A near-infrared bifc reporter for in vivo imaging of protein-protein interactions

Chemistry and Biology

Volumn 20, Issue 8, 2013, Pages 1078-1086

  Filonov, Grigory S ^a,b   Verkhusha, Vladislav V ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; BIMOLECULAR FLUORESCENCE COMPLEMENTATION; COMPLEX FORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; FEMALE; IN VIVO STUDY; MOUSE; NONHUMAN; NUCLEAR LOCALIZATION SIGNAL; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; SITE DIRECTED MUTAGENESIS;

BACTERIA (MICROORGANISMS); MAMMALIA;

EID: 84883170184     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2013.06.009     Document Type: Article

References (37)

1. L.A. Banaszynski, C.W. Liu, and T.J. Wandless Characterization of the FKBP.rapamycin.FRB ternary complex J. Am. Chem. Soc. 127 2005 4715 4721
2. J. Chu, Z. Zhang, Y. Zheng, J. Yang, L. Qin, J. Lu, Z.L. Huang, S. Zeng, and Q. Luo A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions Biosens. Bioelectron. 25 2009 234 239
3. G. De Crescenzo, J.R. Litowski, R.S. Hodges, and M.D. O'Connor-McCourt Real-time monitoring of the interactions of two-stranded de novo designed coiled-coils: effect of chain length on the kinetic and thermodynamic constants of binding Biochemistry 42 2003 1754 1763
4. V.V. Demidov, N.V. Dokholyan, C. Witte-Hoffmann, P. Chalasani, H.W. Yiu, F. Ding, Y. Yu, C.R. Cantor, and N.E. Broude Fast complementation of split fluorescent protein triggered by DNA hybridization Proc. Natl. Acad. Sci. USA 103 2006 2052 2056
5. J.Y. Fan, Z.Q. Cui, H.P. Wei, Z.P. Zhang, Y.F. Zhou, Y.P. Wang, and X.E. Zhang Split mCherry as a new red bimolecular fluorescence complementation system for visualizing protein-protein interactions in living cells Biochem. Biophys. Res. Commun. 367 2008 47 53
6. E.H. Feinberg, M.K. Vanhoven, A. Bendesky, G. Wang, R.D. Fetter, K. Shen, and C.I. Bargmann GFP Reconstitution Across Synaptic Partners (GRASP) defines cell contacts and synapses in living nervous systems Neuron 57 2008 353 363
7. G.S. Filonov, K.D. Piatkevich, L.M. Ting, J. Zhang, K. Kim, and V.V. Verkhusha Bright and stable near-infrared fluorescent protein for in vivo imaging Nat. Biotechnol. 29 2011 757 761
8. G.S. Filonov, A. Krumholz, J. Xia, J. Yao, L.V. Wang, and V.V. Verkhusha Deep-tissue photoacoustic tomography of a genetically encoded near-infrared fluorescent probe Angew. Chem. Int. Ed. Engl. 51 2012 1448 1451
9. I. Ghosh, A.D. Hamilton, and L. Regan Antiparallel leucine zipper-directed protein reassembly: application to the green fluorescent protein J. Am. Chem. Soc. 122 2000 5658 5659
10. E. Giraud, S. Zappa, L. Vuillet, J.M. Adriano, L. Hannibal, J. Fardoux, C. Berthomieu, P. Bouyer, D. Pignol, and A. Verméglio A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris J. Biol. Chem. 280 2005 32389 32397
11. J. Hashimoto, T. Watanabe, T. Seki, S. Karasawa, M. Izumikawa, T. Seki, S. Iemura, T. Natsume, N. Nomura, and N. Goshima Novel in vitro protein fragment complementation assay applicable to high-throughput screening in a 1536-well format J. Biomol. Screen. 14 2009 970 979
12. C.D. Hu, and T.K. Kerppola Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis Nat. Biotechnol. 21 2003 539 545
13. C.D. Hu, Y. Chinenov, and T.K. Kerppola Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation Mol. Cell 9 2002 789 798
14. G. Jach, M. Pesch, K. Richter, S. Frings, and J.F. Uhrig An improved mRFP1 adds red to bimolecular fluorescence complementation Nat. Methods 3 2006 597 600
15. N. Johnsson, and A. Varshavsky Split ubiquitin as a sensor of protein interactions in vivo Proc. Natl. Acad. Sci. USA 91 1994 10340 10344
16. T.K. Kerppola Visualization of molecular interactions using bimolecular fluorescence complementation analysis: characteristics of protein fragment complementation Chem. Soc. Rev. 38 2009 2876 2886
17. Y. Kodama, and C.D. Hu An improved bimolecular fluorescence complementation assay with a high signal-to-noise ratio Biotechniques 49 2010 793 805
18. Y.R. Lee, J.H. Park, S.H. Hahm, L.W. Kang, J.H. Chung, K.H. Nam, K.Y. Hwang, I.C. Kwon, and Y.S. Han Development of bimolecular fluorescence complementation using Dronpa for visualization of protein-protein interactions in cells Mol. Imaging Biol. 12 2010 468 478
19. K.E. Luker, M.C. Smith, G.D. Luker, S.T. Gammon, H. Piwnica-Worms, and D. Piwnica-Worms Kinetics of regulated protein-protein interactions revealed with firefly luciferase complementation imaging in cells and living animals Proc. Natl. Acad. Sci. USA 101 2004 12288 12293
20. K.E. Luker, L.A. Mihalko, B.T. Schmidt, S.A. Lewin, P. Ray, D. Shcherbo, D.M. Chudakov, and G.D. Luker In vivo imaging of ligand receptor binding with Gaussia luciferase complementation Nat. Med. 18 2012 172 177
21. M. Marfori, A. Mynott, J.J. Ellis, A.M. Mehdi, N.F. Saunders, P.M. Curmi, J.K. Forwood, M. Bodén, and B. Kobe Molecular basis for specificity of nuclear import and prediction of nuclear localization Biochim. Biophys. Acta 1813 2011 1562 1577
22. T.F. Massoud, R. Paulmurugan, and S.S. Gambhir A molecularly engineered split reporter for imaging protein-protein interactions with positron emission tomography Nat. Med. 16 2010 921 926
23. J.P. Morgenstern, and H. Land Advanced mammalian gene transfer: high titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line Nucleic Acids Res. 18 1990 3587 3596
24. C. Nakagawa, K. Inahata, S. Nishimura, and K. Sugimoto Improvement of a Venus-based bimolecular fluorescence complementation assay to visualize bFos-bJun interaction in living cells Biosci. Biotechnol. Biochem. 75 2011 1399 1401
25. R. Paulmurugan, Y. Umezawa, and S.S. Gambhir Noninvasive imaging of protein-protein interactions in living subjects by using reporter protein complementation and reconstitution strategies Proc. Natl. Acad. Sci. USA 99 2002 15608 15613
26. K.D. Piatkevich, J. Hulit, O.M. Subach, B. Wu, A. Abdulla, J.E. Segall, and V.V. Verkhusha Monomeric red fluorescent proteins with a large Stokes shift Proc. Natl. Acad. Sci. USA 107 2010 5369 5374
27. S.S. Shekhawat, J.R. Porter, A. Sriprasad, and I. Ghosh An autoinhibited coiled-coil design strategy for split-protein protease sensors J. Am. Chem. Soc. 131 2009 15284 15290
28. X. Shu, A. Royant, M.Z. Lin, T.A. Aguilera, V. Lev-Ram, P.A. Steinbach, and R.Y. Tsien Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome Science 324 2009 804 807
29. Y.J. Shyu, and C.D. Hu Fluorescence complementation: an emerging tool for biological research Trends Biotechnol. 26 2008 622 630
30. Y.J. Shyu, H. Liu, X. Deng, and C.D. Hu Identification of new fluorescent protein fragments for bimolecular fluorescence complementation analysis under physiological conditions Biotechniques 40 2006 61 66
31. R.L. Strack, B. Hein, D. Bhattacharyya, S.W. Hell, R.J. Keenan, and B.S. Glick A rapidly maturing far-red derivative of DsRed-Express2 for whole-cell labeling Biochemistry 48 2009 8279 8281
32. O.M. Subach, I.S. Gundorov, M. Yoshimura, F.V. Subach, J. Zhang, D. Grüenwald, E.A. Souslova, D.M. Chudakov, and V.V. Verkhusha Conversion of red fluorescent protein into a bright blue probe Chem. Biol. 15 2008 1116 1124
33. O.M. Subach, P.J. Cranfill, M.W. Davidson, and V.V. Verkhusha An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore PLoS ONE 6 2011 e28674
34. T. Ueyama, T. Kusakabe, S. Karasawa, T. Kawasaki, A. Shimizu, J. Son, T.L. Leto, A. Miyawaki, and N. Saito Sequential binding of cytosolic Phox complex to phagosomes through regulated adaptor proteins: evaluation using the novel monomeric Kusabira-Green System and live imaging of phagocytosis J. Immunol. 181 2008 629 640
35. V. Villalobos, S. Naik, M. Bruinsma, R.S. Dothager, M.H. Pan, M. Samrakandi, B. Moss, A. Elhammali, and D. Piwnica-Worms Dual-color click beetle luciferase heteroprotein fragment complementation assays Chem. Biol. 17 2010 1018 1029
36. J.R. Wagner, J.S. Brunzelle, K.T. Forest, and R.D. Vierstra A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome Nature 438 2005 325 331
37. A. Wegerer, T. Sun, and J. Altenbuchner Optimization of an E. coli L-rhamnose-inducible expression vector: test of various genetic module combinations BMC Biotechnol. 8 2008 2