-
1
-
-
84890577781
-
Proteolytic post-translational modification of proteins: Proteomic tools and methodology
-
Rogers, L. D.; Overall, C. M. Proteolytic post-translational modification of proteins: proteomic tools and methodology Mol. Cell. Proteomics 2013, 12, 3532-42 10.1074/mcp.M113.031310
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3532-3542
-
-
Rogers, L.D.1
Overall, C.M.2
-
2
-
-
85027932761
-
The path of no return-Truncated protein N-termini and current ignorance of their genesis
-
Fortelny, N.; Pavlidis, P.; Overall, C. M. The path of no return-Truncated protein N-termini and current ignorance of their genesis Proteomics 2015, 15, 2547-52 10.1002/pmic.201500043
-
(2015)
Proteomics
, vol.15
, pp. 2547-2552
-
-
Fortelny, N.1
Pavlidis, P.2
Overall, C.M.3
-
3
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
Gevaert, K.; Goethals, M.; Martens, L.; Van Damme, J.; Staes, A.; Thomas, G. R.; Vandekerckhove, J. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides Nat. Biotechnol. 2003, 21, 566-9 10.1038/nbt810
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
Goethals, M.2
Martens, L.3
Van Damme, J.4
Staes, A.5
Thomas, G.R.6
Vandekerckhove, J.7
-
4
-
-
77749320923
-
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
-
Kleifeld, O.; Doucet, A.; auf dem Keller, U.; Prudova, A.; Schilling, O.; Kainthan, R. K.; Starr, A. E.; Foster, L. J.; Kizhakkedathu, J. N.; Overall, C. M. Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products Nat. Biotechnol. 2010, 28, 281-8 10.1038/nbt.1611
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 281-288
-
-
Kleifeld, O.1
Doucet, A.2
Auf Dem Keller, U.3
Prudova, A.4
Schilling, O.5
Kainthan, R.K.6
Starr, A.E.7
Foster, L.J.8
Kizhakkedathu, J.N.9
Overall, C.M.10
-
5
-
-
77951848689
-
A statistics-based platform for quantitative N-terminome analysis and identification of protease cleavage products
-
auf dem Keller, U.; Prudova, A.; Gioia, M.; Butler, G. S.; Overall, C. M. A statistics-based platform for quantitative N-terminome analysis and identification of protease cleavage products Mol. Cell. Proteomics 2010, 9, 912-27 10.1074/mcp.M000032-MCP201
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 912-927
-
-
Auf Dem Keller, U.1
Prudova, A.2
Gioia, M.3
Butler, G.S.4
Overall, C.M.5
-
6
-
-
77951134556
-
Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics
-
Prudova, A.; auf dem Keller, U.; Butler, G. S.; Overall, C. M. Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics Mol. Cell. Proteomics 2010, 9, 894-911 10.1074/mcp.M000050-MCP201
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 894-911
-
-
Prudova, A.1
Auf Dem Keller, U.2
Butler, G.S.3
Overall, C.M.4
-
7
-
-
84943142452
-
Positive Enrichment of C-Terminal Peptides Using Oxazolone Chemistry and Biotinylation
-
Liu, M.; Fang, C.; Pan, X.; Jiang, H.; Zhang, L.; Zhang, Y.; Yang, P.; Lu, H.; Zhang, L. Positive Enrichment of C-Terminal Peptides Using Oxazolone Chemistry and Biotinylation Anal. Chem. 2015, 87, 9916-22 10.1021/acs.analchem.5b02437
-
(2015)
Anal. Chem.
, vol.87
, pp. 9916-9922
-
-
Liu, M.1
Fang, C.2
Pan, X.3
Jiang, H.4
Zhang, L.5
Zhang, Y.6
Yang, P.7
Lu, H.8
Zhang, L.9
-
8
-
-
77954693076
-
Proteome-wide analysis of protein carboxy termini: C terminomics
-
Schilling, O.; Barre, O.; Huesgen, P. F.; Overall, C. M. Proteome-wide analysis of protein carboxy termini: C terminomics Nat. Methods 2010, 7, 508-11 10.1038/nmeth.1467
-
(2010)
Nat. Methods
, vol.7
, pp. 508-511
-
-
Schilling, O.1
Barre, O.2
Huesgen, P.F.3
Overall, C.M.4
-
9
-
-
84868260034
-
Enhanced electron transfer dissociation of peptides modified at C-terminus with fixed charges
-
Ko, B. J.; Brodbelt, J. S. Enhanced electron transfer dissociation of peptides modified at C-terminus with fixed charges J. Am. Soc. Mass Spectrom. 2012, 23, 1991-2000 10.1007/s13361-012-0458-z
-
(2012)
J. Am. Soc. Mass Spectrom.
, vol.23
, pp. 1991-2000
-
-
Ko, B.J.1
Brodbelt, J.S.2
-
10
-
-
84945356152
-
Systematic Optimization of C-Terminal Amine-Based Isotope Labeling of Substrates Approach for Deep Screening of C-Terminome
-
Zhang, Y.; He, Q.; Ye, J.; Li, Y.; Huang, L.; Li, Q.; Huang, J.; Lu, J.; Zhang, X. Systematic Optimization of C-Terminal Amine-Based Isotope Labeling of Substrates Approach for Deep Screening of C-Terminome Anal. Chem. 2015, 87, 10354-61 10.1021/acs.analchem.5b02451
-
(2015)
Anal. Chem.
, vol.87
, pp. 10354-10361
-
-
Zhang, Y.1
He, Q.2
Ye, J.3
Li, Y.4
Huang, L.5
Li, Q.6
Huang, J.7
Lu, J.8
Zhang, X.9
-
11
-
-
84925027070
-
LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification
-
Huesgen, P. F.; Lange, P. F.; Rogers, L. D.; Solis, N.; Eckhard, U.; Kleifeld, O.; Goulas, T.; Gomis-Ruth, F. X.; Overall, C. M. LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification Nat. Methods 2015, 12, 55-8 10.1038/nmeth.3177
-
(2015)
Nat. Methods
, vol.12
, pp. 55-58
-
-
Huesgen, P.F.1
Lange, P.F.2
Rogers, L.D.3
Solis, N.4
Eckhard, U.5
Kleifeld, O.6
Goulas, T.7
Gomis-Ruth, F.X.8
Overall, C.M.9
-
12
-
-
84939826366
-
Protein Termini and Their Modifications Revealed by Positional Proteomics
-
Marino, G.; Eckhard, U.; Overall, C. M. Protein Termini and Their Modifications Revealed by Positional Proteomics ACS Chem. Biol. 2015, 10, 1754-64 10.1021/acschembio.5b00189
-
(2015)
ACS Chem. Biol.
, vol.10
, pp. 1754-1764
-
-
Marino, G.1
Eckhard, U.2
Overall, C.M.3
-
13
-
-
80053604348
-
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
-
Staes, A.; Impens, F.; Van Damme, P.; Ruttens, B.; Goethals, M.; Demol, H.; Timmerman, E.; Vandekerckhove, J.; Gevaert, K. Selecting protein N-terminal peptides by combined fractional diagonal chromatography Nat. Protoc. 2011, 6, 1130-41 10.1038/nprot.2011.355
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1130-1141
-
-
Staes, A.1
Impens, F.2
Van Damme, P.3
Ruttens, B.4
Goethals, M.5
Demol, H.6
Timmerman, E.7
Vandekerckhove, J.8
Gevaert, K.9
-
14
-
-
77954694885
-
Complementary positional proteomics for screening substrates of endo- and exoproteases
-
Van Damme, P.; Staes, A.; Bronsoms, S.; Helsens, K.; Colaert, N.; Timmerman, E.; Aviles, F. X.; Vandekerckhove, J.; Gevaert, K. Complementary positional proteomics for screening substrates of endo- and exoproteases Nat. Methods 2010, 7, 512-5 10.1038/nmeth.1469
-
(2010)
Nat. Methods
, vol.7
, pp. 512-515
-
-
Van Damme, P.1
Staes, A.2
Bronsoms, S.3
Helsens, K.4
Colaert, N.5
Timmerman, E.6
Aviles, F.X.7
Vandekerckhove, J.8
Gevaert, K.9
-
15
-
-
33745268913
-
Enhancing electrospray ionization efficiency of peptides by derivatization
-
Mirzaei, H.; Regnier, F. Enhancing electrospray ionization efficiency of peptides by derivatization Anal. Chem. 2006, 78, 4175-83 10.1021/ac0602266
-
(2006)
Anal. Chem.
, vol.78
, pp. 4175-4183
-
-
Mirzaei, H.1
Regnier, F.2
-
16
-
-
11144356752
-
Enhanced responses in matrix-assisted laser desorption/ionization mass spectrometry of peptides derivatized with arginine via a C-terminal oxazolone
-
Nakazawa, T.; Yamaguchi, M.; Nishida, K.; Kuyama, H.; Obama, T.; Ando, E.; Okamura, T. A.; Ueyama, N.; Tanaka, K.; Norioka, S. Enhanced responses in matrix-assisted laser desorption/ionization mass spectrometry of peptides derivatized with arginine via a C-terminal oxazolone Rapid Commun. Mass Spectrom. 2004, 18, 799-807 10.1002/rcm.1409
-
(2004)
Rapid Commun. Mass Spectrom.
, vol.18
, pp. 799-807
-
-
Nakazawa, T.1
Yamaguchi, M.2
Nishida, K.3
Kuyama, H.4
Obama, T.5
Ando, E.6
Okamura, T.A.7
Ueyama, N.8
Tanaka, K.9
Norioka, S.10
-
17
-
-
33751238211
-
Enhancement of MALDI-MS spectra of C-terminal peptides by the modification of proteins via an active ester generated in situ from an oxazolone
-
Yamaguchi, M.; Oka, M.; Nishida, K.; Ishida, M.; Hamazaki, A.; Kuyama, H.; Ando, E.; Okamura, T. A.; Ueyama, N.; Norioka, S.; Nishimura, O.; Tsunasawa, S.; Nakazawa, T. Enhancement of MALDI-MS spectra of C-terminal peptides by the modification of proteins via an active ester generated in situ from an oxazolone Anal. Chem. 2006, 78, 7861-9 10.1021/ac0610816
-
(2006)
Anal. Chem.
, vol.78
, pp. 7861-7869
-
-
Yamaguchi, M.1
Oka, M.2
Nishida, K.3
Ishida, M.4
Hamazaki, A.5
Kuyama, H.6
Ando, E.7
Okamura, T.A.8
Ueyama, N.9
Norioka, S.10
Nishimura, O.11
Tsunasawa, S.12
Nakazawa, T.13
-
18
-
-
84885634003
-
Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation
-
Frey, B. L.; Ladror, D. T.; Sondalle, S. B.; Krusemark, C. J.; Jue, A. L.; Coon, J. J.; Smith, L. M. Chemical derivatization of peptide carboxyl groups for highly efficient electron transfer dissociation J. Am. Soc. Mass Spectrom. 2013, 24, 1710-21 10.1007/s13361-013-0701-2
-
(2013)
J. Am. Soc. Mass Spectrom.
, vol.24
, pp. 1710-1721
-
-
Frey, B.L.1
Ladror, D.T.2
Sondalle, S.B.3
Krusemark, C.J.4
Jue, A.L.5
Coon, J.J.6
Smith, L.M.7
-
19
-
-
84891796097
-
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
-
Vizcaino, J. A.; Deutsch, E. W.; Wang, R.; Csordas, A.; Reisinger, F.; Rios, D.; Dianes, J. A.; Sun, Z.; Farrah, T.; Bandeira, N.; Binz, P. A.; Xenarios, I.; Eisenacher, M.; Mayer, G.; Gatto, L.; Campos, A.; Chalkley, R. J.; Kraus, H. J.; Albar, J. P.; Martinez-Bartolome, S.; Apweiler, R.; Omenn, G. S.; Martens, L.; Jones, A. R.; Hermjakob, H. ProteomeXchange provides globally coordinated proteomics data submission and dissemination Nat. Biotechnol. 2014, 32, 223-6 10.1038/nbt.2839
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 223-226
-
-
Vizcaino, J.A.1
Deutsch, E.W.2
Wang, R.3
Csordas, A.4
Reisinger, F.5
Rios, D.6
Dianes, J.A.7
Sun, Z.8
Farrah, T.9
Bandeira, N.10
Binz, P.A.11
Xenarios, I.12
Eisenacher, M.13
Mayer, G.14
Gatto, L.15
Campos, A.16
Chalkley, R.J.17
Kraus, H.J.18
Albar, J.P.19
Martinez-Bartolome, S.20
Apweiler, R.21
Omenn, G.S.22
Martens, L.23
Jones, A.R.24
Hermjakob, H.25
more..
-
20
-
-
84945497412
-
ProCon - PROteomics CONversion tool
-
Mayer, G.; Stephan, C.; Meyer, H. E.; Kohl, M.; Marcus, K.; Eisenacher, M. ProCon-PROteomics CONversion tool J. Proteomics 2015, 129, 56-62 10.1016/j.jprot.2015.06.015
-
(2015)
J. Proteomics
, vol.129
, pp. 56-62
-
-
Mayer, G.1
Stephan, C.2
Meyer, H.E.3
Kohl, M.4
Marcus, K.5
Eisenacher, M.6
-
21
-
-
0028281399
-
A method for the high efficiency of water-soluble carbodiimide-mediated amidation
-
Sehgal, D.; Vijay, I. K. A method for the high efficiency of water-soluble carbodiimide-mediated amidation Anal. Biochem. 1994, 218, 87-91 10.1006/abio.1994.1144
-
(1994)
Anal. Biochem.
, vol.218
, pp. 87-91
-
-
Sehgal, D.1
Vijay, I.K.2
-
22
-
-
0018172951
-
Radiolabeling of proteins by reductive alkylation with [14C]formaldehyde and sodium cyanoborohydride
-
Dottavio-Martin, D.; Ravel, J. M. Radiolabeling of proteins by reductive alkylation with [14C]formaldehyde and sodium cyanoborohydride Anal. Biochem. 1978, 87, 562-5 10.1016/0003-2697(78)90706-6
-
(1978)
Anal. Biochem.
, vol.87
, pp. 562-565
-
-
Dottavio-Martin, D.1
Ravel, J.M.2
-
23
-
-
0029181831
-
Mechanism of amide formation by carbodiimide for bioconjugation in aqueous media
-
Nakajima, N.; Ikada, Y. Mechanism of amide formation by carbodiimide for bioconjugation in aqueous media Bioconjugate Chem. 1995, 6, 123-30 10.1021/bc00031a015
-
(1995)
Bioconjugate Chem.
, vol.6
, pp. 123-130
-
-
Nakajima, N.1
Ikada, Y.2
-
24
-
-
84855405436
-
Tandem mass tag protein labeling for top-down identification and quantification
-
Hung, C. W.; Tholey, A. Tandem mass tag protein labeling for top-down identification and quantification Anal. Chem. 2012, 84, 161-70 10.1021/ac202243r
-
(2012)
Anal. Chem.
, vol.84
, pp. 161-170
-
-
Hung, C.W.1
Tholey, A.2
-
25
-
-
0017412697
-
Detection of the stable addition of carbodiimide to proteins
-
Timkovich, R. Detection of the stable addition of carbodiimide to proteins Anal. Biochem. 1977, 79, 135-43 10.1016/0003-2697(77)90387-6
-
(1977)
Anal. Biochem.
, vol.79
, pp. 135-143
-
-
Timkovich, R.1
-
26
-
-
3042789073
-
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
-
Syka, J. E.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 9528-33 10.1073/pnas.0402700101
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 9528-9533
-
-
Syka, J.E.1
Coon, J.J.2
Schroeder, M.J.3
Shabanowitz, J.4
Hunt, D.F.5
-
27
-
-
84868332118
-
A systematic investigation into the nature of tryptic HCD spectra
-
Michalski, A.; Neuhauser, N.; Cox, J.; Mann, M. A systematic investigation into the nature of tryptic HCD spectra J. Proteome Res. 2012, 11, 5479-91 10.1021/pr3007045
-
(2012)
J. Proteome Res.
, vol.11
, pp. 5479-5491
-
-
Michalski, A.1
Neuhauser, N.2
Cox, J.3
Mann, M.4
-
28
-
-
84889087465
-
The fate of b-ions in the two worlds of collision-induced dissociation
-
Waldera-Lupa, D. M.; Stefanski, A.; Meyer, H. E.; Stuhler, K. The fate of b-ions in the two worlds of collision-induced dissociation Biochim. Biophys. Acta, Proteins Proteomics 2013, 1834, 2843-8 10.1016/j.bbapap.2013.08.007
-
(2013)
Biochim. Biophys. Acta, Proteins Proteomics
, vol.1834
, pp. 2843-2848
-
-
Waldera-Lupa, D.M.1
Stefanski, A.2
Meyer, H.E.3
Stuhler, K.4
-
29
-
-
84904096104
-
Statistical characterization of HCD fragmentation patterns of tryptic peptides on an LTQ Orbitrap Velos mass spectrometer
-
Shao, C.; Zhang, Y.; Sun, W. Statistical characterization of HCD fragmentation patterns of tryptic peptides on an LTQ Orbitrap Velos mass spectrometer J. Proteomics 2014, 109, 26-37 10.1016/j.jprot.2014.06.012
-
(2014)
J. Proteomics
, vol.109
, pp. 26-37
-
-
Shao, C.1
Zhang, Y.2
Sun, W.3
-
30
-
-
14844331822
-
Beyond quantitative proteomics: Signal enhancement of the a1 ion as a mass tag for peptide sequencing using dimethyl labeling
-
Hsu, J. L.; Huang, S. Y.; Shiea, J. T.; Huang, W. Y.; Chen, S. H. Beyond quantitative proteomics: signal enhancement of the a1 ion as a mass tag for peptide sequencing using dimethyl labeling J. Proteome Res. 2005, 4, 101-8 10.1021/pr049837+
-
(2005)
J. Proteome Res.
, vol.4
, pp. 101-108
-
-
Hsu, J.L.1
Huang, S.Y.2
Shiea, J.T.3
Huang, W.Y.4
Chen, S.H.5
-
31
-
-
79955831978
-
Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos
-
Frese, C. K.; Altelaar, A. F.; Hennrich, M. L.; Nolting, D.; Zeller, M.; Griep-Raming, J.; Heck, A. J.; Mohammed, S. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos J. Proteome Res. 2011, 10, 2377-88 10.1021/pr1011729
-
(2011)
J. Proteome Res.
, vol.10
, pp. 2377-2388
-
-
Frese, C.K.1
Altelaar, A.F.2
Hennrich, M.L.3
Nolting, D.4
Zeller, M.5
Griep-Raming, J.6
Heck, A.J.7
Mohammed, S.8
-
32
-
-
84901945789
-
Confetti: A multiprotease map of the HeLa proteome for comprehensive proteomics
-
Guo, X.; Trudgian, D. C.; Lemoff, A.; Yadavalli, S.; Mirzaei, H. Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics Mol. Cell. Proteomics 2014, 13, 1573-84 10.1074/mcp.M113.035170
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1573-1584
-
-
Guo, X.1
Trudgian, D.C.2
Lemoff, A.3
Yadavalli, S.4
Mirzaei, H.5
-
33
-
-
84938679042
-
Identification and relative quantification of phosphopeptides by a combination of multi-protease digestion and isobaric labeling
-
Linke, D.; Koudelka, T.; Becker, A.; Tholey, A. Identification and relative quantification of phosphopeptides by a combination of multi-protease digestion and isobaric labeling Rapid Commun. Mass Spectrom. 2015, 29, 919-926 10.1002/rcm.7185
-
(2015)
Rapid Commun. Mass Spectrom.
, vol.29
, pp. 919-926
-
-
Linke, D.1
Koudelka, T.2
Becker, A.3
Tholey, A.4
-
34
-
-
0033541674
-
Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry
-
Arnold, R. J.; Reilly, J. P. Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry Anal. Biochem. 1999, 269, 105-12 10.1006/abio.1998.3077
-
(1999)
Anal. Biochem.
, vol.269
, pp. 105-112
-
-
Arnold, R.J.1
Reilly, J.P.2
-
35
-
-
0024674214
-
Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12
-
Kang, W. K.; Icho, T.; Isono, S.; Kitakawa, M.; Isono, K. Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12 Mol. Gen. Genet. 1989, 217, 281-8 10.1007/BF02464894
-
(1989)
Mol. Gen. Genet.
, vol.217
, pp. 281-288
-
-
Kang, W.K.1
Icho, T.2
Isono, S.3
Kitakawa, M.4
Isono, K.5
|