메뉴 건너뛰기




Volumn 3, Issue 8, 2005, Pages

New insights into metabolic properties of marine bacteria encoding proteorhodopsins

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; ISOPROTEIN; OXIDIZING AGENT; PROTEORHODOPSIN; SULFITE REDUCTASE; SULFUR DERIVATIVE; UNCLASSIFIED DRUG; CAROTENOID; OXIDOREDUCTASE; RHODOPSIN; SEA WATER;

EID: 23944505538     PISSN: 15449173     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pbio.0030273     Document Type: Article
Times cited : (198)

References (42)
  • 1
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, et al. (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289: 1902-1906.
    • (2000) Science , vol.289 , pp. 1902-1906
    • Béjà, O.1    Aravind, L.2    Koonin, E.V.3    Suzuki, M.T.4    Hadd, A.5
  • 3
    • 0036840901 scopus 로고    scopus 로고
    • Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton
    • Pernthaler A, Pernthaler J, Schattenhofer M, Amann R (2002) Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton. Appl Environ Microbiol 68: 5728-5736.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5728-5736
    • Pernthaler, A.1    Pernthaler, J.2    Schattenhofer, M.3    Amann, R.4
  • 4
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68: 3094-3101.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 5
    • 0038391981 scopus 로고    scopus 로고
    • Diversification and spectral tuning in marine proteorhodopsins
    • Man D, Wang W, Sabehi G, Aravind L, Post AF, et al. (2003) Diversification and spectral tuning in marine proteorhodopsins. EMBO J 22: 1725-1731.
    • (2003) EMBO J , vol.22 , pp. 1725-1731
    • Man, D.1    Wang, W.2    Sabehi, G.3    Aravind, L.4    Post, A.F.5
  • 10
    • 0034554741 scopus 로고    scopus 로고
    • Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
    • Béjà O, Suzuki MT, Koonin EV, Aravind L, Hadd A, et al. (2000) Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ Microbiol 2: 516-529.
    • (2000) Environ Microbiol , vol.2 , pp. 516-529
    • Béjà, O.1    Suzuki, M.T.2    Koonin, E.V.3    Aravind, L.4    Hadd, A.5
  • 11
    • 16544380308 scopus 로고    scopus 로고
    • Proteomic analysis of novel marine bacteria using MALDI and ESI mass spectrometry
    • Stapels MD, Cho JC, Giovannoni SJ, Barofsky DF (2004) Proteomic analysis of novel marine bacteria using MALDI and ESI mass spectrometry. J Biomol Tech 15: 191-198.
    • (2004) J Biomol Tech , vol.15 , pp. 191-198
    • Stapels, M.D.1    Cho, J.C.2    Giovannoni, S.J.3    Barofsky, D.F.4
  • 12
  • 13
    • 0036427776 scopus 로고    scopus 로고
    • Community structure and function in prokaryotic marine plankton
    • Fuhrman JA (2002) Community structure and function in prokaryotic marine plankton. Antonie van Leeuwenhoek 81: 521-527.
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 521-527
    • Fuhrman, J.A.1
  • 14
  • 15
    • 0141817991 scopus 로고    scopus 로고
    • Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin
    • Wang WW, Sineshchekov OA, Spudich EN, Spudich JL (2003) Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin. J Biol Chem 278: 33985-33991.
    • (2003) J Biol Chem , vol.278 , pp. 33985-33991
    • Wang, W.W.1    Sineshchekov, O.A.2    Spudich, E.N.3    Spudich, J.L.4
  • 16
    • 0030821694 scopus 로고    scopus 로고
    • Towards the phylogeny of APS reductases and sirohaem sulfite reductases in sulfate-reducing and sulfur-oxidizing prokaryotes
    • Hipp WM, Pott AS, Thum-Schmitz N, Faath I, Dahl C, et al. (1997) Towards the phylogeny of APS reductases and sirohaem sulfite reductases in sulfate-reducing and sulfur-oxidizing prokaryotes. Microbiology 143: 2891-2902.
    • (1997) Microbiology , vol.143 , pp. 2891-2902
    • Hipp, W.M.1    Pott, A.S.2    Thum-Schmitz, N.3    Faath, I.4    Dahl, C.5
  • 17
    • 0344117773 scopus 로고    scopus 로고
    • Genes involved in hydrogen and sulfur metabolism in phototrophic sulfur bacteria
    • Dahl C, Rakhely G, Pott-Sperling AS, Fodor B, Takacs M, et al. (1999) Genes involved in hydrogen and sulfur metabolism in phototrophic sulfur bacteria. FEMS Microbiol Lett 180: 317-324.
    • (1999) FEMS Microbiol Lett , vol.180 , pp. 317-324
    • Dahl, C.1    Rakhely, G.2    Pott-Sperling, A.S.3    Fodor, B.4    Takacs, M.5
  • 18
    • 0031855745 scopus 로고    scopus 로고
    • Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur
    • Pott AS, Dahl C (1998) Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur. Microbiology 144: 1881.
    • (1998) Microbiology , vol.144 , pp. 1881
    • Pott, A.S.1    Dahl, C.2
  • 19
    • 0032881742 scopus 로고    scopus 로고
    • Aerobic turnover of dimethyl sulfide by the anoxygenic phototrophic bacterium Thiocapsa roseopersicina
    • Jonkers HM, Jansen M, Van der Maarel MJEC, Van Gemerden H (1999) Aerobic turnover of dimethyl sulfide by the anoxygenic phototrophic bacterium Thiocapsa roseopersicina. Arch Microbiol 172: 150-156.
    • (1999) Arch Microbiol , vol.172 , pp. 150-156
    • Jonkers, H.M.1    Jansen, M.2    Van Der Maarel, M.J.E.C.3    Van Gemerden, H.4
  • 20
    • 0027489490 scopus 로고
    • A new mechanism for the aerobic catabolism of dimethyl sulfide
    • Visscher PT, Taylor BF (1993) A new mechanism for the aerobic catabolism of dimethyl sulfide. Appl Env Microbiol 59: 3784-3789.
    • (1993) Appl Env Microbiol , vol.59 , pp. 3784-3789
    • Visscher, P.T.1    Taylor, B.F.2
  • 21
    • 0033588040 scopus 로고    scopus 로고
    • Take the shuttle - From marine algae to atmospheric chemistry
    • Liss P (1999) Take the shuttle - from marine algae to atmospheric chemistry. Science 285: 1217-1218.
    • (1999) Science , vol.285 , pp. 1217-1218
    • Liss, P.1
  • 23
    • 0023525334 scopus 로고
    • Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate
    • Charlson RJ, Lovelock JE, Andreae MO, Warren SG (1987) Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate. Nature 326: 655-661.
    • (1987) Nature , vol.326 , pp. 655-661
    • Charlson, R.J.1    Lovelock, J.E.2    Andreae, M.O.3    Warren, S.G.4
  • 24
    • 3242797571 scopus 로고    scopus 로고
    • Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
    • Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL (2004) Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean. Appl Env Microbiol 70: 4129-4135.
    • (2004) Appl Env Microbiol , vol.70 , pp. 4129-4135
    • Malmstrom, R.R.1    Kiene, R.P.2    Cottrell, M.T.3    Kirchman, D.L.4
  • 25
    • 0036952070 scopus 로고    scopus 로고
    • Dimethylsulfoniopropionate: Its sources, role in the marine food web, and biological degradation to dimethylsulfide
    • Yoch DC (2002) Dimethylsulfoniopropionate: Its sources, role in the marine food web, and biological degradation to dimethylsulfide. Appl Env Microbiol 68: 5804-5815.
    • (2002) Appl Env Microbiol , vol.68 , pp. 5804-5815
    • Yoch, D.C.1
  • 26
    • 0028817748 scopus 로고
    • Structure and functional analysis of a marine bacterial carotenoid biosynthesis gene cluster and astaxanthin biosynthetic pathway proposed at the gene level
    • Misawa N, Satomi Y, Kondo K, Yokoyama A, Kajiwara S, et al. (1995) Structure and functional analysis of a marine bacterial carotenoid biosynthesis gene cluster and astaxanthin biosynthetic pathway proposed at the gene level. J Bacteriol 177: 6575-6584.
    • (1995) J Bacteriol , vol.177 , pp. 6575-6584
    • Misawa, N.1    Satomi, Y.2    Kondo, K.3    Yokoyama, A.4    Kajiwara, S.5
  • 27
    • 0035937192 scopus 로고    scopus 로고
    • brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in halobacterium salinarum
    • Peck RF, Echavarri-Erasun C, Johnson EA, Ng WV, Kennedy SP, et al. (2001) brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in halobacterium salinarum. J Biol Chem 276: 5739-5744.
    • (2001) J Biol Chem , vol.276 , pp. 5739-5744
    • Peck, R.F.1    Echavarri-Erasun, C.2    Johnson, E.A.3    Ng, W.V.4    Kennedy, S.P.5
  • 28
    • 0034697178 scopus 로고    scopus 로고
    • Filling the gap in vitamin A research. Molecular identification of an enzyme cleaving beta-carotene to retinal
    • von Lintig J, Vogt K (2000) Filling the gap in vitamin A research. Molecular identification of an enzyme cleaving beta-carotene to retinal. J Biol Chem 275: 11915-11920.
    • (2000) J Biol Chem , vol.275 , pp. 11915-11920
    • Von Lintig, J.1    Vogt, K.2
  • 29
    • 14544289081 scopus 로고    scopus 로고
    • Retinal biosynthesis in Eubacteria: In vitro characterization of a novel carotenoid oxygenase from Synechocystis sp. PCC 6803
    • Ruch S, Beyer P, Ernst H, Al Babili S (2005) Retinal biosynthesis in Eubacteria: In vitro characterization of a novel carotenoid oxygenase from Synechocystis sp. PCC 6803. Mol Microbiol 55: 1015-1024.
    • (2005) Mol Microbiol , vol.55 , pp. 1015-1024
    • Ruch, S.1    Beyer, P.2    Ernst, H.3    Al Babili, S.4
  • 30
    • 0030970352 scopus 로고    scopus 로고
    • Expression of an exogenous isopentenyl diphosphate isomerase gene enhances isoprenoid biosynthesis in Escherichia coli
    • Kajiwara S, Fraser PD, Kondo K, Misawa N (1997) Expression of an exogenous isopentenyl diphosphate isomerase gene enhances isoprenoid biosynthesis in Escherichia coli. Biochem J 324: 421-426.
    • (1997) Biochem J , vol.324 , pp. 421-426
    • Kajiwara, S.1    Fraser, P.D.2    Kondo, K.3    Misawa, N.4
  • 31
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
    • Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF (1996) Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 178: 591-599.
    • (1996) J Bacteriol , vol.178 , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    DeLong, E.F.5
  • 33
    • 14844355911 scopus 로고    scopus 로고
    • Analysis in vitro of the enzyme CRTISO establishes a poly-cis carotenoid biosynthesis pathway in plants
    • Isaacson T, Ohad I, Beyer P, Hirschberg J (2004) Analysis in vitro of the enzyme CRTISO establishes a poly-cis carotenoid biosynthesis pathway in plants. Plant Physiol 136: 4246-4255.
    • (2004) Plant Physiol , vol.136 , pp. 4246-4255
    • Isaacson, T.1    Ohad, I.2    Beyer, P.3    Hirschberg, J.4
  • 34
    • 0028965765 scopus 로고
    • Cloning and expression in Escherichia coli of the gene encoding b-C-4-oxygenase, that converts β-carotene to the ketocarotenoid canthaxanthin in Haematococcus pluvialis
    • Lotan T, Hirschberg J (1995) Cloning and expression in Escherichia coli of the gene encoding b-C-4-oxygenase, that converts β-carotene to the ketocarotenoid canthaxanthin in Haematococcus pluvialis. FEBS Lett 364: 125-128.
    • (1995) FEBS Lett , vol.364 , pp. 125-128
    • Lotan, T.1    Hirschberg, J.2
  • 35
    • 0035225012 scopus 로고    scopus 로고
    • Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins
    • research/0033.0033
    • Makarova KS, Ponomarev VA, Koonin EV (2001) Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol 2: research/0033.0033.
    • (2001) Genome Biol , vol.2
    • Makarova, K.S.1    Ponomarev, V.A.2    Koonin, E.V.3
  • 36
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALx windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTALx windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 39
    • 0031784239 scopus 로고    scopus 로고
    • The transducer protein HtrII modulates the lifetimes of sensory rhodopsin II photointermediates
    • Sasaki J, Spudich JL (1998) The transducer protein HtrII modulates the lifetimes of sensory rhodopsin II photointermediates. Biophys J 75: 2435-2440.
    • (1998) Biophys J , vol.75 , pp. 2435-2440
    • Sasaki, J.1    Spudich, J.L.2
  • 40
    • 0032463021 scopus 로고    scopus 로고
    • Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
    • Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA (1998) Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180: 2975-2982.
    • (1998) J Bacteriol , vol.180 , pp. 2975-2982
    • Wagner, M.1    Roger, A.J.2    Flax, J.L.3    Brusseau, G.A.4    Stahl, D.A.5
  • 41
    • 0034810541 scopus 로고    scopus 로고
    • Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes
    • Klein M, Friedrich M, Roger AJ, Hugenholtz P, Fishbain S, et al. (2001) Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes. J Bacteriol 183: 6028-6035.
    • (2001) J Bacteriol , vol.183 , pp. 6028-6035
    • Klein, M.1    Friedrich, M.2    Roger, A.J.3    Hugenholtz, P.4    Fishbain, S.5
  • 42
    • 14644402378 scopus 로고    scopus 로고
    • Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited
    • Zverlov V, Klein M, Lucker S, Friedrich MW, Kellermann J, et al. (2005) Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J Bacteriol 187: 2203-2208.
    • (2005) J Bacteriol , vol.187 , pp. 2203-2208
    • Zverlov, V.1    Klein, M.2    Lucker, S.3    Friedrich, M.W.4    Kellermann, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.