메뉴 건너뛰기




Volumn 13, Issue 7, 2016, Pages 591-597

A bacterial phytochrome-based optogenetic system controllable with near-infrared light

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; BILIVERDIN; PHYTOCHROME; PHYTOCHROME BPHP1; PHYTOCHROME PPSR2; UNCLASSIFIED DRUG; PHOTOPROTEIN;

EID: 84966480803     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.3864     Document Type: Article
Times cited : (182)

References (43)
  • 1
    • 84930732185 scopus 로고    scopus 로고
    • Natural photoreceptors as a source of fluorescent proteins, biosensors, and optogenetic tools
    • Shcherbakova, D.M., Shemetov, A.A., Kaberniuk, A.A. & Verkhusha, V.V. Natural photoreceptors as a source of fluorescent proteins, biosensors, and optogenetic tools. Annu. Rev. Biochem. 84, 519-550 (2015).
    • (2015) Annu. Rev. Biochem. , vol.84 , pp. 519-550
    • Shcherbakova, D.M.1    Shemetov, A.A.2    Kaberniuk, A.A.3    Verkhusha, V.V.4
  • 2
    • 84894057197 scopus 로고    scopus 로고
    • An optogenetic gene expression system with rapid activation and deactivation kinetics
    • Motta-Mena, L.B. et al. An optogenetic gene expression system with rapid activation and deactivation kinetics. Nat. Chem. Biol. 10, 196-202 (2014).
    • (2014) Nat. Chem. Biol. , vol.10 , pp. 196-202
    • Motta-Mena, L.B.1
  • 3
    • 84923899962 scopus 로고    scopus 로고
    • Engineered pairs of distinct photoswitches for optogenetic control of cellular proteins
    • Kawano, F., Suzuki, H., Furuya, A. & Sato, M. Engineered pairs of distinct photoswitches for optogenetic control of cellular proteins. Nat. Commun. 6, 6256 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 6256
    • Kawano, F.1    Suzuki, H.2    Furuya, A.3    Sato, M.4
  • 4
    • 78651396502 scopus 로고    scopus 로고
    • Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa
    • Stierl, M. et al. Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa. J. Biol. Chem. 286, 1181-1188 (2011).
    • (2011) J. Biol. Chem. , vol.286 , pp. 1181-1188
    • Stierl, M.1
  • 5
    • 84908520377 scopus 로고    scopus 로고
    • An optimized optogenetic clustering tool for probing protein interaction and function
    • Taslimi, A. et al. An optimized optogenetic clustering tool for probing protein interaction and function. Nat. Commun. 5, 4925 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 4925
    • Taslimi, A.1
  • 6
    • 84901843462 scopus 로고    scopus 로고
    • Reversible protein inactivation by optogenetic trapping in cells
    • Lee, S. et al. Reversible protein inactivation by optogenetic trapping in cells. Nat. Methods 11, 633-636 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 633-636
    • Lee, S.1
  • 7
    • 0033584359 scopus 로고    scopus 로고
    • Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light
    • Ni, M., Tepperman, J.M. & Quail, P.H. Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light. Nature 400, 781-784 (1999).
    • (1999) Nature , vol.400 , pp. 781-784
    • Ni, M.1    Tepperman, J.M.2    Quail, P.H.3
  • 8
    • 70350070364 scopus 로고    scopus 로고
    • Spatiotemporal control of cell signalling using a light-switchable protein interaction
    • Levskaya, A., Weiner, O.D., Lim, W.A. & Voigt, C.A. Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature 461, 997-1001 (2009).
    • (2009) Nature , vol.461 , pp. 997-1001
    • Levskaya, A.1    Weiner, O.D.2    Lim, W.A.3    Voigt, C.A.4
  • 9
    • 84989846607 scopus 로고    scopus 로고
    • Light-activated nuclear translocation of adeno-associated virus nanoparticles using phytochrome B for enhanced, tunable, and spatially programmable gene delivery
    • Gomez, E.J., Gerhardt, K., Judd, J., Tabor, J.J. & Suh, J. Light-activated nuclear translocation of adeno-associated virus nanoparticles using phytochrome B for enhanced, tunable, and spatially programmable gene delivery. ACS Nano. 10, 225-237 (2016).
    • (2016) ACS Nano. , vol.10 , pp. 225-237
    • Gomez, E.J.1    Gerhardt, K.2    Judd, J.3    Tabor, J.J.4    Suh, J.5
  • 10
    • 0037236238 scopus 로고    scopus 로고
    • Shedding light onto live molecular targets
    • Weissleder, R. & Ntziachristos, V. Shedding light onto live molecular targets. Nat. Med. 9, 123-128 (2003).
    • (2003) Nat. Med. , vol.9 , pp. 123-128
    • Weissleder, R.1    Ntziachristos, V.2
  • 11
    • 80053896548 scopus 로고    scopus 로고
    • Phytochrome structure and photochemistry: Recent advances toward a complete molecular picture
    • Ulijasz, A.T. & Vierstra, R.D. Phytochrome structure and photochemistry: recent advances toward a complete molecular picture. Curr. Opin. Plant Biol. 14, 498-506 (2011).
    • (2011) Curr. Opin. Plant Biol. , vol.14 , pp. 498-506
    • Ulijasz, A.T.1    Vierstra, R.D.2
  • 12
    • 84878742725 scopus 로고    scopus 로고
    • Engineering of bacterial phytochromes for near-infrared imaging, sensing, and light-control in mammals
    • Piatkevich, K.D., Subach, F.V. & Verkhusha, V.V. Engineering of bacterial phytochromes for near-infrared imaging, sensing, and light-control in mammals. Chem. Soc. Rev. 42, 3441-3452 (2013).
    • (2013) Chem. Soc. Rev. , vol.42 , pp. 3441-3452
    • Piatkevich, K.D.1    Subach, F.V.2    Verkhusha, V.V.3
  • 13
    • 84876520276 scopus 로고    scopus 로고
    • A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells
    • Müller, K. et al. A red/far-red light-responsive bi-stable toggle switch to control gene expression in mammalian cells. Nucleic Acids Res. 41, e77 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. e77
    • Müller, K.1
  • 14
    • 84905196028 scopus 로고    scopus 로고
    • In vivo image analysis using iRFP transgenic mice
    • Tran, M.T. et al. In vivo image analysis using iRFP transgenic mice. Exp. Anim. 63, 311-319 (2014).
    • (2014) Exp. Anim. , vol.63 , pp. 311-319
    • Tran, M.T.1
  • 15
    • 84935005822 scopus 로고    scopus 로고
    • Near-infrared fluorescent proteins engineered from bacterial phytochromes
    • Shcherbakova, D.M., Baloban, M. & Verkhusha, V.V. Near-infrared fluorescent proteins engineered from bacterial phytochromes. Curr. Opin. Chem. Biol. 27, 52-63 (2015).
    • (2015) Curr. Opin. Chem. Biol. , vol.27 , pp. 52-63
    • Shcherbakova, D.M.1    Baloban, M.2    Verkhusha, V.V.3
  • 16
    • 84881481582 scopus 로고    scopus 로고
    • Near-infrared fluorescent proteins for multicolor in vivo imaging
    • Shcherbakova, D.M. & Verkhusha, V.V. Near-infrared fluorescent proteins for multicolor in vivo imaging. Nat. Methods 10, 751-754 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 751-754
    • Shcherbakova, D.M.1    Verkhusha, V.V.2
  • 17
    • 84947915622 scopus 로고    scopus 로고
    • Molecular basis of spectral diversity in near-infrared phytochrome-based fluorescent proteins
    • Shcherbakova, D.M. et al. Molecular basis of spectral diversity in near-infrared phytochrome-based fluorescent proteins. Chem. Biol. 22, 1540-1551 (2015).
    • (2015) Chem. Biol. , vol.22 , pp. 1540-1551
    • Shcherbakova, D.M.1
  • 18
    • 84880296970 scopus 로고    scopus 로고
    • Far-red light photoactivatable near-infrared fluorescent proteins engineered from a bacterial phytochrome
    • Piatkevich, K.D., Subach, F.V. & Verkhusha, V.V. Far-red light photoactivatable near-infrared fluorescent proteins engineered from a bacterial phytochrome. Nat. Commun. 4, 2153 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2153
    • Piatkevich, K.D.1    Subach, F.V.2    Verkhusha, V.V.3
  • 19
    • 84883170184 scopus 로고    scopus 로고
    • A near-infrared BiFC reporter for in vivo imaging of protein-protein interactions
    • Filonov, G.S. & Verkhusha, V.V. A near-infrared BiFC reporter for in vivo imaging of protein-protein interactions. Chem. Biol. 20, 1078-1086 (2013).
    • (2013) Chem. Biol. , vol.20 , pp. 1078-1086
    • Filonov, G.S.1    Verkhusha, V.V.2
  • 21
    • 84904314045 scopus 로고    scopus 로고
    • Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications
    • Ryu, M.H. & Gomelsky, M. Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications. ACS Synth. Biol. 3, 802-810 (2014).
    • (2014) ACS Synth. Biol. , vol.3 , pp. 802-810
    • Ryu, M.H.1    Gomelsky, M.2
  • 22
    • 84904317842 scopus 로고    scopus 로고
    • Engineering adenylate cyclases regulated by near-infrared window light
    • Ryu, M.H. et al. Engineering adenylate cyclases regulated by near-infrared window light. Proc. Natl. Acad. Sci. USA 111, 10167-10172 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 10167-10172
    • Ryu, M.H.1
  • 23
    • 84902590147 scopus 로고    scopus 로고
    • Engineering of a red-light-activated human cAMP/cGMP-specific phosphodiesterase
    • Gasser, C. et al. Engineering of a red-light-activated human cAMP/cGMP-specific phosphodiesterase. Proc. Natl. Acad. Sci. USA 111, 8803-8808 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 8803-8808
    • Gasser, C.1
  • 24
    • 34249728355 scopus 로고    scopus 로고
    • High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution
    • Wagner, J.R., Zhang, J., Brunzelle, J.S., Vierstra, R.D. & Forest, K.T. High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. J. Biol. Chem. 282, 12298-12309 (2007).
    • (2007) J. Biol. Chem. , vol.282 , pp. 12298-12309
    • Wagner, J.R.1    Zhang, J.2    Brunzelle, J.S.3    Vierstra, R.D.4    Forest, K.T.5
  • 25
    • 77951166118 scopus 로고    scopus 로고
    • A brief history of phytochromes
    • Rockwell, N.C. & Lagarias, J.C. A brief history of phytochromes. ChemPhysChem 11, 1172-1180 (2010).
    • (2010) ChemPhysChem , vol.11 , pp. 1172-1180
    • Rockwell, N.C.1    Lagarias, J.C.2
  • 26
    • 77957369354 scopus 로고    scopus 로고
    • Bathy phytochromes in rhizobial soil bacteria
    • Rottwinkel, G., Oberpichler, I. & Lamparter, T. Bathy phytochromes in rhizobial soil bacteria. J. Bacteriol. 192, 5124-5133 (2010).
    • (2010) J. Bacteriol. , vol.192 , pp. 5124-5133
    • Rottwinkel, G.1    Oberpichler, I.2    Lamparter, T.3
  • 27
    • 38749129659 scopus 로고    scopus 로고
    • Dual role for a bacteriophytochrome in the bioenergetic control of Rhodopseudomonas palustris: Enhancement of photosystem synthesis and limitation of respiration
    • Kojadinovic, M. et al. Dual role for a bacteriophytochrome in the bioenergetic control of Rhodopseudomonas palustris: enhancement of photosystem synthesis and limitation of respiration. Biochim. Biophys. Acta 1777, 163-172 (2008).
    • (2008) Biochim. Biophys. Acta , vol.1777 , pp. 163-172
    • Kojadinovic, M.1
  • 28
    • 84864860526 scopus 로고    scopus 로고
    • Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor
    • Bellini, D. & Papiz, M.Z. Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor. Structure 20, 1436-1446 (2012).
    • (2012) Structure , vol.20 , pp. 1436-1446
    • Bellini, D.1    Papiz, M.Z.2
  • 29
    • 0034795425 scopus 로고    scopus 로고
    • Endocytic protein intersectin-l regulates actin assembly via Cdc42 and N-WASP
    • Hussain, N.K. et al. Endocytic protein intersectin-l regulates actin assembly via Cdc42 and N-WASP. Nat. Cell Biol. 3, 927-932 (2001).
    • (2001) Nat. Cell Biol. , vol.3 , pp. 927-932
    • Hussain, N.K.1
  • 30
    • 0032559362 scopus 로고    scopus 로고
    • Rho GTPases and the actin cytoskeleton
    • Hall, A. Rho GTPases and the actin cytoskeleton. Science 279, 509-514 (1998).
    • (1998) Science , vol.279 , pp. 509-514
    • Hall, A.1
  • 31
    • 0028961293 scopus 로고
    • Rho, rac, and cdc42 GTPases regulate the assembly of multimolecular focal complexes associated with actin stress fibers, lamellipodia, and filopodia
    • Nobes, C.D. & Hall, A. Rho, rac, and cdc42 GTPases regulate the assembly of multimolecular focal complexes associated with actin stress fibers, lamellipodia, and filopodia. Cell 81, 53-62 (1995).
    • (1995) Cell , vol.81 , pp. 53-62
    • Nobes, C.D.1    Hall, A.2
  • 32
    • 0034087676 scopus 로고    scopus 로고
    • Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system
    • Orth, P., Schnappinger, D., Hillen, W., Saenger, W. & Hinrichs, W. Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system. Nat. Struct. Biol. 7, 215-219 (2000).
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 215-219
    • Orth, P.1    Schnappinger, D.2    Hillen, W.3    Saenger, W.4    Hinrichs, W.5
  • 33
    • 84862776564 scopus 로고    scopus 로고
    • Spatiotemporal control of gene expression by a light-switchable transgene system
    • Wang, X., Chen, X. & Yang, Y. Spatiotemporal control of gene expression by a light-switchable transgene system. Nat. Methods 9, 266-269 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 266-269
    • Wang, X.1    Chen, X.2    Yang, Y.3
  • 34
    • 84941314867 scopus 로고    scopus 로고
    • A light-switchable bidirectional expression module allowing simultaneous regulation of multiple genes
    • Chen, X., Li, T., Wang, X. & Yang, Y. A light-switchable bidirectional expression module allowing simultaneous regulation of multiple genes. Biochem. Biophys. Res. Commun. 465, 769-776 (2015).
    • (2015) Biochem. Biophys. Res. Commun. , vol.465 , pp. 769-776
    • Chen, X.1    Li, T.2    Wang, X.3    Yang, Y.4
  • 35
    • 77955379515 scopus 로고    scopus 로고
    • The power of reversibility regulating gene activities via tetracycline-controlled transcription
    • Schönig, K., Bujard, H. & Gossen, M. The power of reversibility regulating gene activities via tetracycline-controlled transcription. Methods Enzymol. 477, 429-453 (2010).
    • (2010) Methods Enzymol. , vol.477 , pp. 429-453
    • Schönig, K.1    Bujard, H.2    Gossen, M.3
  • 37
    • 84890036078 scopus 로고    scopus 로고
    • Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module
    • Toettcher, J.E., Weiner, O.D. & Lim, W.A. Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module. Cell 155, 1422-1434 (2013).
    • (2013) Cell , vol.155 , pp. 1422-1434
    • Toettcher, J.E.1    Weiner, O.D.2    Lim, W.A.3
  • 38
    • 84883851129 scopus 로고    scopus 로고
    • Synthesis of phycocyanobilin in mammalian cells
    • Müller, K. et al. Synthesis of phycocyanobilin in mammalian cells. Chem. Commun. (Camb.) 49, 8970-8972 (2013).
    • (2013) Chem. Commun. (Camb.) , vol.49 , pp. 8970-8972
    • Müller, K.1
  • 40
    • 84867084476 scopus 로고    scopus 로고
    • Improving FRET dynamic range with bright green and red fluorescent proteins
    • Lam, A.J. et al. Improving FRET dynamic range with bright green and red fluorescent proteins. Nat. Methods 9, 1005-1012 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 1005-1012
    • Lam, A.J.1
  • 41
    • 0036317929 scopus 로고    scopus 로고
    • Structure-function analysis of the inverted terminal repeats of the sleeping beauty transposon
    • Cui, Z., Geurts, A.M., Liu, G., Kaufman, C.D. & Hackett, P.B. Structure-function analysis of the inverted terminal repeats of the sleeping beauty transposon. J. Mol. Biol. 318, 1221-1235 (2002).
    • (2002) J. Mol. Biol. , vol.318 , pp. 1221-1235
    • Cui, Z.1    Geurts, A.M.2    Liu, G.3    Kaufman, C.D.4    Hackett, P.B.5
  • 42
    • 84891939928 scopus 로고    scopus 로고
    • An internal ribosome entry site (IRES) mutant library for tuning expression level of multiple genes in mammalian cells
    • Koh, E.Y. et al. An internal ribosome entry site (IRES) mutant library for tuning expression level of multiple genes in mammalian cells. PLoS ONE 8, e82100 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e82100
    • Koh, E.Y.1
  • 43
    • 0032805251 scopus 로고    scopus 로고
    • Hydrodynamics-based transfection in animals by systemic administration of plasmid DNA
    • Liu, F., Song, Y. & Liu, D. Hydrodynamics-based transfection in animals by systemic administration of plasmid DNA. Gene Ther. 6, 1258-1266 (1999).
    • (1999) Gene Ther. , vol.6 , pp. 1258-1266
    • Liu, F.1    Song, Y.2    Liu, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.