메뉴 건너뛰기




Volumn 264, Issue , 2016, Pages 132-138

The EpiTect Methyl qPCR Assay as novel age estimation method in forensic biology

Author keywords

Aging; CpG Island; DNA methylation; Epigenetics; Gene promoter; Methylation sensitive restriction

Indexed keywords

GENOMIC DNA; AMPA RECEPTOR; C REACTIVE PROTEIN; GLUTAMATE RECEPTOR IONOTROPIC, AMPA 2; KCNQ1 PROTEIN, HUMAN; NERVE PROTEIN; NEURONAL PENTRAXIN; POTASSIUM CHANNEL KCNQ1; TRIM58 PROTEIN, MOUSE; TRIPARTITE MOTIF PROTEIN; UBIQUITIN PROTEIN LIGASE;

EID: 84963819340     PISSN: 03790738     EISSN: 18726283     Source Type: Journal    
DOI: 10.1016/j.forsciint.2016.03.047     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 0344196937 scopus 로고    scopus 로고
    • Aging, cancer and nutrition: the DNA methylation connection
    • Liu L., et al. Aging, cancer and nutrition: the DNA methylation connection. Mech. Ageing Dev. 2003, 124(10):989-998.
    • (2003) Mech. Ageing Dev. , vol.124 , Issue.10 , pp. 989-998
    • Liu, L.1
  • 2
    • 0020638422 scopus 로고
    • DNA methylation decreases in aging but not in immortal cells
    • Wilson V.L., Jones P.A. DNA methylation decreases in aging but not in immortal cells. Science 1983, 220(4601):1055-1057.
    • (1983) Science , vol.220 , Issue.4601 , pp. 1055-1057
    • Wilson, V.L.1    Jones, P.A.2
  • 3
    • 84862979818 scopus 로고    scopus 로고
    • Distinct DNA methylomes of newborns and centenarians
    • Heyn H., et al. Distinct DNA methylomes of newborns and centenarians. Proc. Natl. Acad. Sci. U.S.A. 2012, 109(26):10522-10527.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , Issue.26 , pp. 10522-10527
    • Heyn, H.1
  • 4
    • 0021777383 scopus 로고
    • The significance of DNA methylation in cellular aging
    • Springer
    • Holliday R. The significance of DNA methylation in cellular aging. Molecular Biology of Aging 1985, 269-283. Springer.
    • (1985) Molecular Biology of Aging , pp. 269-283
    • Holliday, R.1
  • 5
    • 84896718645 scopus 로고    scopus 로고
    • Aging of blood can be tracked by DNA methylation changes at just three CpG sites
    • Weidner C.I., et al. Aging of blood can be tracked by DNA methylation changes at just three CpG sites. Genome Biol. 2014, 15(2):R24.
    • (2014) Genome Biol. , vol.15 , Issue.2 , pp. R24
    • Weidner, C.I.1
  • 6
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander E.S., et al. Initial sequencing and analysis of the human genome. Nature 2001, 409(6822):860-921.
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
    • Lander, E.S.1
  • 7
    • 0022000776 scopus 로고
    • A fraction of the mouse genome that is derived from islands of nonmethylated: CpG-rich DNA
    • Bird A., et al. A fraction of the mouse genome that is derived from islands of nonmethylated: CpG-rich DNA. Cell 1985, 40(1):91-99.
    • (1985) Cell , vol.40 , Issue.1 , pp. 91-99
    • Bird, A.1
  • 8
    • 0026742792 scopus 로고
    • CpG islands as gene markers in the human genome
    • Larsen F., et al. CpG islands as gene markers in the human genome. Genomics 1992, 13(4):1095-1107.
    • (1992) Genomics , vol.13 , Issue.4 , pp. 1095-1107
    • Larsen, F.1
  • 9
    • 31944432339 scopus 로고    scopus 로고
    • A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
    • Saxonov S., Berg P., Brutlag D.L. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc. Natl. Acad. Sci. U. S.A. 2006, 103(5):1412-1417.
    • (2006) Proc. Natl. Acad. Sci. U. S.A. , vol.103 , Issue.5 , pp. 1412-1417
    • Saxonov, S.1    Berg, P.2    Brutlag, D.L.3
  • 10
    • 34047116826 scopus 로고    scopus 로고
    • Distribution: silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • Weber M., et al. Distribution: silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet. 2007, 39(4):457-466.
    • (2007) Nat. Genet. , vol.39 , Issue.4 , pp. 457-466
    • Weber, M.1
  • 11
  • 12
    • 0023216891 scopus 로고
    • CpG islands in vertebrate genomes
    • Gardiner-Garden M., Frommer M. CpG islands in vertebrate genomes. J. Mol. Biol. 1987, 196(2):261-282.
    • (1987) J. Mol. Biol. , vol.196 , Issue.2 , pp. 261-282
    • Gardiner-Garden, M.1    Frommer, M.2
  • 13
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: a sensitive and quantitative DNA methylation assay
    • Xiong Z., Laird P. COBRA: a sensitive and quantitative DNA methylation assay. Nucl. Acids Res. 1997, 25(12):2532-2534.
    • (1997) Nucl. Acids Res. , vol.25 , Issue.12 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.2
  • 14
    • 0029843950 scopus 로고    scopus 로고
    • Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands
    • Herman J.G., et al. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc. Natl. Acad. Sci. U.S.A. 1996, 93(18):9821-9826.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , Issue.18 , pp. 9821-9826
    • Herman, J.G.1
  • 15
    • 0026546877 scopus 로고
    • A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
    • Frommer M., et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. U.S.A. 1992, 89(5):1827-1831.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , Issue.5 , pp. 1827-1831
    • Frommer, M.1
  • 16
    • 27644548948 scopus 로고    scopus 로고
    • Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry
    • Ehrich M., et al. Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 2005, 102(44):15785-15790.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , Issue.44 , pp. 15785-15790
    • Ehrich, M.1
  • 17
    • 34548734299 scopus 로고    scopus 로고
    • Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing
    • Taylor H., et al. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res. 2007, 67(18):8511-8518.
    • (2007) Cancer Res. , vol.67 , Issue.18 , pp. 8511-8518
    • Taylor, H.1
  • 18
    • 34247559653 scopus 로고    scopus 로고
    • Methods for detecting DNA methylation in tumors: from bench to bedside
    • Shames D.S., Minna J.D., Gazdar A.F. Methods for detecting DNA methylation in tumors: from bench to bedside. Cancer Lett. 2007, 251(2):187-198.
    • (2007) Cancer Lett. , vol.251 , Issue.2 , pp. 187-198
    • Shames, D.S.1    Minna, J.D.2    Gazdar, A.F.3
  • 19
    • 0034654669 scopus 로고    scopus 로고
    • MethyLight: a high-throughput assay to measure DNA methylation
    • Eads C.A., et al. MethyLight: a high-throughput assay to measure DNA methylation. Nucl. Acids Res. 2000, 28(8):e32-e40.
    • (2000) Nucl. Acids Res. , vol.28 , Issue.8 , pp. e32-e40
    • Eads, C.A.1
  • 20
    • 84928768783 scopus 로고    scopus 로고
    • Advantage of ForensiX Swabs in retrieving and preserving biological fluids
    • Mawlood S.K., Alrowaithi M., Watson N. Advantage of ForensiX Swabs in retrieving and preserving biological fluids. J. Forensic Sci. 2015, 60(3):686-689.
    • (2015) J. Forensic Sci. , vol.60 , Issue.3 , pp. 686-689
    • Mawlood, S.K.1    Alrowaithi, M.2    Watson, N.3
  • 21
    • 84880352757 scopus 로고    scopus 로고
    • Genetic and epigenetic analysis of putative breast cancer stem cell models
    • Balic M., et al. Genetic and epigenetic analysis of putative breast cancer stem cell models. BMC Cancer 2013, 13(1):358.
    • (2013) BMC Cancer , vol.13 , Issue.1 , pp. 358
    • Balic, M.1
  • 22
    • 33845356420 scopus 로고    scopus 로고
    • Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
    • Ordway J., et al. Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis 2006, 27(12):2409-2423.
    • (2006) Carcinogenesis , vol.27 , Issue.12 , pp. 2409-2423
    • Ordway, J.1
  • 23
    • 34547792388 scopus 로고    scopus 로고
    • Epigenetic gene silencing in cancer: the DNA hypermethylome
    • Esteller M. Epigenetic gene silencing in cancer: the DNA hypermethylome. Hum. Mol. Genet. 2007, 16(R1):R50-R59.
    • (2007) Hum. Mol. Genet. , vol.16 , Issue.R1 , pp. R50-R59
    • Esteller, M.1
  • 24
    • 34249279527 scopus 로고    scopus 로고
    • Stability and flexibility of epigenetic gene regulation in mammalian development
    • Reik W. Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 2007, 447(7143):425-432.
    • (2007) Nature , vol.447 , Issue.7143 , pp. 425-432
    • Reik, W.1
  • 26
    • 67349255210 scopus 로고    scopus 로고
    • CpG islands - 'a rough guide'
    • Illingworth R.S., Bird A.P. CpG islands - 'a rough guide'. FEBS Lett. 2009, 583(11):1713-1720.
    • (2009) FEBS Lett. , vol.583 , Issue.11 , pp. 1713-1720
    • Illingworth, R.S.1    Bird, A.P.2
  • 27
    • 0032893755 scopus 로고    scopus 로고
    • Detection of aberrant p16 methylation in the plasma and serum of liver cancer patients
    • Wong I.H., et al. Detection of aberrant p16 methylation in the plasma and serum of liver cancer patients. Cancer Res. 1999, 59(1):71-73.
    • (1999) Cancer Res. , vol.59 , Issue.1 , pp. 71-73
    • Wong, I.H.1
  • 28
    • 79959509099 scopus 로고    scopus 로고
    • Epigenetic predictor of age
    • Bocklandt S., et al. Epigenetic predictor of age. PLoS ONE 2011, 6(6):e14821.
    • (2011) PLoS ONE , vol.6 , Issue.6 , pp. e14821
    • Bocklandt, S.1
  • 29
    • 80855144438 scopus 로고    scopus 로고
    • Epigenetic-aging-signature to determine age in different tissues
    • Koch C.M., Wagner W. Epigenetic-aging-signature to determine age in different tissues. Aging 2011, 3(10):1018-1027.
    • (2011) Aging , vol.3 , Issue.10 , pp. 1018-1027
    • Koch, C.M.1    Wagner, W.2
  • 30
    • 85165737717 scopus 로고    scopus 로고
    • D.H. 9th June, mailto:Hachemi.Zeraia@qiagen.com
    • D.H. 9th June 2014. mailto:Hachemi.Zeraia@qiagen.com.
    • (2014)
  • 31
    • 0034012364 scopus 로고    scopus 로고
    • Buccal swabs but not mouthwash samples can be used to obtain pretransplant DNA fingerprints from recipients of allogeneic bone marrow transplants
    • Thiede C., et al. Buccal swabs but not mouthwash samples can be used to obtain pretransplant DNA fingerprints from recipients of allogeneic bone marrow transplants. Bone Marrow Transplant. 2000, 25(5):575.
    • (2000) Bone Marrow Transplant. , vol.25 , Issue.5 , pp. 575
    • Thiede, C.1
  • 32
    • 84907187132 scopus 로고    scopus 로고
    • DNA methylation signatures triggered by prenatal maternal stress exposure to a natural disaster: project ice storm
    • Cao-Lei L., et al. DNA methylation signatures triggered by prenatal maternal stress exposure to a natural disaster: project ice storm. PLOS ONE 2014, 9(9):e107653.
    • (2014) PLOS ONE , vol.9 , Issue.9 , pp. e107653
    • Cao-Lei, L.1
  • 33
    • 47649091157 scopus 로고    scopus 로고
    • DNA methylation and structural and functional bimodality of vertebrate promoters
    • Elango N., Soojin V.Y. DNA methylation and structural and functional bimodality of vertebrate promoters. Mol. Biol. Evol. 2008, 25(8):1602-1608.
    • (2008) Mol. Biol. Evol. , vol.25 , Issue.8 , pp. 1602-1608
    • Elango, N.1    Soojin, V.Y.2
  • 34
    • 63449103531 scopus 로고    scopus 로고
    • DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
    • Zhang Y., et al. DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution. PLoS Genet. 2009, 5(3):e1000438.
    • (2009) PLoS Genet. , vol.5 , Issue.3 , pp. e1000438
    • Zhang, Y.1
  • 36
    • 0026634757 scopus 로고
    • McrBC: a multisubunit GTP-dependent restriction endonuclease
    • Sutherland E., Coe L., Raleigh E.A. McrBC: a multisubunit GTP-dependent restriction endonuclease. J. Mol. Biol. 1992, 225(2):327-348.
    • (1992) J. Mol. Biol. , vol.225 , Issue.2 , pp. 327-348
    • Sutherland, E.1    Coe, L.2    Raleigh, E.A.3
  • 37
    • 0031981857 scopus 로고    scopus 로고
    • Dependence of McrBC cleavage on distance between recognition elements
    • Stewart F., Raleigh E. Dependence of McrBC cleavage on distance between recognition elements. Biol. Chem. 1997, 379(4-5):611-616.
    • (1997) Biol. Chem. , vol.379 , Issue.4-5 , pp. 611-616
    • Stewart, F.1    Raleigh, E.2
  • 39
    • 0028051528 scopus 로고
    • CpG island promoter region methylation patterns of the inactive-X-chromosome hypoxanthine phosphoribosyltransferase (Hprt) gene
    • Park J.-G., Chapman V.M. CpG island promoter region methylation patterns of the inactive-X-chromosome hypoxanthine phosphoribosyltransferase (Hprt) gene. Mol. Cell. Biol. 1994, 14(12):7975-7983.
    • (1994) Mol. Cell. Biol. , vol.14 , Issue.12 , pp. 7975-7983
    • Park, J.-G.1    Chapman, V.M.2
  • 40
    • 84947028056 scopus 로고    scopus 로고
    • Reconfiguration of DNA methylation in ageing
    • Zampieri M., et al. Reconfiguration of DNA methylation in ageing. Mech. Ageing Dev. 2015.
    • (2015) Mech. Ageing Dev.
    • Zampieri, M.1
  • 41
    • 79951791071 scopus 로고    scopus 로고
    • DNA methylation-based forensic tissue identification
    • Frumkin D., et al. DNA methylation-based forensic tissue identification. Forensic Sci. Int. Genet. 2011, 5(5):517-524.
    • (2011) Forensic Sci. Int. Genet. , vol.5 , Issue.5 , pp. 517-524
    • Frumkin, D.1
  • 42
    • 84903784400 scopus 로고    scopus 로고
    • Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis
    • Dunn J. Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis. J. Clin. Investig. 2014, 124(7).
    • (2014) J. Clin. Investig. , vol.124 , Issue.7
    • Dunn, J.1
  • 43
    • 84922042142 scopus 로고    scopus 로고
    • An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training
    • Lindholm M.E., et al. An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training. Epigenetics 2014, 9(12):1557-1569.
    • (2014) Epigenetics , vol.9 , Issue.12 , pp. 1557-1569
    • Lindholm, M.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.