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Volumn 45, Issue 3, 2006, Pages 263-275

High resolution genetic diversity studies of marine Synechococcus isolates using rpoC1-based restriction fragment length polymorphism

Author keywords

Genetic diversity; Marine; Population dynamics; rpoC1; Synechococcus spp.

Indexed keywords

CYANOBIUM; SYNECHOCOCCUS;

EID: 33846544987     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame045263     Document Type: Article
Times cited : (40)

References (33)
  • 1
    • 0030875847 scopus 로고    scopus 로고
    • Thermodynamics and NMR of internal G·T mismatches in DNA
    • Allawi HT, SantaLucia J Jr (1997) Thermodynamics and NMR of internal G·T mismatches in DNA. Biochemistry 36:10581-10594
    • (1997) Biochemistry , vol.36 , pp. 10581-10594
    • Allawi, H.T.1    SantaLucia Jr, J.2
  • 2
    • 4243133585 scopus 로고    scopus 로고
    • Phylogenetic diversity of Synechococcus in the Chesapeake Bay revealed by ribulose-1,5-bisphosphate carboxylase-oxygenase (RuBisCO) large subunit gene (rbcL) sequences
    • Chen F, Wang K, Kan J, Bachoon DS, Lu J, Lau S, Campbell L (2004) Phylogenetic diversity of Synechococcus in the Chesapeake Bay revealed by ribulose-1,5-bisphosphate carboxylase-oxygenase (RuBisCO) large subunit gene (rbcL) sequences. Aquat Microb Ecol 36:153-164
    • (2004) Aquat Microb Ecol , vol.36 , pp. 153-164
    • Chen, F.1    Wang, K.2    Kan, J.3    Bachoon, D.S.4    Lu, J.5    Lau, S.6    Campbell, L.7
  • 3
    • 33644951496 scopus 로고    scopus 로고
    • Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences
    • Chen F, Wang K, Kan J, Suzuki MT, Wommack KE (2006) Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences. Appl Environ Microbiol 72:2239-2243
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2239-2243
    • Chen, F.1    Wang, K.2    Kan, J.3    Suzuki, M.T.4    Wommack, K.E.5
  • 4
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18:117-143
    • (1993) Aust J Ecol , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 6
    • 0037259888 scopus 로고    scopus 로고
    • Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis
    • Ernst A, Becker S, Wollenzien UIA, Postius C (2003) Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis. Microbiology Reading (UK) 149:217-228
    • (2003) Microbiology Reading (UK) , vol.149 , pp. 217-228
    • Ernst, A.1    Becker, S.2    Wollenzien, U.I.A.3    Postius, C.4
  • 7
    • 0032548141 scopus 로고    scopus 로고
    • Niche adaptation in ocean cyanobacteria
    • Ferris MJ, Palenik B (1998) Niche adaptation in ocean cyanobacteria. Nature 396:226-228
    • (1998) Nature , vol.396 , pp. 226-228
    • Ferris, M.J.1    Palenik, B.2
  • 8
    • 0037545904 scopus 로고    scopus 로고
    • Clade-specific 16S rDNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea
    • Fuller NJ, Marie D, Partensky F, Vaulot D, Post AF, Scanlan DJ (2003) Clade-specific 16S rDNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea. Appl Environ Microbiol 69:2430-2443
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2430-2443
    • Fuller, N.J.1    Marie, D.2    Partensky, F.3    Vaulot, D.4    Post, A.F.5    Scanlan, D.J.6
  • 9
    • 13444311048 scopus 로고    scopus 로고
    • Dynamics of community structure and phosphate status of picocyanobacterial populations in the Gulf of Aqaba, Red Sea
    • Fuller NJ, West NJ, Marie D, Yallop M, Rivlin T, Post AF, Scanlan DJ (2005) Dynamics of community structure and phosphate status of picocyanobacterial populations in the Gulf of Aqaba, Red Sea. Limnol Oceanogr 50:363-375
    • (2005) Limnol Oceanogr , vol.50 , pp. 363-375
    • Fuller, N.J.1    West, N.J.2    Marie, D.3    Yallop, M.4    Rivlin, T.5    Post, A.F.6    Scanlan, D.J.7
  • 10
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of the population parameters
    • Good IJ (1953) The population frequencies of species and the estimation of the population parameters. Biometrika 40:237-264
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 11
    • 0002348293 scopus 로고
    • The number of new species and the increase of population coverage when a sample is increased
    • Good IJ, Toulmin G (1956) The number of new species and the increase of population coverage when a sample is increased. Biometrika 43:45-63
    • (1956) Biometrika , vol.43 , pp. 45-63
    • Good, I.J.1    Toulmin, G.2
  • 12
    • 0029542479 scopus 로고
    • Seasonal occurrence of picocyanobacteria in the Greenland Sea and central Arctic Ocean
    • Gradinger R, Lenz J (1995) Seasonal occurrence of picocyanobacteria in the Greenland Sea and central Arctic Ocean. Polar Biol 15:447-452
    • (1995) Polar Biol , vol.15 , pp. 447-452
    • Gradinger, R.1    Lenz, J.2
  • 13
    • 28044433875 scopus 로고    scopus 로고
    • Expression of the nitrogen stress response gene ntcA reveals nitrogen-sufficient Synechococcus populations in the oligotrophic northern Red Sea
    • Lindell D, Penno S, Al-Qutob M, David E, Rivlin T, Lazar B, Post AF (2005) Expression of the nitrogen stress response gene ntcA reveals nitrogen-sufficient Synechococcus populations in the oligotrophic northern Red Sea. Limnol Oceanogr 50:1932-1944
    • (2005) Limnol Oceanogr , vol.50 , pp. 1932-1944
    • Lindell, D.1    Penno, S.2    Al-Qutob, M.3    David, E.4    Rivlin, T.5    Lazar, B.6    Post, A.F.7
  • 14
    • 2542523843 scopus 로고    scopus 로고
    • Ludwig W, Strunk O, Westram R, Richter L and 28 others (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363-1371
    • Ludwig W, Strunk O, Westram R, Richter L and 28 others (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363-1371
  • 15
    • 4944251635 scopus 로고    scopus 로고
    • Natural community structure of cyanobacteria in the South China Sea as revealed by rpoC1 gene sequence analysis
    • Ma Y, Jiao NZ, Zeng YH (2004) Natural community structure of cyanobacteria in the South China Sea as revealed by rpoC1 gene sequence analysis. Lett Appl Microbiol 39:353-358
    • (2004) Lett Appl Microbiol , vol.39 , pp. 353-358
    • Ma, Y.1    Jiao, N.Z.2    Zeng, Y.H.3
  • 16
    • 0037385295 scopus 로고    scopus 로고
    • Phages of the marine picophytoplankton
    • Mann NH (2003) Phages of the marine picophytoplankton. FEMS Microbiol Rev 27:17-34
    • (2003) FEMS Microbiol Rev , vol.27 , pp. 17-34
    • Mann, N.H.1
  • 17
    • 20144389217 scopus 로고    scopus 로고
    • Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: Evidence for viral control of phytoplankton
    • Mühling M, Fuller NJ, Millard A, Somerfield PJ and 6 others (2005) Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton. Environ Microbiol 7:499-508
    • (2005) Environ Microbiol , vol.7 , pp. 499-508
    • Mühling, M.1    Fuller, N.J.2    Millard, A.3    Somerfield, P.J.4
  • 18
    • 0028164043 scopus 로고
    • Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis
    • Palenik B (1994) Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis. Appl Environ Microbiol 60:3212-3219
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3212-3219
    • Palenik, B.1
  • 19
    • 0030210532 scopus 로고    scopus 로고
    • Vertical structure of picophytoplankton at different trophic sites of the tropical northeastern Atlantic Ocean
    • Partensky F, Blanchot J, Lantoine F, Neveux J, Marie D (1996) Vertical structure of picophytoplankton at different trophic sites of the tropical northeastern Atlantic Ocean. Deep-Sea Res I 43:1191-1213
    • (1996) Deep-Sea Res I , vol.43 , pp. 1191-1213
    • Partensky, F.1    Blanchot, J.2    Lantoine, F.3    Neveux, J.4    Marie, D.5
  • 20
    • 0033009854 scopus 로고    scopus 로고
    • Prochlorococcus, a marine photosynthetic prokaryote of global significance
    • Partensky F, Hess WR, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63:106-127
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 106-127
    • Partensky, F.1    Hess, W.R.2    Vaulot, D.3
  • 21
    • 33745163916 scopus 로고    scopus 로고
    • Diversity of Synechococcus and Prochlorococcus populations determined from DNA sequences of the N-regulation gene ntcA
    • Penno S, Lindell D, Post AF (2006) Diversity of Synechococcus and Prochlorococcus populations determined from DNA sequences of the N-regulation gene ntcA. Environ Microbiol 8:1200-1211
    • (2006) Environ Microbiol , vol.8 , pp. 1200-1211
    • Penno, S.1    Lindell, D.2    Post, A.F.3
  • 22
    • 33846546874 scopus 로고    scopus 로고
    • Rippka R, Castenholz RW, Herdman M (2001) Form-genus IV. Cyanobium Rippka and Cohen-Bazire 1983. In: Boone DR, Castenmholz RW, Garrity GM (eds) Bergey's manual of systematic bacteriology: the Archaea and the deeply branching and phototrophic bacteria, 1. Springer-Verlag, Berlin, p 498-499
    • Rippka R, Castenholz RW, Herdman M (2001) Form-genus IV. Cyanobium Rippka and Cohen-Bazire 1983. In: Boone DR, Castenmholz RW, Garrity GM (eds) Bergey's manual of systematic bacteriology: the Archaea and the deeply branching and phototrophic bacteria, Vol 1. Springer-Verlag, Berlin, p 498-499
  • 23
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68:1180-1191
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 24
    • 0036098886 scopus 로고    scopus 로고
    • Molecular ecology of the marine cyanobacterial genera Prochlorococcus and Synechococcus
    • Scanlan DJ, West NJ (2002) Molecular ecology of the marine cyanobacterial genera Prochlorococcus and Synechococcus. FEMS Microbiol Ecol 40:1-12
    • (2002) FEMS Microbiol Ecol , vol.40 , pp. 1-12
    • Scanlan, D.J.1    West, N.J.2
  • 25
    • 0037163179 scopus 로고    scopus 로고
    • Grazing during early spring in the Gulf of Aqaba and the northern Red Sea
    • Sommer U, Berninger UG, Böttger-Schnack R, Cornils A and 8 others (2002) Grazing during early spring in the Gulf of Aqaba and the northern Red Sea. Mar Ecol Prog Ser 239:251-261
    • (2002) Mar Ecol Prog Ser , vol.239 , pp. 251-261
    • Sommer, U.1    Berninger, U.G.2    Böttger-Schnack, R.3    Cornils, A.4
  • 26
    • 0027930755 scopus 로고
    • Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp
    • Suttle CA, Chan AM (1994) Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp. Appl Environ Microbiol 60:3167-3174
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3167-3174
    • Suttle, C.A.1    Chan, A.M.2
  • 27
    • 0030667721 scopus 로고    scopus 로고
    • Synechococcus diversity in the Californian Current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains
    • Toledo G, Palenik B (1997) Synechococcus diversity in the Californian Current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains. Appl Environ Microbiol 63:4298-4303
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4298-4303
    • Toledo, G.1    Palenik, B.2
  • 28
    • 0032710402 scopus 로고    scopus 로고
    • Swimming marine Synechococcus strains with widely different photosynthetic pigment ratios form a monophyletic group
    • Toledo G, Palenik B, Brahamsha B (1999) Swimming marine Synechococcus strains with widely different photosynthetic pigment ratios form a monophyletic group. Appl Environ Microbiol 65:5247-5251
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5247-5251
    • Toledo, G.1    Palenik, B.2    Brahamsha, B.3
  • 29
  • 30
    • 11144354360 scopus 로고    scopus 로고
    • Venter JC, Remington K, Heidelberg JF, Halpern AL and 19 others (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
    • Venter JC, Remington K, Heidelberg JF, Halpern AL and 19 others (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
  • 31
    • 0027329223 scopus 로고
    • Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater
    • Waterbury JB, Valois FW (1993) Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater. Appl Environ Microbiol 59:3393-3399
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3393-3399
    • Waterbury, J.B.1    Valois, F.W.2
  • 32
    • 0001527570 scopus 로고
    • Chemotaxis towards nitrogenous compounds by swimming strains of marine Synechococcus spp
    • Willey JM, Waterbury JB (1989) Chemotaxis towards nitrogenous compounds by swimming strains of marine Synechococcus spp. Appl Environ Microbiol 55:1888-1894
    • (1989) Appl Environ Microbiol , vol.55 , pp. 1888-1894
    • Willey, J.M.1    Waterbury, J.B.2
  • 33
    • 0345517255 scopus 로고    scopus 로고
    • Fluorescence-based characterization of phycoerythrin-containing cyanobacterial communities in the Arabian Sea during the Northeast and early Southwest Monsoon (1994-1995)
    • Wood AM, Lipsen M, Coble P (1999) Fluorescence-based characterization of phycoerythrin-containing cyanobacterial communities in the Arabian Sea during the Northeast and early Southwest Monsoon (1994-1995). Deep-Sea Res I 46:1769-1790
    • (1999) Deep-Sea Res I , vol.46 , pp. 1769-1790
    • Wood, A.M.1    Lipsen, M.2    Coble, P.3


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