Benoist, C.3
Mathis, D.4
Haskins, K.5
-
47
-
-
70349745490
-
T cell islet accumulation in type 1 diabetes is A tightly regulated, cell-Autonomous event
-
Lennon G.P., et al. T cell islet accumulation in type 1 diabetes is A tightly regulated, cell-Autonomous event. Immunity 31, 643-653 (2009).
-
(2009)
Immunity
, vol.31
, pp. 643-653
-
-
Lennon, G.P.1
-
48
-
-
77951926420
-
Etiology of type 1 diabetes
-
Todd J.A. Etiology of type 1 diabetes. Immunity 32, 457-467 (2010).
-
(2010)
Immunity
, vol.32
, pp. 457-467
-
-
Todd, J.A.1
-
50
-
-
79959353928
-
Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses
-
Day E.B., et al. Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses. Proc. Natl. Acad. Sci. USA 108, 9536-9541 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 9536-9541
-
-
Day, E.B.1
-
51
-
-
84871990243
-
Viral antigen density and confinement time regulate the reactivity pattern of CD4 T-cell responses to vaccinia virus infection
-
Vanguri V., Govern C.C., Smith R., & Huseby E.S. Viral antigen density and confinement time regulate the reactivity pattern of CD4 T-cell responses to vaccinia virus infection. Proc. Natl. Acad. Sci. USA 110, 288-293 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 288-293
-
-
Vanguri, V.1
Govern, C.C.2
Smith, R.3
Huseby, E.S.4
-
53
-
-
84919628793
-
TCRklass: A new K-string-based algorithm for human and mouse TCR repertoire characterization
-
Yang X., et al. TCRklass: A new K-string-based algorithm for human and mouse TCR repertoire characterization. J. Immunol. 194, 446-454 (2015).
-
(2015)
J. Immunol.
, vol.194
, pp. 446-454
-
-
Yang, X.1
-
55
-
-
0012457557
-
Distributions of the ratios of independent beta variables and applications
-
Pham-Gia T. Distributions of the ratios of independent beta variables and applications. Commun. Stat. Theory Methods 29, 2693-2715 (2000).
-
(2000)
Commun. Stat. Theory Methods
, vol.29
, pp. 2693-2715
-
-
Pham-Gia, T.1
|