-
1
-
-
84875781345
-
Diversity and distribution of marine Synechococcus: Multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean
-
Ahlgren NA, Rocap G. (2012). Diversity and distribution of marine Synechococcus: Multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean. Front Microbiol 3: 1-24.
-
(2012)
Front Microbiol
, vol.3
, pp. 1-24
-
-
Ahlgren, N.A.1
Rocap, G.2
-
2
-
-
33644961434
-
Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies
-
Ahlgren NA, Rocap G, Chisholm SW. (2006). Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environ Microbiol 8: 441-454.
-
(2006)
Environ Microbiol
, vol.8
, pp. 441-454
-
-
Ahlgren, N.A.1
Rocap, G.2
Chisholm, S.W.3
-
3
-
-
0030864590
-
Photosynthetic rates derived from satellite-based chlorophyll concentration
-
Behrenfeld MJ, Falkowski PG. (1997). Photosynthetic rates derived from satellite-based chlorophyll concentration. Limnol Oceanogr 42: 1-20.
-
(1997)
Limnol Oceanogr
, vol.42
, pp. 1-20
-
-
Behrenfeld, M.J.1
Falkowski, P.G.2
-
4
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, Nguyen LP et al. (2000). Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science (80-) 289: 1902-1906.
-
(2000)
Science (80-)
, vol.289
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
-
5
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Béjà O, Spudich EN, Spudich JL, Leclerc M, De Long EF. (2001). Proteorhodopsin phototrophy in the ocean. Nature 411: 786-789.
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Béjà, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
De Long, E.F.5
-
7
-
-
0003061304
-
Circadian rhythm in amino acid uptake by Synechococcus RF-1
-
Chen TH, Chen TL, Hung LM, Huang TC. (1991). Circadian rhythm in amino acid uptake by Synechococcus RF-1. Plant Physiol 97: 55-59.
-
(1991)
Plant Physiol
, vol.97
, pp. 55-59
-
-
Chen, T.H.1
Chen, T.L.2
Hung, L.M.3
Huang, T.C.4
-
8
-
-
3242806181
-
Light dependence of [ 3 H ] leucine incorporation in the oligotrophic North Pacific Ocean light dependence of [ 3 H ] leucine incorporation in the oligotrophic North Pacific Ocean
-
Church MJ, Ducklow HW, Karl DM. (2004). Light dependence of [ 3 H ] leucine incorporation in the oligotrophic North Pacific Ocean light dependence of [ 3 H ] leucine incorporation in the oligotrophic North Pacific Ocean. Appl Environ Microbiol 70: 4079-4087.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4079-4087
-
-
Church, M.J.1
Ducklow, H.W.2
Karl, D.M.3
-
9
-
-
84999234761
-
-
(Doctoral dissertation). Retrieved from DSpace MIT Thesis Database
-
Cubillos-Ruiz AF, Thompson JW, Becker JW, Chisholm SW, Shi Y, Van der Donk WA et al. (2015). Ecology and evolution of lanthipeptides in marine picocyanobacteria. (Doctoral dissertation). Retrieved from DSpace MIT Thesis Database.
-
(2015)
Ecology and Evolution of Lanthipeptides in Marine Picocyanobacteria
-
-
Cubillos-Ruiz, A.F.1
Thompson, J.W.2
Becker, J.W.3
Chisholm, S.W.4
Shi, Y.5
Van-Der-Donk, W.A.6
-
10
-
-
84948614453
-
Subsurface chlorophyll maximum layers: Enduring enigma or mystery solved?
-
Cullen JJ. (2015). Subsurface chlorophyll maximum layers: enduring enigma or mystery solved? Ann Rev Mar Sci 7: 207-239.
-
(2015)
Ann Rev Mar Sci
, vol.7
, pp. 207-239
-
-
Cullen, J.J.1
-
11
-
-
0031880429
-
Reconstructing ancestral character states: A critical reappraisal
-
Cunningham CW, Omland KE, Oakley TH. (1998). Reconstructing ancestral character states: a critical reappraisal. Trends Ecol Evol 13: 361-366.
-
(1998)
Trends Ecol Evol
, vol.13
, pp. 361-366
-
-
Cunningham, C.W.1
Omland, K.E.2
Oakley, T.H.3
-
12
-
-
0032169271
-
Conservation of gene order: A fingerprint of proteins that physically interact
-
Dandekar T, Snel B, Huynen M, Bork P. (1998). Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci 23: 324-328.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
13
-
-
14544304737
-
Role of the Escherichia coli glgX gene in glycogen metabolism
-
Dauvillée D, Kinderf IS, Li Z, Kosar-Hashemi B, Samuel MS, Rampling L et al. (2005). Role of the Escherichia coli glgX gene in glycogen metabolism. J Bacteriol 187: 1465-1473.
-
(2005)
J Bacteriol
, vol.187
, pp. 1465-1473
-
-
Dauvillée, D.1
Kinderf, I.S.2
Li, Z.3
Kosar-Hashemi, B.4
Samuel, M.S.5
Rampling, L.6
-
14
-
-
47149092637
-
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
-
Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik B et al. (2008). Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biol 9: R90.
-
(2008)
Genome Biol
, vol.9
, pp. R90
-
-
Dufresne, A.1
Ostrowski, M.2
Scanlan, D.J.3
Garczarek, L.4
Mazard, S.5
Palenik, B.6
-
15
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
16
-
-
84930040475
-
Photoheterotrophy of bacterioplankton is ubiquitous in the surface oligotrophic ocean
-
Evans C, Gómez-Pereira PR, Martin AP, Scanlan DJ, Zubkov MV. (2015). Photoheterotrophy of bacterioplankton is ubiquitous in the surface oligotrophic ocean. Prog Oceanogr 135: 139-145.
-
(2015)
Prog Oceanogr
, vol.135
, pp. 139-145
-
-
Evans, C.1
Gómez-Pereira, P.R.2
Martin, A.P.3
Scanlan, D.J.4
Zubkov, M.V.5
-
17
-
-
0032548141
-
Niche adaptation in ocean cyanobacteria
-
Ferris MJ, Palenik B. (1998). Niche adaptation in ocean cyanobacteria. Nature 396: 226-228.
-
(1998)
Nature
, vol.396
, pp. 226-228
-
-
Ferris, M.J.1
Palenik, B.2
-
18
-
-
84872931134
-
Global abundance of microbial rhodopsins
-
Finkel OM, Béjà O, Belkin S. (2013). Global abundance of microbial rhodopsins. ISME J 7: 448-451.
-
(2013)
ISME J
, vol.7
, pp. 448-451
-
-
Finkel, O.M.1
Béjà, O.2
Belkin, S.3
-
19
-
-
84879060146
-
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
-
Flombaum P, Gallegos JL, Gordillo RA, Rincón J, Zabala LL, Jiao N et al. (2013). Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proc Natl Acad Sci USA 110: 9824-9829.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 9824-9829
-
-
Flombaum, P.1
Gallegos, J.L.2
Gordillo, R.A.3
Rincón, J.4
Zabala, L.L.5
Jiao, N.6
-
20
-
-
55349114753
-
Glucose uptake and its effect on gene expression in Prochlorococcus
-
Gómez-Baena G, López-Lozano A, Gil-Martínez J, Lucena JM, Diez J, Candau P et al. (2008). Glucose uptake and its effect on gene expression in Prochlorococcus. PLoS One 3: e3416.
-
(2008)
PLoS One
, vol.3
, pp. e3416
-
-
Gómez-Baena, G.1
López-Lozano, A.2
Gil-Martínez, J.3
Lucena, J.M.4
Diez, J.5
Candau, P.6
-
21
-
-
84876502404
-
Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre
-
Gómez-Pereira PR, Hartmann M, Grob C, Tarran GA, Martin AP, Fuchs BM et al. (2013). Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. ISME J 7: 603-614.
-
(2013)
ISME J
, vol.7
, pp. 603-614
-
-
Gómez-Pereira, P.R.1
Hartmann, M.2
Grob, C.3
Tarran, G.A.4
Martin, A.P.5
Fuchs, B.M.6
-
22
-
-
0019190802
-
Protein D1: A glucoseinducible, pore-forming protein from the outer membrane of Pseudomonas aeruginosa
-
Hancock REW, Carey AM. (1980). Protein D1: a glucoseinducible, pore-forming protein from the outer membrane of Pseudomonas aeruginosa. FEMS Microbiol Lett 8: 105-109.
-
(1980)
FEMS Microbiol Lett
, vol.8
, pp. 105-109
-
-
Hancock, R.E.W.1
Carey, A.M.2
-
23
-
-
84859611702
-
Mixotrophic basis of Atlantic oligotrophic ecosystems
-
Hartmann M, Grob C, Tarran GA, Martin AP, Burkill PH, Scanlan DJ et al. (2012). Mixotrophic basis of Atlantic oligotrophic ecosystems. Proc Natl Acad Sci USA 109: 5756-5760.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 5756-5760
-
-
Hartmann, M.1
Grob, C.2
Tarran, G.A.3
Martin, A.P.4
Burkill, P.H.5
Scanlan, D.J.6
-
24
-
-
84883147815
-
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
-
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J et al. (2013). Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J 7: 1678-1695.
-
(2013)
ISME J
, vol.7
, pp. 1678-1695
-
-
Hingamp, P.1
Grimsley, N.2
Acinas, S.G.3
Clerissi, C.4
Subirana, L.5
Poulain, J.6
-
25
-
-
84855967843
-
Novel lineages of Prochlorococcus and Synechococcus in the global oceans
-
Huang S, Wilhelm SW, Harvey HR, Taylor K, Jiao N, Chen F. (2012). Novel lineages of Prochlorococcus and Synechococcus in the global oceans. ISME J 6: 285-297.
-
(2012)
ISME J
, vol.6
, pp. 285-297
-
-
Huang, S.1
Wilhelm, S.W.2
Harvey, H.R.3
Taylor, K.4
Jiao, N.5
Chen, F.6
-
26
-
-
84874530236
-
The Pacific Ocean Virome (POV): A marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology
-
Hurwitz BL, Sullivan MB. (2013). The Pacific Ocean Virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS One 8: e57355.
-
(2013)
PLoS One
, vol.8
, pp. e57355
-
-
Hurwitz, B.L.1
Sullivan, M.B.2
-
27
-
-
0033832615
-
Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences
-
Huynen M, Snel B, Lathe W, Bork P. (2000). Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res 10: 1204-1210.
-
(2000)
Genome Res
, vol.10
, pp. 1204-1210
-
-
Huynen, M.1
Snel, B.2
Lathe, W.3
Bork, P.4
-
29
-
-
35948971425
-
Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean
-
Jiao N, Zhang Y, Zeng Y, Hong N, Liu R, Chen F et al. (2007). Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean. Environ Microbiol 9: 3091-3099.
-
(2007)
Environ Microbiol
, vol.9
, pp. 3091-3099
-
-
Jiao, N.1
Zhang, Y.2
Zeng, Y.3
Hong, N.4
Liu, R.5
Chen, F.6
-
30
-
-
33645216333
-
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
-
Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EMS, Chisholm SW. (2006). Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science (80-) 311: 1737-1740.
-
(2006)
Science (80-)
, vol.311
, pp. 1737-1740
-
-
Johnson, Z.I.1
Zinser, E.R.2
Coe, A.3
McNulty, N.P.4
Woodward, E.M.S.5
Chisholm, S.W.6
-
31
-
-
0033794293
-
Mixotrophy in planktonic protists: An overview
-
Jones RI. (2000). Mixotrophy in planktonic protists: an overview. Freshw Biol 45: 219-226.
-
(2000)
Freshw Biol
, vol.45
, pp. 219-226
-
-
Jones, R.I.1
-
32
-
-
0018180463
-
Cyanobacteria grown under photoautotrophic, photoheterotrophic, and heterotrophic regimes: Sugar metabolism and carbon dioxide fixation
-
Joset-Espardellier F, Astier C, Evans EH, Carr NG. (1978). Cyanobacteria grown under photoautotrophic, photoheterotrophic, and heterotrophic regimes: sugar metabolism and carbon dioxide fixation. FEMS Microbiol Lett 4: 261-264.
-
(1978)
FEMS Microbiol Lett
, vol.4
, pp. 261-264
-
-
Joset-Espardellier, F.1
Astier, C.2
Evans, E.H.3
Carr, N.G.4
-
33
-
-
38749146444
-
Major bacterial contribution to the ocean reservoir of detrital organic carbon and nitrogen
-
Kaiser K, Benner R. (2008). Major bacterial contribution to the ocean reservoir of detrital organic carbon and nitrogen. Limnol Oceanogr 53: 99-112.
-
(2008)
Limnol Oceanogr
, vol.53
, pp. 99-112
-
-
Kaiser, K.1
Benner, R.2
-
35
-
-
80055082475
-
A holistic approach to marine eco-systems biology
-
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J et al. (2011). A holistic approach to marine eco-systems biology. PLoS Biol 9: e1001177.
-
(2011)
PLoS Biol
, vol.9
, pp. e1001177
-
-
Karsenti, E.1
Acinas, S.G.2
Bork, P.3
Bowler, C.4
De Vargas, C.5
Raes, J.6
-
36
-
-
0033588047
-
Utilization of dissolved protein and amino acids in the northern Sargasso Sea
-
Keil R, Kirchman D. (1999). Utilization of dissolved protein and amino acids in the northern Sargasso Sea. Aquat Microb Ecol 18: 293-300.
-
(1999)
Aquat Microb Ecol
, vol.18
, pp. 293-300
-
-
Keil, R.1
Kirchman, D.2
-
37
-
-
84862202790
-
ProPortal: A resource for integrated systems biology of Prochlorococcus and its phage
-
Kelly L, Huang KH, Ding H, Chisholm SW. (2012). ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Res 40: 632-640.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 632-640
-
-
Kelly, L.1
Huang, K.H.2
Ding, H.3
Chisholm, S.W.4
-
38
-
-
37749041470
-
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
-
Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S et al. (2007). Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet 3: e231.
-
(2007)
PLoS Genet
, vol.3
, pp. e231
-
-
Kettler, G.C.1
Martiny, A.C.2
Huang, K.3
Zucker, J.4
Coleman, M.L.5
Rodrigue, S.6
-
39
-
-
84907270824
-
Abundance, size, and activity of aerobic anoxygenic phototrophic bacteria in coastal waters of the West Antarctic Peninsula
-
Kirchman D, Stegman M, Nikrad M, Cottrell M. (2014). Abundance, size, and activity of aerobic anoxygenic phototrophic bacteria in coastal waters of the West Antarctic Peninsula. Aquat Microb Ecol 73: 41-49.
-
(2014)
Aquat Microb Ecol
, vol.73
, pp. 41-49
-
-
Kirchman, D.1
Stegman, M.2
Nikrad, M.3
Cottrell, M.4
-
40
-
-
0035967937
-
Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean
-
Kolber ZS, Plumley FG, Lang AS, Beatty JT, Blankenship RE, Vandover CL et al. (1999). Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292: 2492-2495.
-
(1999)
Science
, vol.292
, pp. 2492-2495
-
-
Kolber, Z.S.1
Plumley, F.G.2
Lang, A.S.3
Beatty, J.T.4
Blankenship, R.E.5
Vandover, C.L.6
-
41
-
-
84867634981
-
MOCAT: A metagenomics assembly and gene prediction toolkit
-
Kultima JR, Sunagawa S, Li JH, Chen WN, Chen H, Mende DR et al. (2012). MOCAT: a metagenomics assembly and gene prediction toolkit. PLoS One 7: e47656.
-
(2012)
PLoS One
, vol.7
, pp. e47656
-
-
Kultima, J.R.1
Sunagawa, S.2
Li, J.H.3
Chen, W.N.4
Chen, H.5
Mende, D.R.6
-
42
-
-
33745884688
-
Alanine dehydrogenase activity is required for adequate progression of phycobilisome degradation during nitrogen starvation in Synechococcus elongatus PCC 7942
-
Lahmi R, Sendersky E, Perelman A, Hagemann M, Forchhammer K, Schwarz R. (2006). Alanine dehydrogenase activity is required for adequate progression of phycobilisome degradation during nitrogen starvation in Synechococcus elongatus PCC 7942. J Bacteriol 188: 5258-5265.
-
(2006)
J Bacteriol
, vol.188
, pp. 5258-5265
-
-
Lahmi, R.1
Sendersky, E.2
Perelman, A.3
Hagemann, M.4
Forchhammer, K.5
Schwarz, R.6
-
43
-
-
78649717590
-
Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific
-
Lavin P, González B, Santibáñez JF, Scanlan DJ, Ulloa O. (2010). Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific. Environ Microbiol Rep 2: 728-738.
-
(2010)
Environ Microbiol Rep
, vol.2
, pp. 728-738
-
-
Lavin, P.1
González, B.2
Santibáñez, J.F.3
Scanlan, D.J.4
Ulloa, O.5
-
44
-
-
77953742146
-
Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria
-
Li B, Sher D, Kelly L, Shi Y, Huang K, Knerr PJ. (2010). Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria. Proc Natl Acad Sci USA 107: 10430-10435.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 10430-10435
-
-
Li, B.1
Sher, D.2
Kelly, L.3
Shi, Y.4
Huang, K.5
Knerr, P.J.6
-
45
-
-
84906944378
-
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
-
Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H et al. (2014). Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environ Microbiol 16: 2659-2671.
-
(2014)
Environ Microbiol
, vol.16
, pp. 2659-2671
-
-
Logares, R.1
Sunagawa, S.2
Salazar, G.3
Cornejo-Castillo, F.M.4
Ferrera, I.5
Sarmento, H.6
-
46
-
-
77957000882
-
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
-
Malmstrom RR, Coe A, Kettler GC, Martiny AC, Frias-Lopez J, Zinser ER et al. (2010). Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J 4: 1252-1264.
-
(2010)
ISME J
, vol.4
, pp. 1252-1264
-
-
Malmstrom, R.R.1
Coe, A.2
Kettler, G.C.3
Martiny, A.C.4
Frias-Lopez, J.5
Zinser, E.R.6
-
47
-
-
33747621641
-
Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
-
Martiny AC, Coleman ML, Chisholm SW. (2006). Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci USA 103: 12552-12557.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12552-12557
-
-
Martiny, A.C.1
Coleman, M.L.2
Chisholm, S.W.3
-
48
-
-
63849172535
-
Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus
-
Martiny AC, Tai APK, Veneziano D, Primeau F, Chisholm SW. (2009). Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus. Environ Microbiol 11: 823-832.
-
(2009)
Environ Microbiol
, vol.11
, pp. 823-832
-
-
Martiny, A.C.1
Tai, A.P.K.2
Veneziano, D.3
Primeau, F.4
Chisholm, S.W.5
-
49
-
-
64749106503
-
Diel rhythmicity in amino acid uptake by Prochlorococcus
-
Mary I, Garczarek L, Tarran GA, Kolowrat C, Terry MJ, Scanlan DJ et al. (2008). Diel rhythmicity in amino acid uptake by Prochlorococcus. Environ Microbiol 10: 2124-2131.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2124-2131
-
-
Mary, I.1
Garczarek, L.2
Tarran, G.A.3
Kolowrat, C.4
Terry, M.J.5
Scanlan, D.J.6
-
50
-
-
34548512226
-
Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic ocean
-
Michelou VK, Cottrell MT, Kirchman DL, David L. (2007). Light-stimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic ocean. Appl Environ Microbiol 73: 5539-5546.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5539-5546
-
-
Michelou, V.K.1
Cottrell, M.T.2
Kirchman, D.L.3
David, L.4
-
51
-
-
0032950018
-
Photophysiology of the marine Ecotypic cyanobacterium Prochlorococcus: Differences among cultured isolates
-
Moore LR, Chisholm SW. (1999). Photophysiology of the marine Ecotypic cyanobacterium Prochlorococcus: differences among cultured isolates. Limnol Oceanogr 44: 628-638.
-
(1999)
Limnol Oceanogr
, vol.44
, pp. 628-638
-
-
Moore, L.R.1
Chisholm, S.W.2
-
52
-
-
0032482462
-
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
-
Moore LR, Rocap G, Chisholm SW. (1998). Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393: 464-467.
-
(1998)
Nature
, vol.393
, pp. 464-467
-
-
Moore, L.R.1
Rocap, G.2
Chisholm, S.W.3
-
53
-
-
20144389217
-
Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: Evidence for viral control of phytoplankton
-
Mühling M, Fuller NJ, Millard A, Somerfield PJ, Marie D, Wilson WH et al. (2005). Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton. Environ Microbiol 7: 499-508.
-
(2005)
Environ Microbiol
, vol.7
, pp. 499-508
-
-
Mühling, M.1
Fuller, N.J.2
Millard, A.3
Somerfield, P.J.4
Marie, D.5
Wilson, W.H.6
-
54
-
-
33846544987
-
High resolution genetic diversity studies of marine Synechococcus isolates using rpoC1-based restriction fragment length polymorphism
-
Mühling M, Fuller NJ, Somerfield PJ, Post AF, Wilson WH, Scanlan DJ et al. (2006). High resolution genetic diversity studies of marine Synechococcus isolates using rpoC1-based restriction fragment length polymorphism. Aquat Microb Ecol 45: 263-275.
-
(2006)
Aquat Microb Ecol
, vol.45
, pp. 263-275
-
-
Mühling, M.1
Fuller, N.J.2
Somerfield, P.J.3
Post, A.F.4
Wilson, W.H.5
Scanlan, D.J.6
-
55
-
-
84878137576
-
Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean
-
Muñoz-Marín MDC, Luque I, Zubkov MV, Hill PG, Diez J, García-Fernández JM. (2013). Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean. Proc Natl Acad Sci USA 110: 8597-8602.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 8597-8602
-
-
Muñoz-Marín, M.D.C.1
Luque, I.2
Zubkov, M.V.3
Hill, P.G.4
Diez, J.5
García-Fernández, J.M.6
-
56
-
-
0025918999
-
Ecophysiological and trophic implications of light-stimulated amino acid utilization in marine picoplankton
-
Paerl HW. (1991). Ecophysiological and trophic implications of light-stimulated amino acid utilization in marine picoplankton. Appl Environ Microbiol 57: 473-479.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 473-479
-
-
Paerl, H.W.1
-
57
-
-
0028164043
-
Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis
-
Palenik B. (1994). Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis. Appl Environ Microbiol 60: 3212-3219.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 3212-3219
-
-
Palenik, B.1
-
58
-
-
84907227908
-
Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria
-
Palovaara J, Akram N, Baltar F, Bunse C, Forsberg J, Pedrós-Alió C et al. (2014). Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria. Proc Natl Acad Sci USA 111: 1-9.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 1-9
-
-
Palovaara, J.1
Akram, N.2
Baltar, F.3
Bunse, C.4
Forsberg, J.5
Pedrós-Alió, C.6
-
59
-
-
0033009854
-
Prochlorococcus, a marine photosynthetic prokaryote of global significance
-
Partensky F, Garczarek L, Hess WR, Vaulot D. (1999). Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63: 106-127.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 106-127
-
-
Partensky, F.1
Garczarek, L.2
Hess, W.R.3
Vaulot, D.4
-
61
-
-
0018955795
-
Growth of Thiobacillus novellus on mixed substrates (Mixotrophic growth)
-
Perez RC, Matin A. (1980). Growth of Thiobacillus novellus on mixed substrates (Mixotrophic growth). J Bacteriol 142: 633-638.
-
(1980)
J Bacteriol
, vol.142
, pp. 633-638
-
-
Perez, R.C.1
Matin, A.2
-
62
-
-
84930214841
-
Open science resources for the discovery and analysis of Tara Oceans data
-
Pesant S, Not F, Picheral M, Kandels-Lewis S, Le Bescot N, Gorsky G et al. (2015). Open science resources for the discovery and analysis of Tara Oceans data. Open Sci Resour Discov Anal Tara Ocean data Sci Data 2: 150023.
-
(2015)
Open Sci Resour Discov Anal Tara Ocean Data Sci Data
, vol.2
, pp. 150023
-
-
Pesant, S.1
Not, F.2
Picheral, M.3
Kandels-Lewis, S.4
Le Bescot, N.5
Gorsky, G.6
-
63
-
-
1942440433
-
The evolutionary development of the protein complement of Photosystem 2
-
Raymond J, Blankenship RE. (2004). The evolutionary development of the protein complement of Photosystem 2. Biochim Biophys Acta - Bioenerg 1655: 133-139.
-
(2004)
Biochim Biophys Acta - Bioenerg
, vol.1655
, pp. 133-139
-
-
Raymond, J.1
Blankenship, R.E.2
-
64
-
-
34250455512
-
Photoheterotrophy and chemoheterotrophy among unicellular blue-green algae
-
Rippka R. (1972). Photoheterotrophy and chemoheterotrophy among unicellular blue-green algae. Arch Mikrobiol 87: 93-98.
-
(1972)
Arch Mikrobiol
, vol.87
, pp. 93-98
-
-
Rippka, R.1
-
65
-
-
0042878464
-
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
-
Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA et al. (2003). Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424: 1042-1047.
-
(2003)
Nature
, vol.424
, pp. 1042-1047
-
-
Rocap, G.1
Larimer, F.W.2
Lamerdin, J.3
Malfatti, S.4
Chain, P.5
Ahlgren, N.A.6
-
66
-
-
9144230986
-
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes
-
Rogozin IB, Makarova KS, Wolf YI, Koonin EV. (2004). Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes. Brief Bioinform 5: 131-149.
-
(2004)
Brief Bioinform
, vol.5
, pp. 131-149
-
-
Rogozin, I.B.1
Makarova, K.S.2
Wolf, Y.I.3
Koonin, E.V.4
-
67
-
-
0001102676
-
Laboratory experiments with a mixotrophic chrysophyte and obligately phago-trophic and phototrophic competitors
-
Rothhaupt KO. (1996a). Laboratory experiments with a mixotrophic chrysophyte and obligately phago-trophic and phototrophic competitors. Ecology 77: 716-724.
-
(1996)
Ecology
, vol.77
, pp. 716-724
-
-
Rothhaupt, K.O.1
-
68
-
-
0000947659
-
Utilization of substitutable carbon and phosphorus sources by the mixotrophic chrysophyte Ochromonas SP
-
Rothhaupt KO. (1996b). Utilization of substitutable carbon and phosphorus sources by the mixotrophic chrysophyte Ochromonas SP. Ecology 77: 706-715.
-
(1996)
Ecology
, vol.77
, pp. 706-715
-
-
Rothhaupt, K.O.1
-
69
-
-
33947238287
-
The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S et al. (2007). The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
, pp. e77
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
-
70
-
-
23944505538
-
New insights into metabolic properties of marine bacteria encoding proteorhodopsins
-
Sabehi G, Loy A, Jung KH, Partha R, Spudich JL, Isaacson T et al. (2005). New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol 3: e273.
-
(2005)
PLoS Biol
, vol.3
, pp. e273
-
-
Sabehi, G.1
Loy, A.2
Jung, K.H.3
Partha, R.4
Spudich, J.L.5
Isaacson, T.6
-
71
-
-
33644873454
-
TCDB: The Transporter Classification Database for membrane transport protein analyses and information
-
Saier Jr MH, Tran CV, Barabote RD. (2006). TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res 34: D181-D186.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D181-D186
-
-
Saier, M.H.1
Tran, C.V.2
Barabote, R.D.3
-
72
-
-
0026344024
-
Purification of glucose-inducible outer membrane protein OprB of Pseudomonas putida and reconstitution of glucose-specific pores
-
Saravolac EG, Taylor NF, Benz R, Hancock REW. (1991). Purification of glucose-inducible outer membrane protein OprB of Pseudomonas putida and reconstitution of glucose-specific pores. J Bacteriol 173: 4970-4976.
-
(1991)
J Bacteriol
, vol.173
, pp. 4970-4976
-
-
Saravolac, E.G.1
Taylor, N.F.2
Benz, R.3
Hancock, R.E.W.4
-
73
-
-
0036883627
-
Interactive analysis and visualization of geoscience data with Ocean Data View
-
Schlitzer R. (2002). Interactive analysis and visualization of geoscience data with Ocean Data View. Comput Geosci 28: 1211-1218.
-
(2002)
Comput Geosci
, vol.28
, pp. 1211-1218
-
-
Schlitzer, R.1
-
74
-
-
32944478585
-
Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic
-
Sieracki ME, Gilg IC, Thier EC, Poulton NJ, Goericke R. (2006). Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnol Oceanogr 51: 38-46.
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 38-46
-
-
Sieracki, M.E.1
Gilg, I.C.2
Thier, E.C.3
Poulton, N.J.4
Goericke, R.5
-
75
-
-
84941969667
-
Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron
-
Sohm JA, Ahlgren NA, Thomson ZJ, Williams C, Moffett JW, Saito MA et al. (2015). Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron. ISME J 10: 1-13.
-
(2015)
ISME J
, vol.10
, pp. 1-13
-
-
Sohm, J.A.1
Ahlgren, N.A.2
Thomson, Z.J.3
Williams, C.4
Moffett, J.W.5
Saito, M.A.6
-
76
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. (2006). RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
77
-
-
84897045188
-
Strong genome-wide selection early in the evolution of Prochlorococcus Resulted in a reduced genome through the loss of a large number of small effect genes
-
Sun Z, Blanchard JL. (2014). Strong genome-wide selection early in the evolution of Prochlorococcus Resulted in a reduced genome through the loss of a large number of small effect genes. PLoS One 9: e88837.
-
(2014)
PLoS One
, vol.9
, pp. e88837
-
-
Sun, Z.1
Blanchard, J.L.2
-
78
-
-
84929992013
-
Structure and function of the global ocean microbiome
-
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G et al. (2015). Structure and function of the global ocean microbiome. Science (80-) 348: 1-10.
-
(2015)
Science (80-)
, vol.348
, pp. 1-10
-
-
Sunagawa, S.1
Coelho, L.P.2
Chaffron, S.3
Kultima, J.R.4
Labadie, K.5
Salazar, G.6
-
79
-
-
33947130237
-
Role of the GlgX protein in glycogen metabolism of the cyanobacterium, Synechococcus elongatus PCC 7942
-
Suzuki E, Umeda K, Nihei S, Moriya K, Ohkawa H, Fujiwara S et al. (2007). Role of the GlgX protein in glycogen metabolism of the cyanobacterium, Synechococcus elongatus PCC 7942. Biochim Biophys Acta 1770: 763-773.
-
(2007)
Biochim Biophys Acta
, vol.1770
, pp. 763-773
-
-
Suzuki, E.1
Umeda, K.2
Nihei, S.3
Moriya, K.4
Ohkawa, H.5
Fujiwara, S.6
-
81
-
-
84999261154
-
-
(Doctoral dissertation). Retrieved from DSpace MIT Thesis Database
-
Thompson JW. (2015). Prochlorococcus: life in light. (Doctoral dissertation). Retrieved from DSpace MIT Thesis Database.
-
(2015)
Prochlorococcus: Life in Light
-
-
Thompson, J.W.1
-
82
-
-
33750470072
-
Dimethylsulfoniopropionate uptake by marine phytoplankton
-
Vila-Costa M, Simó R, Harada H, Gasol JM, Slezak D, Kiene RP. (2006). Dimethylsulfoniopropionate uptake by marine phytoplankton. Science 314: 652-654.
-
(2006)
Science
, vol.314
, pp. 652-654
-
-
Vila-Costa, M.1
Simó, R.2
Harada, H.3
Gasol, J.M.4
Slezak, D.5
Kiene, R.P.6
-
83
-
-
0033012306
-
Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean
-
West NJ, Scanlan DJ. (1999). Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean. Appl Environ Microbiol 65: 2585-2591.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2585-2591
-
-
West, N.J.1
Scanlan, D.J.2
-
84
-
-
0034916894
-
Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
-
West NJ, Schonhuber WA, Fuller NJ, Amann RI, Rippka R, Post AF et al. (2001). Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology 147: 1731-1744.
-
(2001)
Microbiology
, vol.147
, pp. 1731-1744
-
-
West, N.J.1
Schonhuber, W.A.2
Fuller, N.J.3
Amann, R.I.4
Rippka, R.5
Post, A.F.6
-
85
-
-
79955877212
-
RAPSearch: A fast protein similarity search tool for short reads
-
Ye Y, Choi J-H, Tang H. (2011). RAPSearch: a fast protein similarity search tool for short reads. BMC Bioinformatics 12: 159.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 159
-
-
Ye, Y.1
Choi, J.-H.2
Tang, H.3
-
86
-
-
80055092787
-
A semi-quantitative, syntenybased method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes
-
Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP et al. (2011). A semi-quantitative, syntenybased method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. PLoS Comput Biol 7: e1002230.
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002230
-
-
Yelton, A.P.1
Thomas, B.C.2
Simmons, S.L.3
Wilmes, P.4
Zemla, A.5
Thelen, M.P.6
-
87
-
-
33947235074
-
The Sorcerer II global ocean sampling expedition: Expanding the universe of protein families
-
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K et al. (2007). The Sorcerer II global ocean sampling expedition: expanding the universe of protein families. PLoS Biol 5: 0432-0466.
-
(2007)
PLoS Biol
, vol.5
, pp. 0432-0466
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
-
88
-
-
33644868116
-
Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method
-
Zinser ER, Coe A, Johnson ZI, Martiny AC, Fuller NJ, Scanlan DJ et al. (2006). Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl Environ Microbiol 72: 723-732.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 723-732
-
-
Zinser, E.R.1
Coe, A.2
Johnson, Z.I.3
Martiny, A.C.4
Fuller, N.J.5
Scanlan, D.J.6
-
89
-
-
35349008554
-
Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean
-
Zinser ER, Johnson ZI, Coe A, Karaca E, Veneziano D, Chisholm SW. (2007). Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean. Limnol Oceanogr 52: 2205-2220.
-
(2007)
Limnol Oceanogr
, vol.52
, pp. 2205-2220
-
-
Zinser, E.R.1
Johnson, Z.I.2
Coe, A.3
Karaca, E.4
Veneziano, D.5
Chisholm, S.W.6
-
90
-
-
0037313141
-
High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters
-
Zubkov MV, Fuchs BM, Tarran GA, Burkill PH, Amann R. (2003). High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters. Appl Environ Microbiol 69: 1299-1304.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1299-1304
-
-
Zubkov, M.V.1
Fuchs, B.M.2
Tarran, G.A.3
Burkill, P.H.4
Amann, R.5
-
91
-
-
8144219976
-
Depth related amino acid uptake by Prochlorococcus cyanobacteria in the Southern Atlantic tropical gyre
-
Zubkov MV, Tarran GA, Fuchs BM. (2004). Depth related amino acid uptake by Prochlorococcus cyanobacteria in the Southern Atlantic tropical gyre. FEMS Microbiol Ecol 50: 153-161.
-
(2004)
FEMS Microbiol Ecol
, vol.50
, pp. 153-161
-
-
Zubkov, M.V.1
Tarran, G.A.2
Fuchs, B.M.3
-
92
-
-
68849120882
-
Photoheterotrophy in marine prokaryotes
-
Zubkov MV. (2009). Photoheterotrophy in marine prokaryotes. J Plankton Res 31: 933-938.
-
(2009)
J Plankton Res
, vol.31
, pp. 933-938
-
-
Zubkov, M.V.1
-
93
-
-
41149164685
-
Differential microbial uptake of dissolved amino acids and amino sugars in surface waters of the Atlantic Ocean
-
Zubkov MV, Tarran GA, Mary I, Fuchs BM. (2008). Differential microbial uptake of dissolved amino acids and amino sugars in surface waters of the Atlantic Ocean. J Plankton Res 30: 211-220.
-
(2008)
J Plankton Res
, vol.30
, pp. 211-220
-
-
Zubkov, M.V.1
Tarran, G.A.2
Mary, I.3
Fuchs, B.M.4
-
94
-
-
38149140067
-
Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes
-
Zwirglmaier K, Jardillier L, Ostrowski M, Mazard S, Garczarek L, Vaulot D et al. (2008). Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environ Microbiol 10: 147-161.
-
(2008)
Environ Microbiol
, vol.10
, pp. 147-161
-
-
Zwirglmaier, K.1
Jardillier, L.2
Ostrowski, M.3
Mazard, S.4
Garczarek, L.5
Vaulot, D.6
|