-
1
-
-
77956873456
-
Advances in understanding tissue regenerative capacity and mechanisms in animals
-
Poss, K. D. Advances in understanding tissue regenerative capacity and mechanisms in animals. Nature Rev. Genet. 11, 710-722 (2010).
-
(2010)
Nature Rev. Genet.
, vol.11
, pp. 710-722
-
-
Poss, K.D.1
-
3
-
-
38349023585
-
Molecular basis for the nerve dependence of limb regeneration in an adult vertebrate
-
Kumar, A., Godwin, J. W., Gates, P. B., Garza-Garcia, A. A., Brockes, J. P. Molecular basis for the nerve dependence of limb regeneration in an adult vertebrate. Science 318, 772-777 (2007).
-
(2007)
Science
, vol.318
, pp. 772-777
-
-
Kumar, A.1
Godwin, J.W.2
Gates, P.B.3
Garza-Garcia, A.A.4
Brockes, J.P.5
-
4
-
-
29344463583
-
T. Fgf20 is essential for initiating zebrafish fin regeneration
-
Whitehead, G. G., Makino, S., Lien, C. L., Keating, M. T. fgf20 is essential for initiating zebrafish fin regeneration. Science 310, 1957-1960 (2005).
-
(2005)
Science
, vol.310
, pp. 1957-1960
-
-
Whitehead, G.G.1
Makino, S.2
Lien, C.L.3
Keating, M.4
-
5
-
-
84930486078
-
Signaling networks organizing regenerative growth of the zebrafish fin
-
Wehner, D., Weidinger, G. Signaling networks organizing regenerative growth of the zebrafish fin. Trends Genet. 31, 336-343 (2015).
-
(2015)
Trends Genet.
, vol.31
, pp. 336-343
-
-
Wehner, D.1
Weidinger, G.2
-
6
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
The ENCODE Project Consortium, E. P
-
The ENCODE Project Consortium, E. P. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012).
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
7
-
-
84923375031
-
Roadmap Epigenomics Consortium Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics Consortium Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015).
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
-
8
-
-
84863882671
-
Mechanisms of transcriptional precision in animal development
-
Lagha, M., Bothma, J. P., Levine, M. Mechanisms of transcriptional precision in animal development. Trends Genet. 28, 409-416 (2012).
-
(2012)
Trends Genet.
, vol.28
, pp. 409-416
-
-
Lagha, M.1
Bothma, J.P.2
Levine, M.3
-
9
-
-
70249088327
-
Genomic views of distant-acting enhancers
-
Visel, A., Rubin, E. M., Pennacchio, L. A. Genomic views of distant-acting enhancers. Nature 461, 199-205 (2009).
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
10
-
-
84930714663
-
A large genomic deletion leads to enhancer adoption by the lamin B1 gene: A second path to autosomal dominant adult-onset demyelinating leukodystrophy (ADLD)
-
Giorgio, E. et al. A large genomic deletion leads to enhancer adoption by the lamin B1 gene: a second path to autosomal dominant adult-onset demyelinating leukodystrophy (ADLD). Hum. Mol. Genet. 24, 3143-3154 (2015).
-
(2015)
Hum. Mol. Genet.
, vol.24
, pp. 3143-3154
-
-
Giorgio, E.1
-
11
-
-
72949110371
-
Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population
-
Rebeiz, M., Pool, J. E., Kassner, V. A., Aquadro, C. F., Carroll, S. B. Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population. Science 326, 1663-1667 (2009).
-
(2009)
Science
, vol.326
, pp. 1663-1667
-
-
Rebeiz, M.1
Pool, J.E.2
Kassner, V.A.3
Aquadro, C.F.4
Carroll, S.B.5
-
12
-
-
84928431514
-
Long-range gene regulation and novel therapeutic applications
-
van den Heuvel, A., Stadhouders, R.,rieu-Soler, C., Grosveld, F., Soler, E. Long-range gene regulation and novel therapeutic applications. Blood 125, 1521-1525 (2015).
-
(2015)
Blood
, vol.125
, pp. 1521-1525
-
-
Vanden Heuvel, A.1
Stadhouders Rieu-Soler R, C.2
Grosveld, F.3
Soler, E.4
-
13
-
-
84954262110
-
Evolving new skeletal traits by cis-regulatory changes in bone morphogenetic proteins
-
Indjeian, V. B. et al. Evolving new skeletal traits by cis-regulatory changes in bone morphogenetic proteins. Cell 164, 45-56 (2016).
-
(2016)
Cell
, vol.164
, pp. 45-56
-
-
Indjeian, V.B.1
-
14
-
-
84911895715
-
Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci
-
Lonfat, N., Montavon, T., Darbellay, F., Gitto, S., Duboule, D. Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci. Science 346, 1004-1006 (2014).
-
(2014)
Science
, vol.346
, pp. 1004-1006
-
-
Lonfat, N.1
Montavon, T.2
Darbellay, F.3
Gitto, S.4
Duboule, D.5
-
15
-
-
84921628643
-
A NOTCH1-driven MYC enhancer promotes T cell development, transformation and acute lymphoblastic leukemia
-
Herranz, D. et al. A NOTCH1-driven MYC enhancer promotes T cell development, transformation and acute lymphoblastic leukemia. Nature Med. 20, 1130-1137 (2014).
-
(2014)
Nature Med
, vol.20
, pp. 1130-1137
-
-
Herranz, D.1
-
16
-
-
0028139089
-
Positional cloning of the mouse obese gene and its human homologue
-
Zhang, Y. et al. Positional cloning of the mouse obese gene and its human homologue. Nature 372, 425-432 (1994).
-
(1994)
Nature
, vol.372
, pp. 425-432
-
-
Zhang, Y.1
-
17
-
-
84882359496
-
Translational profiling of cardiomyocytes identifies an early Jak1/Stat3 injury response required for zebrafish heart regeneration
-
Fang, Y. et al. Translational profiling of cardiomyocytes identifies an early Jak1/Stat3 injury response required for zebrafish heart regeneration. Proc. Natl Acad. Sci. USA 110, 13416-13421 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 13416-13421
-
-
Fang, Y.1
-
18
-
-
79952527330
-
Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration
-
Kikuchi, K. et al. Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration. Dev. Cell 20, 397-404 (2011).
-
(2011)
Dev. Cell
, vol.20
, pp. 397-404
-
-
Kikuchi, K.1
-
19
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman, N. D. et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459, 108-112 (2009).
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
-
20
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M. P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA 107, 21931-21936 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
21
-
-
84922295278
-
Enhancer evolution across 20 mammalian species
-
Villar, D. et al. Enhancer evolution across 20 mammalian species. Cell 160, 554-566 (2015).
-
(2015)
Cell
, vol.160
, pp. 554-566
-
-
Villar, D.1
-
22
-
-
77956641239
-
ChIP-seq identification of weakly conserved heart enhancers
-
Blow, M. J. et al. ChIP-seq identification of weakly conserved heart enhancers. Nature Genet. 42, 806-810 (2010).
-
(2010)
Nature Genet.
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
-
23
-
-
84934444891
-
The mouse digit tip: From wound healing to regeneration
-
Simkin, J., Han, M., Yu, L., Yan, M., Muneoka, K. The mouse digit tip: from wound healing to regeneration. Methods Mol. Biol. 1037, 419-435 (2013).
-
(2013)
Methods Mol. Biol.
, vol.1037
, pp. 419-435
-
-
Simkin, J.1
Han, M.2
Yu, L.3
Yan, M.4
Muneoka, K.5
-
24
-
-
79952065525
-
Transient regenerative potential of the neonatal mouse heart
-
Porrello, E. R. et al. Transient regenerative potential of the neonatal mouse heart. Science 331, 1078-1080 (2011).
-
(2011)
Science
, vol.331
, pp. 1078-1080
-
-
Porrello, E.R.1
-
25
-
-
84879814199
-
Transcriptional regulation of endothelial cell and vascular development
-
Park, C., Kim, T. M., Malik, A. B. Transcriptional regulation of endothelial cell and vascular development. Circ. Res. 112, 1380-1400 (2013).
-
(2013)
Circ. Res.
, vol.112
, pp. 1380-1400
-
-
Park, C.1
Kim, T.M.2
Malik, A.B.3
-
26
-
-
57149148250
-
Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors
-
De Val, S. et al. Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors. Cell 135, 1053-1064 (2008).
-
(2008)
Cell
, vol.135
, pp. 1053-1064
-
-
De Val, S.1
-
27
-
-
29644445924
-
Fgf signaling instructs position-dependent growth rate during zebrafish fin regeneration
-
Lee, Y., Grill, S., Sanchez, A., Murphy-Ryan, M., Poss, K. D. Fgf signaling instructs position-dependent growth rate during zebrafish fin regeneration. Development 132, 5173-5183 (2005).
-
(2005)
Development
, vol.132
, pp. 5173-5183
-
-
Lee, Y.1
Grill, S.2
Sanchez, A.3
Murphy-Ryan, M.4
Poss, K.D.5
-
28
-
-
0025774136
-
Expression of a dominant negative mutant of the FGF receptor disrupts mesoderm formation in Xenopus embryos
-
Amaya, E., Musci, T. J., Kirschner, M. W. Expression of a dominant negative mutant of the FGF receptor disrupts mesoderm formation in Xenopus embryos. Cell 66, 257-270 (1991).
-
(1991)
Cell
, vol.66
, pp. 257-270
-
-
Amaya, E.1
Musci, T.J.2
Kirschner, M.W.3
-
29
-
-
77950201708
-
Primary contribution to zebrafish heart regeneration by gata4+ cardiomyocytes
-
Kikuchi, K. et al. Primary contribution to zebrafish heart regeneration by gata4+ cardiomyocytes. Nature 464, 601-605 (2010).
-
(2010)
Nature
, vol.464
, pp. 601-605
-
-
Kikuchi, K.1
-
30
-
-
84926443383
-
Neuregulin stimulation of cardiomyocyte regeneration in mice and human myocardium reveals a therapeutic window
-
Polizzotti, B. D. et al. Neuregulin stimulation of cardiomyocyte regeneration in mice and human myocardium reveals a therapeutic window. Sci. Translat. Med. 7, 281-245 (2015).
-
(2015)
Sci. Translat. Med.
, vol.7
, pp. 281-245
-
-
Polizzotti, B.D.1
-
31
-
-
85003054958
-
Nrg1 is an injury-induced cardiomyocyte mitogen for the endogenous heart regeneration program in zebrafish
-
Gemberling, M., Karra, R., Dickson, A. L., Poss, K. D. Nrg1 is an injury-induced cardiomyocyte mitogen for the endogenous heart regeneration program in zebrafish. eLife 4, e05871 (2015).
-
(2015)
ELife
, vol.4
, pp. e05871
-
-
Gemberling, M.1
Karra, R.2
Dickson, A.L.3
Poss, K.D.4
-
32
-
-
67650569135
-
Neuregulin1/ErbB4 signaling induces cardiomyocyte proliferation and repair of heart injury
-
Bersell, K., Arab, S., Haring, B., Kuhn, B. Neuregulin1/ErbB4 signaling induces cardiomyocyte proliferation and repair of heart injury. Cell 138, 257-270 (2009).
-
(2009)
Cell
, vol.138
, pp. 257-270
-
-
Bersell, K.1
Arab, S.2
Haring, B.3
Kuhn, B.4
-
33
-
-
84928342288
-
A distinct regulatory region of the Bmp5 locus activates gene expression following adult bone fracture or soft tissue injury
-
Guenther, C. A. et al. A distinct regulatory region of the Bmp5 locus activates gene expression following adult bone fracture or soft tissue injury. Bone 77, 31-41 (2015).
-
(2015)
Bone
, vol.77
, pp. 31-41
-
-
Guenther, C.A.1
-
34
-
-
84871439217
-
C/EBP transcription factors mediate epicardial activation during heart development and injury
-
Huang, G. N. et al. C/EBP transcription factors mediate epicardial activation during heart development and injury. Science 338, 1599-1603 (2012).
-
(2012)
Science
, vol.338
, pp. 1599-1603
-
-
Huang, G.N.1
-
35
-
-
84886292766
-
The zebrafish as a model for complex tissue regeneration
-
Gemberling, M., Bailey, T. J., Hyde, D. R., Poss, K. D. The zebrafish as a model for complex tissue regeneration. Trends Genet. 29, 611-620 (2013).
-
(2013)
Trends Genet
, vol.29
, pp. 611-620
-
-
Gemberling, M.1
Bailey, T.J.2
Hyde, D.R.3
Poss, K.D.4
-
36
-
-
84908439526
-
Reactivation of developmentally silenced globin genes by forced chromatin looping
-
Deng, W. et al. Reactivation of developmentally silenced globin genes by forced chromatin looping. Cell 158, 849-860 (2014).
-
(2014)
Cell
, vol.158
, pp. 849-860
-
-
Deng, W.1
-
37
-
-
84901763682
-
Neuropathologic implication of peripheral neuregulin-1 and EGF signals in dopaminergic dysfunction and behavioral deficits relevant to schizophrenia: Their target cells and time window
-
Nawa, H., Sotoyama, H., Iwakura, Y., Takei, N., Namba, H. Neuropathologic implication of peripheral neuregulin-1 and EGF signals in dopaminergic dysfunction and behavioral deficits relevant to schizophrenia: their target cells and time window. Biomed. Res. Int. 2014, 697935 (2014).
-
(2014)
Biomed. Res. Int.
, vol.2014
, pp. 697935
-
-
Nawa, H.1
Sotoyama, H.2
Iwakura, Y.3
Takei, N.4
Namba, H.5
-
38
-
-
50349085912
-
Neuregulins and cancer
-
Montero, J. C. et al. Neuregulins and cancer. Clin. Cancer Res. 14, 3237-3241 (2008).
-
(2008)
Clin. Cancer Res.
, vol.14
, pp. 3237-3241
-
-
Montero, J.C.1
-
39
-
-
0037073890
-
Heart regeneration in zebrafish
-
Poss, K. D., Wilson, L. G., Keating, M. T. Heart regeneration in zebrafish. Science 298, 2188-2190 (2002).
-
(2002)
Science
, vol.298
, pp. 2188-2190
-
-
Poss, K.D.1
Wilson, L.G.2
Keating, M.T.3
-
40
-
-
79960778952
-
The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion
-
Wang, J. et al. The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion. Development 138, 3421-3430 (2011).
-
(2011)
Development
, vol.138
, pp. 3421-3430
-
-
Wang, J.1
-
41
-
-
84861721597
-
Transposon-mediated BAC transgenesis in zebrafish
-
Suster, M. L., Abe, G., Schouw, A., Kawakami, K. Transposon-mediated BAC transgenesis in zebrafish. Nature Protocols 6, 1998-2021 (2011).
-
(2011)
Nature Protocols
, vol.6
, pp. 1998-2021
-
-
Suster, M.L.1
Abe, G.2
Schouw, A.3
Kawakami, K.4
-
42
-
-
33644824638
-
High-throughput assay for small molecules that modulate zebrafish embryonic heart rate
-
Burns, C. G. et al. High-throughput assay for small molecules that modulate zebrafish embryonic heart rate. Nature Chem. Biol. 1, 263-264 (2005).
-
(2005)
Nature Chem. Biol.
, vol.1
, pp. 263-264
-
-
Burns, C.G.1
-
43
-
-
0037334528
-
Suppression of lens growth by A-crystallin promoter-driven expression of diphtheria toxin results in disruption of retinal cell organization in zebrafish
-
Kurita, R. et al. Suppression of lens growth by A-crystallin promoter-driven expression of diphtheria toxin results in disruption of retinal cell organization in zebrafish. Dev. Biol. 255, 113-127 (2003).
-
(2003)
Dev. Biol.
, vol.255
, pp. 113-127
-
-
Kurita, R.1
-
44
-
-
0141449169
-
Mef2c is activated directly by myogenic basic helix-loop-helix proteins during skeletal muscle development in vivo
-
Dodou, E., Xu, S. M., Black, B. L. mef2c is activated directly by myogenic basic helix-loop-helix proteins during skeletal muscle development in vivo. Mech. Dev. 120, 1021-1032 (2003).
-
(2003)
Mech. Dev.
, vol.120
, pp. 1021-1032
-
-
Dodou, E.1
Xu, S.M.2
Black, B.L.3
-
45
-
-
0024584093
-
Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice
-
Kothary, R. et al. Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice. Development 105, 707-714 (1989).
-
(1989)
Development
, vol.105
, pp. 707-714
-
-
Kothary, R.1
-
46
-
-
84893215436
-
Surgical models for cardiac regeneration in neonatal mice
-
Mahmoud, A. I., Porrello, E. R., Kimura, W., Olson, E. N., Sadek, H. A. Surgical models for cardiac regeneration in neonatal mice. Nature Protocols 9, 305-311 (2014).
-
(2014)
Nature Protocols
, vol.9
, pp. 305-311
-
-
Mahmoud, A.I.1
Porrello, E.R.2
Kimura, W.3
Olson, E.N.4
Sadek, H.A.5
-
47
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L., Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
48
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J., Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
49
-
-
84880018266
-
Multiplexed Illumina sequencing libraries from picogram quantities of DNA
-
Bowman, S. K. et al. Multiplexed Illumina sequencing libraries from picogram quantities of DNA. BMC Genomics 14, 466 (2013).
-
(2013)
BMC Genomics
, vol.14
, pp. 466
-
-
Bowman, S.K.1
-
50
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nature Methods 9, 357-359 (2012).
-
(2012)
Nature Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
51
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang, Y. et al. Model-based analysis of ChIP-seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
-
52
-
-
67549089493
-
Maintenance of blastemal proliferation by functionally diverse epidermis in regenerating zebrafish fins
-
Lee, Y. et al. Maintenance of blastemal proliferation by functionally diverse epidermis in regenerating zebrafish fins. Dev. Biol. 331, 270-280 (2009).
-
(2009)
Dev. Biol.
, vol.331
, pp. 270-280
-
-
Lee, Y.1
-
53
-
-
40649111377
-
A chemical method for fast and sensitive detection of DNA synthesis in vivo
-
Salic, A., Mitchison, T. J. A chemical method for fast and sensitive detection of DNA synthesis in vivo. Proc. Natl Acad. Sci. USA 105, 2415-2420 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 2415-2420
-
-
Salic, A.1
Mitchison, T.J.2
|