-
1
-
-
82255181690
-
Applications of next-generation sequencing technologies to diagnostic virology
-
L. Barzon, E. Lavezzo, V. Militello, S. Toppo, and G. Palù Applications of next-generation sequencing technologies to diagnostic virology Int. J. Mol. Sci. 12 2011 7861 7884
-
(2011)
Int. J. Mol. Sci.
, vol.12
, pp. 7861-7884
-
-
Barzon, L.1
Lavezzo, E.2
Militello, V.3
Toppo, S.4
Palù, G.5
-
2
-
-
84863996209
-
Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice
-
D. Bottomly, M.T. Ferris, L.D. Aicher, E. Rosenzweig, A. Whitmore, D.L. Aylor, B.L. Haagmans, L.E. Gralinski, B.G. Bradel-Tretheway, J.T. Bryan, and et al. Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice G3 (Bethesda) 2 2012 213 221
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 213-221
-
-
Bottomly, D.1
Ferris, M.T.2
Aicher, L.D.3
Rosenzweig, E.4
Whitmore, A.5
Aylor, D.L.6
Haagmans, B.L.7
Gralinski, L.E.8
Bradel-Tretheway, B.G.9
Bryan, J.T.10
-
3
-
-
84946601295
-
Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis
-
e01491-e15
-
T. Briese, A. Kapoor, N. Mishra, K. Jain, A. Kumar, O.J. Jabado, and W.I. Lipkin Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis MBio 6 2015 e01491-e15
-
(2015)
MBio
, vol.6
-
-
Briese, T.1
Kapoor, A.2
Mishra, N.3
Jain, K.4
Kumar, A.5
Jabado, O.J.6
Lipkin, W.I.7
-
4
-
-
0030744352
-
Detection of enteroviral RNA and specific DNA of herpesviruses by multiplex genome amplification
-
I. Casas, A. Tenorio, J.M. Echevarría, P.E. Klapper, and G.M. Cleator Detection of enteroviral RNA and specific DNA of herpesviruses by multiplex genome amplification J. Virol. Methods 66 1997 39 50
-
(1997)
J. Virol. Methods
, vol.66
, pp. 39-50
-
-
Casas, I.1
Tenorio, A.2
Echevarría, J.M.3
Klapper, P.E.4
Cleator, G.M.5
-
5
-
-
84969559736
-
Evidence of Sexual Transmission of Zika Virus
-
Published online April 13, 2016
-
E. D'Ortenzio, S. Matheron, X. de Lamballerie, B. Hubert, G. Piorkowski, M. Maquart, D. Descamps, F. Damond, Y. Yazdanpanah, and I. Leparc-Goffart Evidence of Sexual Transmission of Zika Virus N. Engl. J. Med. 2016 10.1056/NEJMc1604449 Published online April 13, 2016
-
(2016)
N. Engl. J. Med.
-
-
D'Ortenzio, E.1
Matheron, S.2
De Lamballerie, X.3
Hubert, B.4
Piorkowski, G.5
Maquart, M.6
Descamps, D.7
Damond, F.8
Yazdanpanah, Y.9
Leparc-Goffart, I.10
-
6
-
-
84938076063
-
Genomic and transcriptome profiling identified both human and HBV genetic variations and their interactions in Chinese hepatocellular carcinoma
-
H. Dong, Z. Qian, L. Zhang, Y. Chen, Z. Ren, and Q. Ji Genomic and transcriptome profiling identified both human and HBV genetic variations and their interactions in Chinese hepatocellular carcinoma Genom. Data 6 2015 1 3
-
(2015)
Genom. Data
, vol.6
, pp. 1-3
-
-
Dong, H.1
Qian, Z.2
Zhang, L.3
Chen, Y.4
Ren, Z.5
Ji, Q.6
-
7
-
-
84971228099
-
Zika Virus Infection with Prolonged Maternal Viremia and Fetal Brain Abnormalities
-
Published online March 30, 2016
-
R.W. Driggers, C.Y. Ho, E.M. Korhonen, S. Kuivanen, A.J. Jääskeläinen, T. Smura, A. Rosenberg, D.A. Hill, R.L. DeBiasi, G. Vezina, and et al. Zika Virus Infection with Prolonged Maternal Viremia and Fetal Brain Abnormalities N. Engl. J. Med. 2016 10.1056/NEJMoa1601824 Published online March 30, 2016
-
(2016)
N. Engl. J. Med.
-
-
Driggers, R.W.1
Ho, C.Y.2
Korhonen, E.M.3
Kuivanen, S.4
Jääskeläinen, A.J.5
Smura, T.6
Rosenberg, A.7
Hill, D.A.8
DeBiasi, R.L.9
Vezina, G.10
-
8
-
-
0036308447
-
Rapid detection and quantification of RNA of Ebola and Marburg viruses, Lassa virus, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus, dengue virus, and yellow fever virus by real-time reverse transcription-PCR
-
C. Drosten, S. Göttig, S. Schilling, M. Asper, M. Panning, H. Schmitz, and S. Günther Rapid detection and quantification of RNA of Ebola and Marburg viruses, Lassa virus, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus, dengue virus, and yellow fever virus by real-time reverse transcription-PCR J. Clin. Microbiol. 40 2002 2323 2330
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 2323-2330
-
-
Drosten, C.1
Göttig, S.2
Schilling, S.3
Asper, M.4
Panning, M.5
Schmitz, H.6
Günther, S.7
-
9
-
-
84905974899
-
Review of the laboratory approaches to the detection of antibody and cell-mediated immunity to pertussis disease and vaccine
-
K.M. Edwards Review of the laboratory approaches to the detection of antibody and cell-mediated immunity to pertussis disease and vaccine Expert Rev. Vaccines 13 2014 1183 1190
-
(2014)
Expert Rev. Vaccines
, vol.13
, pp. 1183-1190
-
-
Edwards, K.M.1
-
10
-
-
84957899695
-
Retrotransposons as regulators of gene expression
-
R.A. Elbarbary, B.A. Lucas, and L.E. Maquat Retrotransposons as regulators of gene expression Science 351 2016 aac7247
-
(2016)
Science
, vol.351
, pp. aac7247
-
-
Elbarbary, R.A.1
Lucas, B.A.2
Maquat, L.E.3
-
11
-
-
1842434337
-
Molecular Koch's postulates applied to bacterial pathogenicity - A personal recollection 15 years later
-
S. Falkow Molecular Koch's postulates applied to bacterial pathogenicity - a personal recollection 15 years later Nat. Rev. Microbiol. 2 2004 67 72
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 67-72
-
-
Falkow, S.1
-
12
-
-
84961653991
-
Zika virus in the Americas: Early epidemiological and genetic findings
-
N.R. Faria, Rdo.S. Azevedo, M.U. Kraemer, R. Souza, M.S. Cunha, S.C. Hill, J. Thézé, M.B. Bonsall, T.A. Bowden, I. Rissanen, and et al. Zika virus in the Americas: Early epidemiological and genetic findings Science 352 2016 345 349
-
(2016)
Science
, vol.352
, pp. 345-349
-
-
Faria, N.R.1
Azevedo, R.S.2
Kraemer, M.U.3
Souza, R.4
Cunha, M.S.5
Hill, S.C.6
Thézé, J.7
Bonsall, M.B.8
Bowden, T.A.9
Rissanen, I.10
-
13
-
-
84880944577
-
Modeling host genetic regulation of influenza pathogenesis in the collaborative cross
-
M.T. Ferris, D.L. Aylor, D. Bottomly, A.C. Whitmore, L.D. Aicher, T.A. Bell, B. Bradel-Tretheway, J.T. Bryan, R.J. Buus, L.E. Gralinski, and et al. Modeling host genetic regulation of influenza pathogenesis in the collaborative cross PLoS Pathog. 9 2013 e1003196
-
(2013)
PLoS Pathog.
, vol.9
, pp. e1003196
-
-
Ferris, M.T.1
Aylor, D.L.2
Bottomly, D.3
Whitmore, A.C.4
Aicher, L.D.5
Bell, T.A.6
Bradel-Tretheway, B.7
Bryan, J.T.8
Buus, R.J.9
Gralinski, L.E.10
-
14
-
-
0030060689
-
Sequence-based identification of microbial pathogens: A reconsideration of Koch's postulates
-
D.N. Fredricks, and D.A. Relman Sequence-based identification of microbial pathogens: a reconsideration of Koch's postulates Clin. Microbiol. Rev. 9 1996 18 33
-
(1996)
Clin. Microbiol. Rev.
, vol.9
, pp. 18-33
-
-
Fredricks, D.N.1
Relman, D.A.2
-
15
-
-
84962798328
-
Zika virus impairs growth in human neurospheres and brain organoids
-
Published online April 10, 2016
-
P.P. Garcez, E.C. Loiola, R. Madeiro da Costa, L.M. Higa, P. Trindade, R. Delvecchio, J.M. Nascimento, R. Brindeiro, A. Tanuri, and S.K. Rehen Zika virus impairs growth in human neurospheres and brain organoids Science 2016 10.1126/science.aaf6116 Published online April 10, 2016
-
(2016)
Science
-
-
Garcez, P.P.1
Loiola, E.C.2
Madeiro Da Costa, R.3
Higa, L.M.4
Trindade, P.5
Delvecchio, R.6
Nascimento, J.M.7
Brindeiro, R.8
Tanuri, A.9
Rehen, S.K.10
-
16
-
-
84930725220
-
Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes
-
V. Gardeux, A. Bosco, J. Li, M.J. Halonen, D. Jackson, F.D. Martinez, and Y.A. Lussier Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes J. Biomed. Inform. 55 2015 94 103
-
(2015)
J. Biomed. Inform.
, vol.55
, pp. 94-103
-
-
Gardeux, V.1
Bosco, A.2
Li, J.3
Halonen, M.J.4
Jackson, D.5
Martinez, F.D.6
Lussier, Y.A.7
-
17
-
-
70349292099
-
Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance
-
D. Ge, J. Fellay, A.J. Thompson, J.S. Simon, K.V. Shianna, T.J. Urban, E.L. Heinzen, P. Qiu, A.H. Bertelsen, A.J. Muir, and et al. Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance Nature 461 2009 399 401
-
(2009)
Nature
, vol.461
, pp. 399-401
-
-
Ge, D.1
Fellay, J.2
Thompson, A.J.3
Simon, J.S.4
Shianna, K.V.5
Urban, T.J.6
Heinzen, E.L.7
Qiu, P.8
Bertelsen, A.H.9
Muir, A.J.10
-
18
-
-
84907193791
-
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
-
S.K. Gire, A. Goba, K.G. Andersen, R.S. Sealfon, D.J. Park, L. Kanneh, S. Jalloh, M. Momoh, M. Fullah, G. Dudas, and et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak Science 345 2014 1369 1372
-
(2014)
Science
, vol.345
, pp. 1369-1372
-
-
Gire, S.K.1
Goba, A.2
Andersen, K.G.3
Sealfon, R.S.4
Park, D.J.5
Kanneh, L.6
Jalloh, S.7
Momoh, M.8
Fullah, M.9
Dudas, G.10
-
19
-
-
84936936043
-
Genetic diversity in the collaborative cross model recapitulates human West Nile virus disease outcomes
-
e00493-e15
-
J.B. Graham, S. Thomas, J. Swarts, A.A. McMillan, M.T. Ferris, M.S. Suthar, P.M. Treuting, R. Ireton, M. Gale Jr., and J.M. Lund Genetic diversity in the collaborative cross model recapitulates human West Nile virus disease outcomes MBio 6 2015 e00493-e15
-
(2015)
MBio
, vol.6
-
-
Graham, J.B.1
Thomas, S.2
Swarts, J.3
McMillan, A.A.4
Ferris, M.T.5
Suthar, M.S.6
Treuting, P.M.7
Ireton, R.8
Gale, M.9
Lund, J.M.10
-
20
-
-
84946606810
-
Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross
-
L.E. Gralinski, M.T. Ferris, D.L. Aylor, A.C. Whitmore, R. Green, M.B. Frieman, D. Deming, V.D. Menachery, D.R. Miller, R.J. Buus, and et al. Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross PLoS Genet. 11 2015 e1005504
-
(2015)
PLoS Genet.
, vol.11
, pp. e1005504
-
-
Gralinski, L.E.1
Ferris, M.T.2
Aylor, D.L.3
Whitmore, A.C.4
Green, R.5
Frieman, M.B.6
Deming, D.7
Menachery, V.D.8
Miller, D.R.9
Buus, R.J.10
-
21
-
-
84942518081
-
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
-
A.L. Greninger, S.N. Naccache, S. Federman, G. Yu, P. Mbala, V. Bres, D. Stryke, J. Bouquet, S. Somasekar, J.M. Linnen, and et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis Genome Med. 7 2015 99
-
(2015)
Genome Med.
, vol.7
, pp. 99
-
-
Greninger, A.L.1
Naccache, S.N.2
Federman, S.3
Yu, G.4
Mbala, P.5
Bres, V.6
Stryke, D.7
Bouquet, J.8
Somasekar, S.9
Linnen, J.M.10
-
22
-
-
84946055193
-
The UCSC Ebola Genome Portal
-
M. Haeussler, D. Karolchik, H. Clawson, B.J. Raney, K.R. Rosenbloom, P.A. Fujita, A.S. Hinrichs, M.L. Speir, C. Eisenhart, A.S. Zweig, and et al. The UCSC Ebola Genome Portal PLoS Curr. 6 2014 6
-
(2014)
PLoS Curr.
, vol.6
, pp. 6
-
-
Haeussler, M.1
Karolchik, D.2
Clawson, H.3
Raney, B.J.4
Rosenbloom, K.R.5
Fujita, P.A.6
Hinrichs, A.S.7
Speir, M.L.8
Eisenhart, C.9
Zweig, A.S.10
-
23
-
-
84885188208
-
Impacts of variation in the human genome on gene regulation
-
R.R. Haraksingh, and M.P. Snyder Impacts of variation in the human genome on gene regulation J. Mol. Biol. 425 2013 3970 3977
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 3970-3977
-
-
Haraksingh, R.R.1
Snyder, M.P.2
-
24
-
-
84928773215
-
Virology. Mutation rate and genotype variation of Ebola virus from Mali case sequences
-
T. Hoenen, D. Safronetz, A. Groseth, K.R. Wollenberg, O.A. Koita, B. Diarra, I.S. Fall, F.C. Haidara, F. Diallo, M. Sanogo, and et al. Virology. Mutation rate and genotype variation of Ebola virus from Mali case sequences Science 348 2015 117 119
-
(2015)
Science
, vol.348
, pp. 117-119
-
-
Hoenen, T.1
Safronetz, D.2
Groseth, A.3
Wollenberg, K.R.4
Koita, O.A.5
Diarra, B.6
Fall, I.S.7
Haidara, F.C.8
Diallo, F.9
Sanogo, M.10
-
25
-
-
84955114356
-
Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool
-
T. Hoenen, A. Groseth, K. Rosenke, R.J. Fischer, A. Hoenen, S.D. Judson, C. Martellaro, D. Falzarano, A. Marzi, R.B. Squires, and et al. Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool Emerg. Infect. Dis. 22 2016 22
-
(2016)
Emerg. Infect. Dis.
, vol.22
, pp. 22
-
-
Hoenen, T.1
Groseth, A.2
Rosenke, K.3
Fischer, R.J.4
Hoenen, A.5
Judson, S.D.6
Martellaro, C.7
Falzarano, D.8
Marzi, A.9
Squires, R.B.10
-
26
-
-
84933671995
-
Genetic study of complex diseases in the post-GWAS era
-
Q. Huang Genetic study of complex diseases in the post-GWAS era J. Genet. Genomics 42 2015 87 98
-
(2015)
J. Genet. Genomics
, vol.42
, pp. 87-98
-
-
Huang, Q.1
-
27
-
-
80052320333
-
Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection
-
Y. Huang, A.K. Zaas, A. Rao, N. Dobigeon, P.J. Woolf, T. Veldman, N.C. ∅ien, M.T. McClain, J.B. Varkey, B. Nicholson, and et al. Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection PLoS Genet. 7 2011 e1002234
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002234
-
-
Huang, Y.1
Zaas, A.K.2
Rao, A.3
Dobigeon, N.4
Woolf, P.J.5
Veldman, T.6
øien, N.C.7
McClain, M.T.8
Varkey, J.B.9
Nicholson, B.10
-
28
-
-
84931561532
-
An intrahepatic transcriptional signature of enhanced immune activity predicts response to peginterferon in chronic hepatitis B
-
L. Jansen, A. de Niet, Z. Makowska, M.T. Dill, K.A. van Dort, V. Terpstra, R. Bart Takkenberg, H.L. Janssen, M.H. Heim, N.A. Kootstra, and H.W. Reesink An intrahepatic transcriptional signature of enhanced immune activity predicts response to peginterferon in chronic hepatitis B Liver Int. 35 2015 1824 1832
-
(2015)
Liver Int.
, vol.35
, pp. 1824-1832
-
-
Jansen, L.1
De Niet, A.2
Makowska, Z.3
Dill, M.T.4
Van Dort, K.A.5
Terpstra, V.6
Bart Takkenberg, R.7
Janssen, H.L.8
Heim, M.H.9
Kootstra, N.A.10
Reesink, H.W.11
-
29
-
-
84906253612
-
Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts
-
L. Josset, N. Tchitchek, L.E. Gralinski, M.T. Ferris, A.J. Eisfeld, R.R. Green, M.J. Thomas, J. Tisoncik-Go, G.P. Schroth, Y. Kawaoka, and et al. Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts RNA Biol. 11 2014 875 890
-
(2014)
RNA Biol.
, vol.11
, pp. 875-890
-
-
Josset, L.1
Tchitchek, N.2
Gralinski, L.E.3
Ferris, M.T.4
Eisfeld, A.J.5
Green, R.R.6
Thomas, M.J.7
Tisoncik-Go, J.8
Schroth, G.P.9
Kawaoka, Y.10
-
31
-
-
34548514438
-
Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity
-
A. Kistler, P.C. Avila, S. Rouskin, D. Wang, T. Ward, S. Yagi, D. Schnurr, D. Ganem, J.L. DeRisi, and H.A. Boushey Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity J. Infect. Dis. 196 2007 817 825
-
(2007)
J. Infect. Dis.
, vol.196
, pp. 817-825
-
-
Kistler, A.1
Avila, P.C.2
Rouskin, S.3
Wang, D.4
Ward, T.5
Yagi, S.6
Schnurr, D.7
Ganem, D.8
DeRisi, J.L.9
Boushey, H.A.10
-
32
-
-
84931405690
-
Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia
-
National Institutes of Health Integrated Research Facility-Frederick Ebola Response Team 2014-2015
-
J.R. Kugelman, M.R. Wiley, S. Mate, J.T. Ladner, B. Beitzel, L. Fakoli, F. Taweh, K. Prieto, J.W. Diclaro, T. Minogue, et al. US Army Medical Research Institute of Infectious Diseases National Institutes of Health Integrated Research Facility-Frederick Ebola Response Team 2014-2015 Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia Emerg. Infect. Dis. 21 2015 1135 1143
-
(2015)
Emerg. Infect. Dis.
, vol.21
, pp. 1135-1143
-
-
Kugelman, J.R.1
Wiley, M.R.2
Mate, S.3
Ladner, J.T.4
Beitzel, B.5
Fakoli, L.6
Taweh, F.7
Prieto, K.8
Diclaro, J.W.9
Minogue, T.10
-
33
-
-
84951139771
-
Evolution and Spread of Ebola Virus in Liberia, 2014-2015
-
J.T. Ladner, M.R. Wiley, S. Mate, G. Dudas, K. Prieto, S. Lovett, E.R. Nagle, B. Beitzel, M.L. Gilbert, L. Fakoli, and et al. Evolution and Spread of Ebola Virus in Liberia, 2014-2015 Cell Host Microbe 18 2015 659 669
-
(2015)
Cell Host Microbe
, vol.18
, pp. 659-669
-
-
Ladner, J.T.1
Wiley, M.R.2
Mate, S.3
Dudas, G.4
Prieto, K.5
Lovett, S.6
Nagle, E.R.7
Beitzel, B.8
Gilbert, M.L.9
Fakoli, L.10
-
34
-
-
33750697985
-
MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005
-
D. Lamson, N. Renwick, V. Kapoor, Z. Liu, G. Palacios, J. Ju, A. Dean, K. St George, T. Briese, and W.I. Lipkin MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005 J. Infect. Dis. 194 2006 1398 1402
-
(2006)
J. Infect. Dis.
, vol.194
, pp. 1398-1402
-
-
Lamson, D.1
Renwick, N.2
Kapoor, V.3
Liu, Z.4
Palacios, G.5
Ju, J.6
Dean, A.7
St George, K.8
Briese, T.9
Lipkin, W.I.10
-
35
-
-
32644490555
-
Suppression of immune function and susceptibility to infections in humans: Association of immune function with clinical disease
-
R.W. Luebke, C. Parks, and M.I. Luster Suppression of immune function and susceptibility to infections in humans: association of immune function with clinical disease J. Immunotoxicol. 1 2004 15 24
-
(2004)
J. Immunotoxicol.
, vol.1
, pp. 15-24
-
-
Luebke, R.W.1
Parks, C.2
Luster, M.I.3
-
36
-
-
84906095562
-
Issues and considerations in the use of serologic biomarkers for classifying vaccination history in household surveys
-
A. MacNeil, C.W. Lee, and V. Dietz Issues and considerations in the use of serologic biomarkers for classifying vaccination history in household surveys Vaccine 32 2014 4893 4900
-
(2014)
Vaccine
, vol.32
, pp. 4893-4900
-
-
MacNeil, A.1
Lee, C.W.2
Dietz, V.3
-
37
-
-
85019264879
-
Genome assembly using Nanopore-guided long and error-free DNA reads
-
M.A. Madoui, S. Engelen, C. Cruaud, C. Belser, L. Bertrand, A. Alberti, A. Lemainque, P. Wincker, and J.M. Aury Genome assembly using Nanopore-guided long and error-free DNA reads BMC Genomics 16 2015 327
-
(2015)
BMC Genomics
, vol.16
, pp. 327
-
-
Madoui, M.A.1
Engelen, S.2
Cruaud, C.3
Belser, C.4
Bertrand, L.5
Alberti, A.6
Lemainque, A.7
Wincker, P.8
Aury, J.M.9
-
38
-
-
0038823524
-
The Genome sequence of the SARS-associated coronavirus
-
M.A. Marra, S.J. Jones, C.R. Astell, R.A. Holt, A. Brooks-Wilson, Y.S. Butterfield, J. Khattra, J.K. Asano, S.A. Barber, S.Y. Chan, and et al. The Genome sequence of the SARS-associated coronavirus Science 300 2003 1399 1404
-
(2003)
Science
, vol.300
, pp. 1399-1404
-
-
Marra, M.A.1
Jones, S.J.2
Astell, C.R.3
Holt, R.A.4
Brooks-Wilson, A.5
Butterfield, Y.S.6
Khattra, J.7
Asano, J.K.8
Barber, S.A.9
Chan, S.Y.10
-
39
-
-
63649083293
-
Label-free DNA biosensors based on functionalized carbon nanotube field effect transistors
-
M.T. Martinez, Y.C. Tseng, N. Ormategui, I. Loinaz, R. Eritja, and J. Bokor Label-free DNA biosensors based on functionalized carbon nanotube field effect transistors Nano Lett. 9 2009 530 536
-
(2009)
Nano Lett.
, vol.9
, pp. 530-536
-
-
Martinez, M.T.1
Tseng, Y.C.2
Ormategui, N.3
Loinaz, I.4
Eritja, R.5
Bokor, J.6
-
40
-
-
84949460157
-
Molecular Evidence of Sexual Transmission of Ebola Virus
-
S.E. Mate, J.R. Kugelman, T.G. Nyenswah, J.T. Ladner, M.R. Wiley, T. Cordier-Lassalle, A. Christie, G.P. Schroth, S.M. Gross, G.J. Davies-Wayne, and et al. Molecular Evidence of Sexual Transmission of Ebola Virus N. Engl. J. Med. 373 2015 2448 2454
-
(2015)
N. Engl. J. Med.
, vol.373
, pp. 2448-2454
-
-
Mate, S.E.1
Kugelman, J.R.2
Nyenswah, T.G.3
Ladner, J.T.4
Wiley, M.R.5
Cordier-Lassalle, T.6
Christie, A.7
Schroth, G.P.8
Gross, S.M.9
Davies-Wayne, G.J.10
-
41
-
-
84961653804
-
T-Cell Immunity to Influenza in Older Adults: A Pathophysiological Framework for Development of More Effective Vaccines
-
J.E. McElhaney, G.A. Kuchel, X. Zhou, S.L. Swain, and L. Haynes T-Cell Immunity to Influenza in Older Adults: A Pathophysiological Framework for Development of More Effective Vaccines Front. Immunol. 7 2016 41
-
(2016)
Front. Immunol.
, vol.7
, pp. 41
-
-
McElhaney, J.E.1
Kuchel, G.A.2
Zhou, X.3
Swain, S.L.4
Haynes, L.5
-
42
-
-
79953859177
-
Utility of a panviral microarray for detection of swine respiratory viruses in clinical samples
-
T.L. Nicholson, D. Kukielka, A.L. Vincent, S.L. Brockmeier, L.C. Miller, and K.S. Faaberg Utility of a panviral microarray for detection of swine respiratory viruses in clinical samples J. Clin. Microbiol. 49 2011 1542 1548
-
(2011)
J. Clin. Microbiol.
, vol.49
, pp. 1542-1548
-
-
Nicholson, T.L.1
Kukielka, D.2
Vincent, A.L.3
Brockmeier, S.L.4
Miller, L.C.5
Faaberg, K.S.6
-
43
-
-
33645466824
-
MassTag polymerase chain reaction for differential diagnosis of viral hemorrhagic fever
-
G. Palacios, T. Briese, V. Kapoor, O. Jabado, Z. Liu, M. Venter, J. Zhai, N. Renwick, A. Grolla, T.W. Geisbert, and et al. MassTag polymerase chain reaction for differential diagnosis of viral hemorrhagic fever Emerg. Infect. Dis. 12 2006 692 695
-
(2006)
Emerg. Infect. Dis.
, vol.12
, pp. 692-695
-
-
Palacios, G.1
Briese, T.2
Kapoor, V.3
Jabado, O.4
Liu, Z.5
Venter, M.6
Zhai, J.7
Renwick, N.8
Grolla, A.9
Geisbert, T.W.10
-
44
-
-
84934981152
-
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone
-
D.J. Park, G. Dudas, S. Wohl, A. Goba, S.L. Whitmer, K.G. Andersen, R.S. Sealfon, J.T. Ladner, J.R. Kugelman, C.B. Matranga, and et al. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone Cell 161 2015 1516 1526
-
(2015)
Cell
, vol.161
, pp. 1516-1526
-
-
Park, D.J.1
Dudas, G.2
Wohl, S.3
Goba, A.4
Whitmer, S.L.5
Andersen, K.G.6
Sealfon, R.S.7
Ladner, J.T.8
Kugelman, J.R.9
Matranga, C.B.10
-
45
-
-
84958068536
-
Real-time, portable genome sequencing for Ebola surveillance
-
J. Quick, N.J. Loman, S. Duraffour, J.T. Simpson, E. Severi, L. Cowley, J.A. Bore, R. Koundouno, G. Dudas, A. Mikhail, and et al. Real-time, portable genome sequencing for Ebola surveillance Nature 530 2016 228 232
-
(2016)
Nature
, vol.530
, pp. 228-232
-
-
Quick, J.1
Loman, N.J.2
Duraffour, S.3
Simpson, J.T.4
Severi, E.5
Cowley, L.6
Bore, J.A.7
Koundouno, R.8
Dudas, G.9
Mikhail, A.10
-
47
-
-
84952845518
-
Probing the Viromic Frontiers
-
e01767-e15
-
A.L. Rasmussen Probing the Viromic Frontiers MBio 6 2015 e01767-e15
-
(2015)
MBio
, vol.6
-
-
Rasmussen, A.L.1
-
48
-
-
84863508882
-
Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients
-
A.L. Rasmussen, N. Tchitchek, N.J. Susnow, A.L. Krasnoselsky, D.L. Diamond, M.M. Yeh, S.C. Proll, M.J. Korth, K.A. Walters, S. Lederer, and et al. Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients Hepatology 56 2012 17 27
-
(2012)
Hepatology
, vol.56
, pp. 17-27
-
-
Rasmussen, A.L.1
Tchitchek, N.2
Susnow, N.J.3
Krasnoselsky, A.L.4
Diamond, D.L.5
Yeh, M.M.6
Proll, S.C.7
Korth, M.J.8
Walters, K.A.9
Lederer, S.10
-
49
-
-
84911371938
-
Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance
-
A.L. Rasmussen, A. Okumura, M.T. Ferris, R. Green, F. Feldmann, S.M. Kelly, D.P. Scott, D. Safronetz, E. Haddock, R. LaCasse, and et al. Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance Science 346 2014 987 991
-
(2014)
Science
, vol.346
, pp. 987-991
-
-
Rasmussen, A.L.1
Okumura, A.2
Ferris, M.T.3
Green, R.4
Feldmann, F.5
Kelly, S.M.6
Scott, D.P.7
Safronetz, D.8
Haddock, E.9
LaCasse, R.10
-
50
-
-
84964276686
-
Zika Virus and Birth Defects - Reviewing the Evidence for Causality
-
Published online April 13, 2016
-
S.A. Rasmussen, D.J. Jamieson, M.A. Honein, and L.R. Petersen Zika Virus and Birth Defects - Reviewing the Evidence for Causality N. Engl. J. Med. 2016 10.1056/NEJMsr1604338 Published online April 13, 2016
-
(2016)
N. Engl. J. Med.
-
-
Rasmussen, S.A.1
Jamieson, D.J.2
Honein, M.A.3
Petersen, L.R.4
-
51
-
-
78049523629
-
Rapid detection of respiratory tract viral infections and coinfections in patients with influenza-like illnesses by use of reverse transcription-PCR DNA microarray systems
-
F. Renois, D. Talmud, A. Huguenin, L. Moutte, C. Strady, J. Cousson, N. Lévêque, and L. Andréoletti Rapid detection of respiratory tract viral infections and coinfections in patients with influenza-like illnesses by use of reverse transcription-PCR DNA microarray systems J. Clin. Microbiol. 48 2010 3836 3842
-
(2010)
J. Clin. Microbiol.
, vol.48
, pp. 3836-3842
-
-
Renois, F.1
Talmud, D.2
Huguenin, A.3
Moutte, L.4
Strady, C.5
Cousson, J.6
Lévêque, N.7
Andréoletti, L.8
-
52
-
-
81355149369
-
Clinical evaluation of multiplex real-time PCR panels for rapid detection of respiratory viral infections
-
S.K. Sanghavi, A. Bullotta, S. Husain, and C.R. Rinaldo Clinical evaluation of multiplex real-time PCR panels for rapid detection of respiratory viral infections J. Med. Virol. 84 2012 162 169
-
(2012)
J. Med. Virol.
, vol.84
, pp. 162-169
-
-
Sanghavi, S.K.1
Bullotta, A.2
Husain, S.3
Rinaldo, C.R.4
-
53
-
-
84926636820
-
Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission
-
S.V. Scarpino, A. Iamarino, C. Wells, D. Yamin, M. Ndeffo-Mbah, N.S. Wenzel, S.J. Fox, T. Nyenswah, F.L. Altice, A.P. Galvani, and et al. Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission Clin. Infect. Dis. 60 2015 1079 1082
-
(2015)
Clin. Infect. Dis.
, vol.60
, pp. 1079-1082
-
-
Scarpino, S.V.1
Iamarino, A.2
Wells, C.3
Yamin, D.4
Ndeffo-Mbah, M.5
Wenzel, N.S.6
Fox, S.J.7
Nyenswah, T.8
Altice, F.L.9
Galvani, A.P.10
-
54
-
-
84937234768
-
Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic
-
E. Simon-Loriere, O. Faye, O. Faye, L. Koivogui, N. Magassouba, S. Keita, J.M. Thiberge, L. Diancourt, C. Bouchier, M. Vandenbogaert, and et al. Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic Nature 524 2015 102 104
-
(2015)
Nature
, vol.524
, pp. 102-104
-
-
Simon-Loriere, E.1
Faye, O.2
Faye, O.3
Koivogui, L.4
Magassouba, N.5
Keita, S.6
Thiberge, J.M.7
Diancourt, L.8
Bouchier, C.9
Vandenbogaert, M.10
-
55
-
-
84952715793
-
Rapid identification of pathogens using molecular techniques
-
T.P. Sloots, M.D. Nissen, A.N. Ginn, and J.R. Iredell Rapid identification of pathogens using molecular techniques Pathology 47 2015 191 198
-
(2015)
Pathology
, vol.47
, pp. 191-198
-
-
Sloots, T.P.1
Nissen, M.D.2
Ginn, A.N.3
Iredell, J.R.4
-
56
-
-
79751527778
-
Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor
-
S. Sorgenfrei, C.Y. Chiu, R.L. Gonzalez Jr., Y.J. Yu, P. Kim, C. Nuckolls, and K.L. Shepard Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor Nat. Nanotechnol. 6 2011 126 132
-
(2011)
Nat. Nanotechnol.
, vol.6
, pp. 126-132
-
-
Sorgenfrei, S.1
Chiu, C.Y.2
Gonzalez, R.L.3
Yu, Y.J.4
Kim, P.5
Nuckolls, C.6
Shepard, K.L.7
-
57
-
-
84926018434
-
Insights into the early epidemic spread of ebola in Sierra Leone provided by viral sequence data
-
T. Stadler, D. Kühnert, D.A. Rasmussen, and L. du Plessis Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence data PLoS Curr. 6 2014 6
-
(2014)
PLoS Curr.
, vol.6
, pp. 6
-
-
Stadler, T.1
Kühnert, D.2
Rasmussen, D.A.3
Du Plessis, L.4
-
58
-
-
32244440113
-
Label-free detection of DNA hybridization using carbon nanotube network field-effect transistors
-
A. Star, E. Tu, J. Niemann, J.C. Gabriel, C.S. Joiner, and C. Valcke Label-free detection of DNA hybridization using carbon nanotube network field-effect transistors Proc. Natl. Acad. Sci. USA 103 2006 921 926
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 921-926
-
-
Star, A.1
Tu, E.2
Niemann, J.3
Gabriel, J.C.4
Joiner, C.S.5
Valcke, C.6
-
59
-
-
84880769645
-
Sequential waves of gene expression in patients with clinically defined dengue illnesses reveal subtle disease phases and predict disease severity
-
P. Sun, J. García, G. Comach, M.T. Vahey, Z. Wang, B.M. Forshey, A.C. Morrison, G. Sierra, I. Bazan, C. Rocha, and et al. Sequential waves of gene expression in patients with clinically defined dengue illnesses reveal subtle disease phases and predict disease severity PLoS Negl. Trop. Dis. 7 2013 e2298
-
(2013)
PLoS Negl. Trop. Dis.
, vol.7
, pp. e2298
-
-
Sun, P.1
García, J.2
Comach, G.3
Vahey, M.T.4
Wang, Z.5
Forshey, B.M.6
Morrison, A.C.7
Sierra, G.8
Bazan, I.9
Rocha, C.10
-
60
-
-
84967328422
-
Zika Virus Infects Human Cortical Neural Progenitors and Attenuates Their Growth
-
Published online March 4, 2016
-
H. Tang, C. Hammack, S.C. Ogden, Z. Wen, X. Qian, Y. Li, B. Yao, J. Shin, F. Zhang, E.M. Lee, and et al. Zika Virus Infects Human Cortical Neural Progenitors and Attenuates Their Growth Cell Stem Cell 2016 10.1016/j.stem.2016.02.016 Published online March 4, 2016
-
(2016)
Cell Stem Cell
-
-
Tang, H.1
Hammack, C.2
Ogden, S.C.3
Wen, Z.4
Qian, X.5
Li, Y.6
Yao, B.7
Shin, J.8
Zhang, F.9
Lee, E.M.10
-
61
-
-
70349966196
-
Genetic variation in IL28B and spontaneous clearance of hepatitis C virus
-
D.L. Thomas, C.L. Thio, M.P. Martin, Y. Qi, D. Ge, C. O'Huigin, J. Kidd, K. Kidd, S.I. Khakoo, G. Alexander, and et al. Genetic variation in IL28B and spontaneous clearance of hepatitis C virus Nature 461 2009 798 801
-
(2009)
Nature
, vol.461
, pp. 798-801
-
-
Thomas, D.L.1
Thio, C.L.2
Martin, M.P.3
Qi, Y.4
Ge, D.5
O'Huigin, C.6
Kidd, J.7
Kidd, K.8
Khakoo, S.I.9
Alexander, G.10
-
62
-
-
84930394639
-
Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone
-
Y.G. Tong, W.F. Shi, D. Liu, J. Qian, L. Liang, X.C. Bo, J. Liu, H.G. Ren, H. Fan, M. Ni, et al. China Mobile Laboratory Testing Team in Sierra Leone Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone Nature 524 2015 93 96
-
(2015)
Nature
, vol.524
, pp. 93-96
-
-
Tong, Y.G.1
Shi, W.F.2
Liu, D.3
Qian, J.4
Liang, L.5
Bo, X.C.6
Liu, J.7
Ren, H.G.8
Fan, H.9
Ni, M.10
-
63
-
-
0031281354
-
Rapid detection of different RNA respiratory virus species by multiplex RT-PCR: Application to clinical specimens
-
M. Valassina, A.M. Cuppone, M.G. Cusi, and P.E. Valensin Rapid detection of different RNA respiratory virus species by multiplex RT-PCR: application to clinical specimens Clin. Diagn. Virol. 8 1997 227 232
-
(1997)
Clin. Diagn. Virol.
, vol.8
, pp. 227-232
-
-
Valassina, M.1
Cuppone, A.M.2
Cusi, M.G.3
Valensin, P.E.4
-
64
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
D. Wang, L. Coscoy, M. Zylberberg, P.C. Avila, H.A. Boushey, D. Ganem, and J.L. DeRisi Microarray-based detection and genotyping of viral pathogens Proc. Natl. Acad. Sci. USA 99 2002 15687 15692
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
DeRisi, J.L.7
-
65
-
-
84938851187
-
MinION nanopore sequencing of an influenza genome
-
J. Wang, N.E. Moore, Y.M. Deng, D.A. Eccles, and R.J. Hall MinION nanopore sequencing of an influenza genome Front Microbiol 6 2015 766
-
(2015)
Front Microbiol
, vol.6
, pp. 766
-
-
Wang, J.1
Moore, N.E.2
Deng, Y.M.3
Eccles, D.A.4
Hall, R.J.5
-
66
-
-
84963668236
-
From Mosquitos to Humans: Genetic Evolution of Zika Virus
-
this issue
-
L. Wang, S.G. Valderramos, A. Wu, S. Ouyang, C. Li, P. Brasil, M. Bonaldo, T. Coates, K. Nielsen-Saines, T. Jiang, and et al. From Mosquitos to Humans: Genetic Evolution of Zika Virus Cell Host Microbe 19 2016 561 565 this issue
-
(2016)
Cell Host Microbe
, vol.19
, pp. 561-565
-
-
Wang, L.1
Valderramos, S.G.2
Wu, A.3
Ouyang, S.4
Li, C.5
Brasil, P.6
Bonaldo, M.7
Coates, T.8
Nielsen-Saines, K.9
Jiang, T.10
-
67
-
-
84956624157
-
Enhanced virome sequencing using targeted sequence capture
-
T.N. Wylie, K.M. Wylie, B.N. Herter, and G.A. Storch Enhanced virome sequencing using targeted sequence capture Genome Res. 25 2015 1910 1920
-
(2015)
Genome Res.
, vol.25
, pp. 1910-1920
-
-
Wylie, T.N.1
Wylie, K.M.2
Herter, B.N.3
Storch, G.A.4
-
68
-
-
84906249367
-
Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression
-
H. Xiong, J. Morrison, M.T. Ferris, L.E. Gralinski, A.C. Whitmore, R. Green, M.J. Thomas, J. Tisoncik-Go, G.P. Schroth, F. Pardo-Manuel de Villena, and et al. Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression G3 (Bethesda) 4 2014 1429 1444
-
(2014)
G3 (Bethesda)
, vol.4
, pp. 1429-1444
-
-
Xiong, H.1
Morrison, J.2
Ferris, M.T.3
Gralinski, L.E.4
Whitmore, A.C.5
Green, R.6
Thomas, M.J.7
Tisoncik-Go, J.8
Schroth, G.P.9
Pardo-Manuel De Villena, F.10
-
69
-
-
84908375190
-
A rapid and sensitive detection of HBV DNA using a nanopore sensor
-
F. Yao, Y. Zhang, Y. Wei, and X. Kang A rapid and sensitive detection of HBV DNA using a nanopore sensor Chem. Commun. (Camb.) 50 2014 13853 13856
-
(2014)
Chem. Commun. (Camb.)
, vol.50
, pp. 13853-13856
-
-
Yao, F.1
Zhang, Y.2
Wei, Y.3
Kang, X.4
-
70
-
-
84884689519
-
A host-based RT-PCR gene expression signature to identify acute respiratory viral infection
-
A.K. Zaas, T. Burke, M. Chen, M. McClain, B. Nicholson, T. Veldman, E.L. Tsalik, V. Fowler, E.P. Rivers, R. Otero, and et al. A host-based RT-PCR gene expression signature to identify acute respiratory viral infection Sci. Transl. Med. 5 2013 203ra126
-
(2013)
Sci. Transl. Med.
, vol.5
, pp. 203ra126
-
-
Zaas, A.K.1
Burke, T.2
Chen, M.3
McClain, M.4
Nicholson, B.5
Veldman, T.6
Tsalik, E.L.7
Fowler, V.8
Rivers, E.P.9
Otero, R.10
|