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Volumn 2, Issue 1, 2016, Pages

Conditional iron and pH-dependent activity of a non-enzymatic glycolysis and pentose phosphate pathway

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINITY; BINDING ENERGY; CARBON; MAGNETIC RESONANCE SPECTROSCOPY; METABOLISM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PATHOLOGY; PH; PHOSPHATES; PHYSIOLOGY; REACTION RATES; SEDIMENTS; SUGARS; TOPOLOGY; TRANSITION METALS;

EID: 84975472063     PISSN: None     EISSN: 23752548     Source Type: Journal    
DOI: 10.1126/sciadv.1501235     Document Type: Article
Times cited : (62)

References (69)
  • 2
    • 84867856341 scopus 로고    scopus 로고
    • Prebiotic synthesis of simple sugars by photoredox systems chemistry
    • D. Ritson, J. D. Sutherland, Prebiotic synthesis of simple sugars by photoredox systems chemistry. Nat. Chem. 4, 895-899 (2012).
    • (2012) Nat. Chem. , vol.4 , pp. 895-899
    • Ritson, D.1    Sutherland, J.D.2
  • 3
    • 33750443637 scopus 로고    scopus 로고
    • A-Hydroxy and a-amino acids under possible Hadean. Volcanic origin-of-life conditions
    • C. Huber, G. Wächtershäuser, a-Hydroxy and a-amino acids under possible Hadean, volcanic origin-of-life conditions. Science 314, 630-632 (2006).
    • (2006) Science , vol.314 , pp. 630-632
    • Huber, C.1    Wächtershäuser, G.2
  • 4
    • 84925756349 scopus 로고    scopus 로고
    • Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism
    • B. H. Patel, C. Percivalle, D. J. Ritson, C. D. Duffy, J. D. Sutherland, Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism. Nat. Chem. 7, 301-307 (2015).
    • (2015) Nat. Chem. , vol.7 , pp. 301-307
    • Patel, B.H.1    Percivalle, C.2    Ritson, D.J.3    Duffy, C.D.4    Sutherland, J.D.5
  • 5
    • 66149108671 scopus 로고    scopus 로고
    • Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions
    • M. W. Powner, B. Gerland, J. D. Sutherland, Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions. Nature 459, 239-242 (2009).
    • (2009) Nature , vol.459 , pp. 239-242
    • Powner, M.W.1    Gerland, B.2    Sutherland, J.D.3
  • 7
    • 35148861695 scopus 로고    scopus 로고
    • On the origin of biochemistry at an alkaline hydrothermal vent
    • W. Martin, M. J. Russell, On the origin of biochemistry at an alkaline hydrothermal vent. Philos. Trans. R. Soc. Lond. B Biol. Sci. 362, 1887-1925 (2007).
    • (2007) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.362 , pp. 1887-1925
    • Martin, W.1    Russell, M.J.2
  • 8
    • 84871587989 scopus 로고    scopus 로고
    • The origin of membrane bioenergetics
    • N. Lane, W. F. Martin, The origin of membrane bioenergetics. Cell 151, 1406-1416 (2012).
    • (2012) Cell , vol.151 , pp. 1406-1416
    • Lane, N.1    Martin, W.F.2
  • 9
    • 0001260894 scopus 로고
    • On the evolution of biochemical syntheses
    • N. H. Horowitz, On the evolution of biochemical syntheses. Proc. Natl. Acad. Sci. U.S.A. 31, 153-157 (1945).
    • (1945) Proc. Natl. Acad. Sci. U.S.A. , vol.31 , pp. 153-157
    • Horowitz, N.H.1
  • 10
    • 0016612552 scopus 로고
    • Speculations on the origin and evolution of metabolism
    • H. Hartman, Speculations on the origin and evolution of metabolism. J. Mol. Evol. 4, 359-370 (1975).
    • (1975) J. Mol. Evol. , vol.4 , pp. 359-370
    • Hartman, H.1
  • 11
  • 12
    • 34249676391 scopus 로고    scopus 로고
    • Chemistry and selection
    • C. de Duve, Chemistry and selection. Chem. Biodivers. 4, 574-583 (2007).
    • (2007) Chem. Biodivers. , vol.4 , pp. 574-583
    • De Duve, C.1
  • 13
    • 84905842283 scopus 로고    scopus 로고
    • The RNA world and the origin of metabolic enzymes
    • M. Ralser, The RNA world and the origin of metabolic enzymes. Biochem. Soc. Trans. 42, 985-988 (2014).
    • (2014) Biochem. Soc. Trans. , vol.42 , pp. 985-988
    • Ralser, M.1
  • 15
    • 0024254814 scopus 로고
    • Before enzymes and templates: Theory of surface metabolism
    • G. Wächtershäuser, Before enzymes and templates: Theory of surface metabolism. Microbiol. Rev. 52, 452-484 (1988).
    • (1988) Microbiol. Rev. , vol.52 , pp. 452-484
    • Wächtershäuser, G.1
  • 17
    • 3042709433 scopus 로고    scopus 로고
    • Prebiotic chemistry and the origin of the RNA world
    • L. E. Orgel, Prebiotic chemistry and the origin of the RNA world. Crit. Rev. Biochem. Mol. Biol. 39, 99-123 (2004).
    • (2004) Crit. Rev. Biochem. Mol. Biol. , vol.39 , pp. 99-123
    • Orgel, L.E.1
  • 19
    • 84899564808 scopus 로고    scopus 로고
    • Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean
    • M. A. Keller, A. V. Turchyn, M. Ralser, Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean. Mol. Syst. Biol. 10, 725 (2014).
    • (2014) Mol. Syst. Biol. , vol.10 , pp. 725
    • Keller, M.A.1    Turchyn, A.V.2    Ralser, M.3
  • 20
    • 79958097953 scopus 로고    scopus 로고
    • The moderately efficient enzyme: Evolutionary and physicochemical trends shaping enzyme parameters
    • A. Bar-Even, E. Noor, Y. Savir, W. Liebermeister, D. Davidi, D. S. Tawfik, R.Milo, The moderately efficient enzyme: Evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry 50, 4402-4410 (2011).
    • (2011) Biochemistry , vol.50 , pp. 4402-4410
    • Bar-Even, A.1    Noor, E.2    Savir, Y.3    Liebermeister, W.4    Davidi, D.5    Tawfik, D.S.6    Milo, R.7
  • 21
    • 84864182355 scopus 로고    scopus 로고
    • Out of fuzzy chemistry: From prebiotic chemistry to metabolic networks
    • J. Peretó, Out of fuzzy chemistry: From prebiotic chemistry to metabolic networks. Chem. Soc. Rev. 41, 5394-5403 (2012).
    • (2012) Chem. Soc. Rev. , vol.41 , pp. 5394-5403
    • Peretó, J.1
  • 23
    • 0036190131 scopus 로고    scopus 로고
    • Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer
    • C. Schnarrenberger, W. Martin, Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer. Eur. J. Biochem. 269, 868-883 (2002).
    • (2002) Eur. J. Biochem. , vol.269 , pp. 868-883
    • Schnarrenberger, C.1    Martin, W.2
  • 25
    • 0034724862 scopus 로고    scopus 로고
    • The Archean sulfur cycle and the early history of atmospheric oxygen
    • D. E. Canfield, The Archean sulfur cycle and the early history of atmospheric oxygen. Science 288, 658-661 (2000).
    • (2000) Science , vol.288 , pp. 658-661
    • Canfield, D.E.1
  • 26
    • 13844310799 scopus 로고    scopus 로고
    • Iron isotope constraints on the Archean and Paleoproterozoic ocean redox state
    • O. J. Rouxel, A. Bekker, K. J. Edwards, Iron isotope constraints on the Archean and Paleoproterozoic ocean redox state. Science 307, 1088-1091 (2005).
    • (2005) Science , vol.307 , pp. 1088-1091
    • Rouxel, O.J.1    Bekker, A.2    Edwards, K.J.3
  • 28
    • 36149008265 scopus 로고
    • Relaxation processes in a system of two spins
    • I. Solomon, Relaxation processes in a system of two spins. Phys. Rev. 99, 559-565 (1955).
    • (1955) Phys. Rev. , vol.99 , pp. 559-565
    • Solomon, I.1
  • 29
    • 33745930076 scopus 로고
    • Relaxation effects in nuclear magnetic resonance absorption
    • N. Bloembergen, E. M. Purcell, R. V. Pound, Relaxation effects in nuclear magnetic resonance absorption. Phys. Rev. 73, 679-712 (1948).
    • (1948) Phys. Rev. , vol.73 , pp. 679-712
    • Bloembergen, N.1    Purcell, E.M.2    Pound, R.V.3
  • 32
    • 0029668170 scopus 로고    scopus 로고
    • Redox stabilization of the atmosphere and oceans by phosphorus-limited marine productivity
    • P. Van Cappellen, E. D. Ingall, Redox stabilization of the atmosphere and oceans by phosphorus-limited marine productivity. Science 271, 493-496 (1996).
    • (1996) Science , vol.271 , pp. 493-496
    • Van Cappellen, P.1    Ingall, E.D.2
  • 33
    • 33845377739 scopus 로고
    • Anomerization of furanose sugars and sugar phosphates
    • J. Pierce, A. S. Serianni, R. Barker, Anomerization of furanose sugars and sugar phosphates. J. Am. Chem. Soc. 107, 2448-2456 (1985).
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 2448-2456
    • Pierce, J.1    Serianni, A.S.2    Barker, R.3
  • 34
    • 46949086679 scopus 로고    scopus 로고
    • How can a chemical system act purposefully? Bridging between life and non-life
    • A. Pross, How can a chemical system act purposefully? Bridging between life and non-life. J. Phys. Org. Chem. 21, 724-730 (2008).
    • (2008) J. Phys. Org. Chem. , vol.21 , pp. 724-730
    • Pross, A.1
  • 35
    • 84255198819 scopus 로고    scopus 로고
    • Etiology of potentially primordial biomolecular structures: From vitamin B12 to the nucleic acids and an inquiry into the chemistry of life's origin: A retrospective
    • A. Eschenmoser, Etiology of potentially primordial biomolecular structures: From vitamin B12 to the nucleic acids and an inquiry into the chemistry of life's origin: A retrospective. Angew. Chem. Int. Ed. Engl. 50, 12412-12472 (2011).
    • (2011) Angew. Chem. Int. Ed. Engl. , vol.50 , pp. 12412-12472
    • Eschenmoser, A.1
  • 37
    • 0029645292 scopus 로고
    • Enzyme nomenclature. Recommendations 1992. Supplement 2: Corrections and additions (1994)
    • Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB)
    • A. J. Barrett; Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB), Enzyme nomenclature. Recommendations 1992. Supplement 2: Corrections and additions (1994). Eur. J. Biochem. 232, 1-6 (1995).
    • (1995) Eur. J. Biochem. , vol.232 , pp. 1-6
    • Barrett, A.J.1
  • 38
    • 84921468648 scopus 로고    scopus 로고
    • The widespread role of non-enzymatic reactions in cellular metabolism
    • M. A. Keller, G. Piedrafita, M. Ralser, The widespread role of non-enzymatic reactions in cellular metabolism. Curr. Opin. Biotechnol. 34, 153-161 (2015).
    • (2015) Curr. Opin. Biotechnol. , vol.34 , pp. 153-161
    • Keller, M.A.1    Piedrafita, G.2    Ralser, M.3
  • 39
    • 0032829506 scopus 로고    scopus 로고
    • On the origin of metabolic pathways
    • A. Lazcano, S. L. Miller, On the origin of metabolic pathways. J. Mol. Evol. 49, 424-431 (1999).
    • (1999) J. Mol. Evol. , vol.49 , pp. 424-431
    • Lazcano, A.1    Miller, S.L.2
  • 42
    • 36248967733 scopus 로고    scopus 로고
    • The search for the chemistry of life's origin
    • A. Eschenmoser, The search for the chemistry of life's origin. Tetrahedron 63, 12821-12844 (2007).
    • (2007) Tetrahedron , vol.63 , pp. 12821-12844
    • Eschenmoser, A.1
  • 43
    • 0031880803 scopus 로고    scopus 로고
    • Solubility of Fe(III) in seawater
    • F. J. Millero, Solubility of Fe(III) in seawater. Earth Planet. Sci. Lett. 154, 323-329 (1998).
    • (1998) Earth Planet. Sci. Lett. , vol.154 , pp. 323-329
    • Millero, F.J.1
  • 44
    • 57349112982 scopus 로고    scopus 로고
    • Oceans. Elements and evolution
    • A. D. Anbar, Oceans. Elements and evolution. Science 322, 1481-1483 (2008).
    • (2008) Science , vol.322 , pp. 1481-1483
    • Anbar, A.D.1
  • 46
    • 0011509370 scopus 로고    scopus 로고
    • Structural and functional aspects of metal sites in biology
    • R. H. Holm, P. Kennepohl, E. I. Solomon, Structural and functional aspects of metal sites in biology. Chem. Rev. 96, 2239-2314 (1996).
    • (1996) Chem. Rev. , vol.96 , pp. 2239-2314
    • Holm, R.H.1    Kennepohl, P.2    Solomon, E.I.3
  • 47
    • 79953896180 scopus 로고    scopus 로고
    • Iron enzyme ribulose-5-phosphate 3-epimerase in Escherichia coli is rapidly damaged by hydrogen peroxide but can be protected by manganese
    • J. M. Sobota, J. A. Imlay, Iron enzyme ribulose-5-phosphate 3-epimerase in Escherichia coli is rapidly damaged by hydrogen peroxide but can be protected by manganese. Proc. Natl. Acad. Sci. U.S.A. 108, 5402-5407 (2011).
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 5402-5407
    • Sobota, J.M.1    Imlay, J.A.2
  • 48
    • 0034107765 scopus 로고    scopus 로고
    • Iron and citric acid: A fuzzy chemistry of ubiquitous biological relevance
    • J. L. Pierre, I. Gautier-Luneau, Iron and citric acid: A fuzzy chemistry of ubiquitous biological relevance. Biometals 13, 91-96 (2000).
    • (2000) Biometals , vol.13 , pp. 91-96
    • Pierre, J.L.1    Gautier-Luneau, I.2
  • 49
    • 0035052146 scopus 로고    scopus 로고
    • Carbon dioxide cycling and implications for climate on ancient Earth
    • N. H. Sleep, K. Zahnle, Carbon dioxide cycling and implications for climate on ancient Earth. J. Geophys. Res. 106, 1373-1399 (2001).
    • (2001) J. Geophys. Res. , vol.106 , pp. 1373-1399
    • Sleep, N.H.1    Zahnle, K.2
  • 50
    • 0001732463 scopus 로고
    • Iron-catalyzed oxidative decarboxylation of benzoylformic acid
    • B. Siegel, J. Lanphear, Iron-catalyzed oxidative decarboxylation of benzoylformic acid. J. Am. Chem. Soc. 101, 2221-2222 (1979).
    • (1979) J. Am. Chem. Soc. , vol.101 , pp. 2221-2222
    • Siegel, B.1    Lanphear, J.2
  • 51
    • 0027817195 scopus 로고
    • Mechanism of enzymatic and nonenzymatic prolyl cis-trans isomerization
    • R. L. Stein, Mechanism of enzymatic and nonenzymatic prolyl cis-trans isomerization. Adv. Protein Chem. 44, 1-24 (1993).
    • (1993) Adv. Protein Chem. , vol.44 , pp. 1-24
    • Stein, R.L.1
  • 52
    • 55349085086 scopus 로고    scopus 로고
    • Interactions of D-ribose with polyatomic anions, and alkaline and alkaline-earth cations: Possible clues to environmental synthesis conditions in the pre-RNA world
    • A. F. Amaral, M. M. Marques, J. A. L. da Silva, J. J. R. Fraústo da Silva, Interactions of D-ribose with polyatomic anions, and alkaline and alkaline-earth cations: Possible clues to environmental synthesis conditions in the pre-RNA world. New J. Chem. 32, 2043-2049 (2008).
    • (2008) New J. Chem. , vol.32 , pp. 2043-2049
    • Amaral, A.F.1    Marques, M.M.2    Da Silva, J.A.L.3    Fraústo Da Silva, J.J.R.4
  • 54
    • 0035984275 scopus 로고    scopus 로고
    • Mechanistic aspects of enzymatic carbohydrate epimerization
    • J. Samuel, M. E. Tanner, Mechanistic aspects of enzymatic carbohydrate epimerization. Nat. Prod. Rep. 19, 261-277 (2002).
    • (2002) Nat. Prod. Rep. , vol.19 , pp. 261-277
    • Samuel, J.1    Tanner, M.E.2
  • 55
    • 15444365482 scopus 로고    scopus 로고
    • Intracellular pH distribution in Saccharomyces cerevisiae cell populations, analyzed by flow cytometry
    • M. Valli, M. Sauer, P. Branduardi, N. Borth, D. Porro, D. Mattanovich,Intracellular pH distribution in Saccharomyces cerevisiae cell populations, analyzed by flow cytometry. Appl. Environ. Microbiol. 71, 1515-1521 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1515-1521
    • Valli, M.1    Sauer, M.2    Branduardi, P.3    Borth, N.4    Porro, D.5    Mattanovich, D.6
  • 56
    • 0029131592 scopus 로고
    • Distribution of individual cytoplasmic pH values in a population of the yeast Saccharomyces cerevisiae
    • P. Cimprich, J. Slavík, A. Kotyk, Distribution of individual cytoplasmic pH values in a population of the yeast Saccharomyces cerevisiae. FEMS Microbiol. Lett. 130, 245-251 (1995).
    • (1995) FEMS Microbiol. Lett. , vol.130 , pp. 245-251
    • Cimprich, P.1    Slavík, J.2    Kotyk, A.3
  • 58
    • 0035021853 scopus 로고    scopus 로고
    • Metabolic regulation of pH in plant cells: Role of cytoplasmic pH in defense reaction and secondary metabolism
    • K. Sakano, Metabolic regulation of pH in plant cells: Role of cytoplasmic pH in defense reaction and secondary metabolism. Int. Rev. Cytol. 206, 1-44 (2001).
    • (2001) Int. Rev. Cytol. , vol.206 , pp. 1-44
    • Sakano, K.1
  • 61
    • 0028184159 scopus 로고
    • Hydrothermal and oceanic pH conditions of possible relevance to the origin of life
    • G. MacLeod, C. McKeown, A. J. Hall, M. J. Russell, Hydrothermal and oceanic pH conditions of possible relevance to the origin of life. Orig. Life Evol. Biosph. 24, 19-41 (1994).
    • (1994) Orig. Life Evol. Biosph. , vol.24 , pp. 19-41
    • MacLeod, G.1    McKeown, C.2    Hall, A.J.3    Russell, M.J.4
  • 62
    • 0030875872 scopus 로고    scopus 로고
    • The emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front
    • M. J. Russell, A. J. Hall, The emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front. J. Geol. Soc. London. 154, 377-402 (1997).
    • (1997) J. Geol. Soc. London. , vol.154 , pp. 377-402
    • Russell, M.J.1    Hall, A.J.2
  • 63
    • 84914680694 scopus 로고    scopus 로고
    • A bioenergetic basis for membrane divergence in Archaea and bacteria
    • V. Sojo, A. Pomiankowski, N. Lane, A bioenergetic basis for membrane divergence in Archaea and bacteria. PLOS Biol. 12, e1001926 (2014).
    • (2014) PLOS Biol. , vol.12 , pp. e1001926
    • Sojo, V.1    Pomiankowski, A.2    Lane, N.3
  • 64
    • 33847670407 scopus 로고
    • Ferrozine-A new spectrophotometric reagent for iron
    • L. L. Stookey, Ferrozine-A new spectrophotometric reagent for iron. Anal. Chem. 42, 779-781 (1970).
    • (1970) Anal. Chem. , vol.42 , pp. 779-781
    • Stookey, L.L.1
  • 65
    • 33846318571 scopus 로고    scopus 로고
    • Ribose 5-phosphate isomerase type B from Trypanosoma cruzi: Kinetic properties and site-directed mutagenesis reveal information about the reaction mechanism
    • A. L. Stern, E. Burgos, L. Salmon, J. J. Cazzulo, Ribose 5-phosphate isomerase type B from Trypanosoma cruzi: Kinetic properties and site-directed mutagenesis reveal information about the reaction mechanism. Biochem. J. 401, 279-285 (2007).
    • (2007) Biochem. J. , vol.401 , pp. 279-285
    • Stern, A.L.1    Burgos, E.2    Salmon, L.3    Cazzulo, J.J.4
  • 66
    • 79952574439 scopus 로고    scopus 로고
    • Substrate specificity of a recombinant ribose-5-phosphate isomerase from Streptococcus pneumoniae and its application in the production of L-lyxose and L-tagatose
    • C.-S. Park, S.-J. Yeom, Y.-R. Lim, Y.-S. Kim, D.-K. Oh, Substrate specificity of a recombinant ribose-5-phosphate isomerase from Streptococcus pneumoniae and its application in the production of L-lyxose and L-tagatose. World J. Microbiol. Biotechnol. 27, 743-750 (2010).
    • (2010) World J. Microbiol. Biotechnol. , vol.27 , pp. 743-750
    • Park, C.-S.1    Yeom, S.-J.2    Lim, Y.-R.3    Kim, Y.-S.4    Oh, D.-K.5
  • 67
    • 79952573197 scopus 로고    scopus 로고
    • Increased D-allose production by the R132E mutant of ribose-5-phosphate isomerase from Clostridium thermocellum
    • S.-J. Yeom, E.-S. Seo, Y.-S. Kim, D.-K. Oh, Increased D-allose production by the R132E mutant of ribose-5-phosphate isomerase from Clostridium thermocellum. Appl. Microbiol. Biotechnol. 89, 1859-1866 (2011).
    • (2011) Appl. Microbiol. Biotechnol. , vol.89 , pp. 1859-1866
    • Yeom, S.-J.1    Seo, E.-S.2    Kim, Y.-S.3    Oh, D.-K.4
  • 69
    • 0015807602 scopus 로고
    • Purification and properties of ribose-phosphate isomerase from Candida utilis
    • G. F. Domagk, K. M. Doering, R. Chilla, Purification and properties of ribose-phosphate isomerase from Candida utilis. Eur. J. Biochem. 38, 259-264 (1973).
    • (1973) Eur. J. Biochem. , vol.38 , pp. 259-264
    • Domagk, G.F.1    Doering, K.M.2    Chilla, R.3


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