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Volumn 11, Issue 11, 2012, Pages 5479-5491

A systematic investigation into the nature of tryptic HCD spectra

Author keywords

CID; Expert System; fragmentation mechanisms; HCD; ion types; shotgun proteomics; spectrum annotation; tandem mass spectrometry

Indexed keywords

AMINO ACID; ION; PEPTIDES AND PROTEINS;

EID: 84868332118     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr3007045     Document Type: Article
Times cited : (91)

References (64)
  • 2
    • 77954464041 scopus 로고    scopus 로고
    • Proteomics: A pragmatic perspective
    • Mallick, P.; Kuster, B. Proteomics: a pragmatic perspective Nat. Biotechnol. 2010, 28 (7) 695-709
    • (2010) Nat. Biotechnol. , vol.28 , Issue.7 , pp. 695-709
    • Mallick, P.1    Kuster, B.2
  • 3
    • 79959424627 scopus 로고    scopus 로고
    • Quantitative, high-resolution proteomics for data-driven systems biology
    • Cox, J.; Mann, M. Quantitative, high-resolution proteomics for data-driven systems biology Annu. Rev. Biochem. 2011, 80, 273-99
    • (2011) Annu. Rev. Biochem. , vol.80 , pp. 273-299
    • Cox, J.1    Mann, M.2
  • 4
    • 35848929694 scopus 로고    scopus 로고
    • Analysis and validation of proteomic data generated by tandem mass spectrometry
    • Nesvizhskii, A. I.; Vitek, O.; Aebersold, R. Analysis and validation of proteomic data generated by tandem mass spectrometry Nat. Methods 2007, 4 (10) 787-97
    • (2007) Nat. Methods , vol.4 , Issue.10 , pp. 787-797
    • Nesvizhskii, A.I.1    Vitek, O.2    Aebersold, R.3
  • 5
    • 79951925573 scopus 로고    scopus 로고
    • The potential cost of high-throughput proteomics
    • White, F. M. The potential cost of high-throughput proteomics Sci. Signaling 2011, 4 (160) pe8
    • (2011) Sci. Signaling , vol.4 , Issue.160 , pp. 8
    • White, F.M.1
  • 6
    • 84856692718 scopus 로고    scopus 로고
    • De novo sequencing and homology searching
    • 014902
    • Ma, B.; Johnson, R. De novo sequencing and homology searching Mol. Cell. Proteomics 2012, 11 (2) O111 014902
    • (2012) Mol. Cell. Proteomics , vol.11 , Issue.2 , pp. 111
    • Ma, B.1    Johnson, R.2
  • 7
    • 0023804303 scopus 로고
    • Contributions of mass spectrometry to peptide and protein structure
    • Biemann, K. Contributions of mass spectrometry to peptide and protein structure Biomed. Environ. Mass Spectrom. 1988, 16 (1-12) 99-111
    • (1988) Biomed. Environ. Mass Spectrom. , vol.16 , Issue.1-12 , pp. 99-111
    • Biemann, K.1
  • 8
    • 58249091403 scopus 로고    scopus 로고
    • Spectroscopic evidence for an oxazolone structure of the b(2) fragment ion from protonated tri-alanine
    • Oomens, J.; Young, S.; Molesworth, S.; van Stipdonk, M. Spectroscopic evidence for an oxazolone structure of the b(2) fragment ion from protonated tri-alanine J. Am. Soc. Mass Spectrom. 2009, 20 (2) 334-9
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , Issue.2 , pp. 334-339
    • Oomens, J.1    Young, S.2    Molesworth, S.3    Van Stipdonk, M.4
  • 9
    • 62149128581 scopus 로고    scopus 로고
    • What is the structure of b(2) ions generated from doubly protonated tryptic peptides?
    • Bythell, B. J.; Somogyi, A.; Paizs, B. What is the structure of b(2) ions generated from doubly protonated tryptic peptides? J. Am. Soc. Mass Spectrom. 2009, 20 (4) 618-24
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , Issue.4 , pp. 618-624
    • Bythell, B.J.1    Somogyi, A.2    Paizs, B.3
  • 11
    • 0034501099 scopus 로고    scopus 로고
    • Mobile and localized protons: A framework for understanding peptide dissociation
    • Wysocki, V. H.; Tsaprailis, G.; Smith, L. L.; Breci, L. A. Mobile and localized protons: a framework for understanding peptide dissociation J. Mass Spectrom. 2000, 35 (12) 1399-406
    • (2000) J. Mass Spectrom. , vol.35 , Issue.12 , pp. 1399-1406
    • Wysocki, V.H.1    Tsaprailis, G.2    Smith, L.L.3    Breci, L.A.4
  • 12
    • 78650405796 scopus 로고    scopus 로고
    • The mobile proton hypothesis in fragmentation of protonated peptides: A perspective
    • Boyd, R.; Somogyi, A. The mobile proton hypothesis in fragmentation of protonated peptides: a perspective J. Am. Soc. Mass Spectrom. 2010, 21 (8) 1275-8
    • (2010) J. Am. Soc. Mass Spectrom. , vol.21 , Issue.8 , pp. 1275-1278
    • Boyd, R.1    Somogyi, A.2
  • 13
    • 21844457685 scopus 로고    scopus 로고
    • Fragmentation pathways of protonated peptides
    • Paizs, B.; Suhai, S. Fragmentation pathways of protonated peptides Mass Spectrom. Rev. 2005, 24 (4) 508-48
    • (2005) Mass Spectrom. Rev. , vol.24 , Issue.4 , pp. 508-548
    • Paizs, B.1    Suhai, S.2
  • 14
    • 30144443840 scopus 로고    scopus 로고
    • Peptide sequence analysis
    • Medzihradszky, K. F. Peptide sequence analysis Methods Enzymol. 2005, 402, 209-44
    • (2005) Methods Enzymol. , vol.402 , pp. 209-244
    • Medzihradszky, K.F.1
  • 15
    • 0842285056 scopus 로고
    • The interpretation of collision-induced dissociation tandem mass-spectra of peptides
    • Papayannopoulos, I. A. The interpretation of collision-induced dissociation tandem mass-spectra of peptides Mass Spectrom. Rev. 1995, 14 (1) 49-73
    • (1995) Mass Spectrom. Rev. , vol.14 , Issue.1 , pp. 49-73
    • Papayannopoulos, I.A.1
  • 16
    • 0000183664 scopus 로고
    • Low-mass ions produced from peptides by high-energy collision-induced dissociation in tandem mass-spectrometry
    • Falick, A. M.; Hines, W. M.; Medzihradszky, K. F.; Baldwin, M. A.; Gibson, B. W. Low-mass ions produced from peptides by high-energy collision-induced dissociation in tandem mass-spectrometry J. Am. Soc. Mass Spectrom. 1993, 4 (11) 882-93
    • (1993) J. Am. Soc. Mass Spectrom. , vol.4 , Issue.11 , pp. 882-893
    • Falick, A.M.1    Hines, W.M.2    Medzihradszky, K.F.3    Baldwin, M.A.4    Gibson, B.W.5
  • 17
    • 24044491542 scopus 로고    scopus 로고
    • Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliable and comprehensive automatic analysis of large datasets
    • Chalkley, R. J.; Baker, P. R.; Huang, L.; Hansen, K. C.; Allen, N. P.; Rexach, M.; Burlingame, A. L. Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliable and comprehensive automatic analysis of large datasets Mol. Cell. Proteomics 2005, 4 (8) 1194-204
    • (2005) Mol. Cell. Proteomics , vol.4 , Issue.8 , pp. 1194-1204
    • Chalkley, R.J.1    Baker, P.R.2    Huang, L.3    Hansen, K.C.4    Allen, N.P.5    Rexach, M.6    Burlingame, A.L.7
  • 18
    • 34748907193 scopus 로고    scopus 로고
    • Collision-induced reporter fragmentations for identification of covalently modified peptides
    • Hung, C. W.; Schlosser, A.; Wei, J. H.; Lehmann, W. D. Collision-induced reporter fragmentations for identification of covalently modified peptides Anal. Bioanal. Chem. 2007, 389 (4) 1003-16
    • (2007) Anal. Bioanal. Chem. , vol.389 , Issue.4 , pp. 1003-1016
    • Hung, C.W.1    Schlosser, A.2    Wei, J.H.3    Lehmann, W.D.4
  • 19
    • 65349136930 scopus 로고    scopus 로고
    • Sequencing of the thirteen structurally isomeric quartets of N-terminal dipeptide motifs in peptides by collision-induced dissociation
    • Winter, D.; Lehmann, W. D. Sequencing of the thirteen structurally isomeric quartets of N-terminal dipeptide motifs in peptides by collision-induced dissociation Proteomics 2009, 9 (8) 2076-84
    • (2009) Proteomics , vol.9 , Issue.8 , pp. 2076-2084
    • Winter, D.1    Lehmann, W.D.2
  • 20
    • 4544368228 scopus 로고    scopus 로고
    • Formation of c1 fragment ions in collision-induced dissociation of glutamine-containing peptide ions: A tip for de novo sequencing
    • Lee, Y. J.; Lee, Y. M. Formation of c1 fragment ions in collision-induced dissociation of glutamine-containing peptide ions: a tip for de novo sequencing Rapid Commun. Mass Spectrom. 2004, 18 (18) 2069-76
    • (2004) Rapid Commun. Mass Spectrom. , vol.18 , Issue.18 , pp. 2069-2076
    • Lee, Y.J.1    Lee, Y.M.2
  • 21
    • 4444221838 scopus 로고    scopus 로고
    • Statistical and mechanistic approaches to understanding the gas-phase fragmentation behavior of methionine sulfoxide containing peptides
    • Reid, G. E.; Roberts, K. D.; Kapp, E. A.; Simpson, R. J. Statistical and mechanistic approaches to understanding the gas-phase fragmentation behavior of methionine sulfoxide containing peptides J. Proteome Res. 2004, 3 (4) 751-9
    • (2004) J. Proteome Res. , vol.3 , Issue.4 , pp. 751-759
    • Reid, G.E.1    Roberts, K.D.2    Kapp, E.A.3    Simpson, R.J.4
  • 22
    • 33747609610 scopus 로고    scopus 로고
    • Scrambling of sequence information in collision-induced dissociation of peptides
    • Harrison, A. G.; Young, A. B.; Bleiholder, C.; Suhai, S.; Paizs, B. Scrambling of sequence information in collision-induced dissociation of peptides J. Am. Chem. Soc. 2006, 128 (32) 10364-5
    • (2006) J. Am. Chem. Soc. , vol.128 , Issue.32 , pp. 10364-10365
    • Harrison, A.G.1    Young, A.B.2    Bleiholder, C.3    Suhai, S.4    Paizs, B.5
  • 25
    • 79955853722 scopus 로고    scopus 로고
    • On the relevance of peptide sequence permutations in shotgun proteomics studies
    • Yu, L.; Tan, Y.; Tsai, Y.; Goodlett, D. R.; Polfer, N. C. On the relevance of peptide sequence permutations in shotgun proteomics studies J. Proteome Res. 2011, 10 (5) 2409-16
    • (2011) J. Proteome Res. , vol.10 , Issue.5 , pp. 2409-2416
    • Yu, L.1    Tan, Y.2    Tsai, Y.3    Goodlett, D.R.4    Polfer, N.C.5
  • 26
    • 33144464594 scopus 로고    scopus 로고
    • Ion trap versus low-energy beam-type collision-induced dissociation of protonated ubiquitin ions
    • Xia, Y.; Liang, X. R.; McLuckey, S. A. Ion trap versus low-energy beam-type collision-induced dissociation of protonated ubiquitin ions Anal. Chem. 2006, 78 (4) 1218-27
    • (2006) Anal. Chem. , vol.78 , Issue.4 , pp. 1218-1227
    • Xia, Y.1    Liang, X.R.2    McLuckey, S.A.3
  • 27
    • 0001325675 scopus 로고    scopus 로고
    • A two-dimensional quadrupole ion trap mass spectrometer
    • Schwartz, J. C.; Senko, M. W.; Syka, J. E. P. A two-dimensional quadrupole ion trap mass spectrometer J. Am. Soc. Mass Spectrom. 2002, 13 (6) 659-69
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , Issue.6 , pp. 659-669
    • Schwartz, J.C.1    Senko, M.W.2    Syka, J.E.P.3
  • 28
    • 34548336772 scopus 로고    scopus 로고
    • Higher-energy C-trap dissociation for peptide modification analysis
    • Olsen, J. V.; Macek, B.; Lange, O.; Makarov, A.; Horning, S.; Mann, M. Higher-energy C-trap dissociation for peptide modification analysis Nat. Methods 2007, 4 (9) 709-12
    • (2007) Nat. Methods , vol.4 , Issue.9 , pp. 709-712
    • Olsen, J.V.1    MacEk, B.2    Lange, O.3    Makarov, A.4    Horning, S.5    Mann, M.6
  • 30
    • 84868309732 scopus 로고    scopus 로고
    • Achieving increased coverage in global proteomics survey experiments using higher-energy collisional dissociation (HCD) on a linear ion trap mass spectrometer.
    • Thermo Fisher Scientific: San Jose, CA
    • Horner, J. A.; Remes, P.; Biringer, R.; Huhmer, A.; Specht, A. Achieving increased coverage in global proteomics survey experiments using higher-energy collisional dissociation (HCD) on a linear ion trap mass spectrometer. Application Note 538; Thermo Fisher Scientific: San Jose, CA, 2011.
    • (2011) Application Note 538
    • Horner, J.A.1    Remes, P.2    Biringer, R.3    Huhmer, A.4    Specht, A.5
  • 32
    • 57449099068 scopus 로고    scopus 로고
    • Precision proteomics: The case for high resolution and high mass accuracy
    • Mann, M.; Kelleher, N. L. Precision proteomics: the case for high resolution and high mass accuracy Proc. Natl. Acad. Sci. U. S. A. 2008, 105 (47) 18132-8
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , Issue.47 , pp. 18132-18138
    • Mann, M.1    Kelleher, N.L.2
  • 35
    • 79951635872 scopus 로고    scopus 로고
    • Improved precision of iTRAQ and TMT quantification by an axial extraction field in an Orbitrap HCD cell
    • Pichler, P.; Kocher, T.; Holzmann, J.; Mohring, T.; Ammerer, G.; Mechtler, K. Improved precision of iTRAQ and TMT quantification by an axial extraction field in an Orbitrap HCD cell Anal. Chem. 2011, 83 (4) 1469-74
    • (2011) Anal. Chem. , vol.83 , Issue.4 , pp. 1469-1474
    • Pichler, P.1    Kocher, T.2    Holzmann, J.3    Mohring, T.4    Ammerer, G.5    Mechtler, K.6
  • 36
    • 84868336980 scopus 로고    scopus 로고
    • Expert System for computer assisted annotation of MS/MS spectra
    • not supplied
    • Neuhauser, N.; Michalski, A.; Cox, J.; Mann, M. Expert System for computer assisted annotation of MS/MS spectra. Mol. Cell. Proteomics 2012, not supplied.
    • (2012) Mol. Cell. Proteomics
    • Neuhauser, N.1    Michalski, A.2    Cox, J.3    Mann, M.4
  • 37
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko, A.; Tomas, H.; Havlis, J.; Olsen, J. V.; Mann, M. In-gel digestion for mass spectrometric characterization of proteins and proteomes Nat. Protoc. 2006, 1 (6) 2856-60
    • (2006) Nat. Protoc. , vol.1 , Issue.6 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 38
    • 0037317228 scopus 로고    scopus 로고
    • Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • Rappsilber, J.; Ishihama, Y.; Mann, M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics Anal. Chem. 2003, 75 (3) 663-70
    • (2003) Anal. Chem. , vol.75 , Issue.3 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 39
    • 71549117585 scopus 로고    scopus 로고
    • Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome
    • Wisniewski, J. R.; Zougman, A.; Mann, M. Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome J. Proteome Res. 2009, 8 (12) 5674-8
    • (2009) J. Proteome Res. , vol.8 , Issue.12 , pp. 5674-5678
    • Wisniewski, J.R.1    Zougman, A.2    Mann, M.3
  • 40
    • 3242688830 scopus 로고    scopus 로고
    • Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns
    • Pinkse, M. W.; Uitto, P. M.; Hilhorst, M. J.; Ooms, B.; Heck, A. J. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns Anal. Chem. 2004, 76 (14) 3935-43
    • (2004) Anal. Chem. , vol.76 , Issue.14 , pp. 3935-3943
    • Pinkse, M.W.1    Uitto, P.M.2    Hilhorst, M.J.3    Ooms, B.4    Heck, A.J.5
  • 42
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 2008, 26 (12) 1367-72
    • (2008) Nat. Biotechnol. , vol.26 , Issue.12 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 43
  • 44
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka, R.; Gentleman, R. R: A language for data analysis and graphics J. Comput. Graphical Stat. 1996, 5 (3) 16
    • (1996) J. Comput. Graphical Stat. , vol.5 , Issue.3 , pp. 16
    • Ihaka, R.1    Gentleman, R.2
  • 45
    • 79953719716 scopus 로고    scopus 로고
    • More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
    • Michalski, A.; Cox, J.; Mann, M. More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS J. Proteome Res. 2011, 10 (4) 1785-93
    • (2011) J. Proteome Res. , vol.10 , Issue.4 , pp. 1785-1793
    • Michalski, A.1    Cox, J.2    Mann, M.3
  • 46
    • 77955455399 scopus 로고    scopus 로고
    • Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies
    • Houel, S.; Abernathy, R.; Renganathan, K.; Meyer-Arendt, K.; Ahn, N. G.; Old, W. M. Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies J. Proteome Res. 2010, 9 (8) 4152-60
    • (2010) J. Proteome Res. , vol.9 , Issue.8 , pp. 4152-4160
    • Houel, S.1    Abernathy, R.2    Renganathan, K.3    Meyer-Arendt, K.4    Ahn, N.G.5    Old, W.M.6
  • 47
    • 83055182134 scopus 로고    scopus 로고
    • Peptide identification by database search of mixture tandem mass spectra
    • Wang, J.; Bourne, P. E.; Bandeira, N. Peptide identification by database search of mixture tandem mass spectra Mol. Cell. Proteomics 2011, 10, 12
    • (2011) Mol. Cell. Proteomics , vol.10 , pp. 12
    • Wang, J.1    Bourne, P.E.2    Bandeira, N.3
  • 49
    • 80052674536 scopus 로고    scopus 로고
    • Software lock mass by two-dimensional minimization of peptide mass errors
    • Cox, J.; Michalski, A.; Mann, M. Software lock mass by two-dimensional minimization of peptide mass errors J. Am. Soc. Mass Spectrom. 2011, 22 (8) 1373-80
    • (2011) J. Am. Soc. Mass Spectrom. , vol.22 , Issue.8 , pp. 1373-1380
    • Cox, J.1    Michalski, A.2    Mann, M.3
  • 50
    • 80054713191 scopus 로고    scopus 로고
    • Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra
    • Ledvina, A. R.; Savitski, M. M.; Zubarev, A. R.; Good, D. M.; Coon, J. J.; Zubarev, R. A. Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra Anal. Chem. 2011, 83 (20) 7651-6
    • (2011) Anal. Chem. , vol.83 , Issue.20 , pp. 7651-7656
    • Ledvina, A.R.1    Savitski, M.M.2    Zubarev, A.R.3    Good, D.M.4    Coon, J.J.5    Zubarev, R.A.6
  • 51
    • 0028575316 scopus 로고
    • Error-tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann, M.; Wilm, M. Error-tolerant identification of peptides in sequence databases by peptide sequence tags Anal. Chem. 1994, 66 (24) 4390-9
    • (1994) Anal. Chem. , vol.66 , Issue.24 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 52
    • 56949090143 scopus 로고    scopus 로고
    • How much peptide sequence information is contained in ion trap tandem mass spectra?
    • Cox, J.; Hubner, N. C.; Mann, M. How much peptide sequence information is contained in ion trap tandem mass spectra? J. Am. Soc. Mass Spectrom. 2008, 19 (12) 1813-20
    • (2008) J. Am. Soc. Mass Spectrom. , vol.19 , Issue.12 , pp. 1813-1820
    • Cox, J.1    Hubner, N.C.2    Mann, M.3
  • 53
    • 0001481311 scopus 로고
    • Sequential mass-spectrometry applied to the study of the formation of internal fragment ions of protonated peptides
    • Ballard, K. D.; Gaskell, S. J. Sequential mass-spectrometry applied to the study of the formation of internal fragment ions of protonated peptides Int. J. Mass Spectrom. 1991, 111, 173-189
    • (1991) Int. J. Mass Spectrom. , vol.111 , pp. 173-189
    • Ballard, K.D.1    Gaskell, S.J.2
  • 54
    • 25144454028 scopus 로고    scopus 로고
    • Fragmentation reactions of deprotonated peptides containing proline. The proline effect
    • Harrison, A. G.; Young, A. B. Fragmentation reactions of deprotonated peptides containing proline. The proline effect J. Mass Spectrom. 2005, 40 (9) 1173-86
    • (2005) J. Mass Spectrom. , vol.40 , Issue.9 , pp. 1173-1186
    • Harrison, A.G.1    Young, A.B.2
  • 55
    • 0035298820 scopus 로고    scopus 로고
    • Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode
    • Steen, H.; Kuster, B.; Fernandez, M.; Pandey, A.; Mann, M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode Anal. Chem. 2001, 73 (7) 1440-8
    • (2001) Anal. Chem. , vol.73 , Issue.7 , pp. 1440-1448
    • Steen, H.1    Kuster, B.2    Fernandez, M.3    Pandey, A.4    Mann, M.5
  • 56
    • 67649213067 scopus 로고    scopus 로고
    • Phosphopeptide fragmentation and analysis by mass spectrometry
    • Boersema, P. J.; Mohammed, S.; Heck, A. J. Phosphopeptide fragmentation and analysis by mass spectrometry J. Mass Spectrom. 2009, 44 (6) 861-78
    • (2009) J. Mass Spectrom. , vol.44 , Issue.6 , pp. 861-878
    • Boersema, P.J.1    Mohammed, S.2    Heck, A.J.3
  • 57
    • 0002794845 scopus 로고
    • Collision-induced fragmentation of (M+H)+ ions of peptides-side-chain specific sequence ions
    • Johnson, R. S.; Martin, S. A.; Biemann, K. Collision-induced fragmentation of (M+H)+ ions of peptides-side-chain specific sequence ions Int. J. Mass Spectrom. 1988, 86, 137-54
    • (1988) Int. J. Mass Spectrom. , vol.86 , pp. 137-154
    • Johnson, R.S.1    Martin, S.A.2    Biemann, K.3
  • 58
    • 0034132537 scopus 로고    scopus 로고
    • The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer
    • Medzihradszky, K. F.; Campbell, J. M.; Baldwin, M. A.; Falick, A. M.; Juhasz, P.; Vestal, M. L.; Burlingame, A. L. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer Anal. Chem. 2000, 72 (3) 552-8
    • (2000) Anal. Chem. , vol.72 , Issue.3 , pp. 552-558
    • Medzihradszky, K.F.1    Campbell, J.M.2    Baldwin, M.A.3    Falick, A.M.4    Juhasz, P.5    Vestal, M.L.6    Burlingame, A.L.7
  • 59
    • 77956878367 scopus 로고    scopus 로고
    • Structural and mechanistic information on c(1) ion formation in collision-induced fragmentation of peptides
    • Winter, D.; Seidler, J.; Hahn, B.; Lehmann, W. D. Structural and mechanistic information on c(1) ion formation in collision-induced fragmentation of peptides J. Am. Soc. Mass Spectrom. 2010, 21 (10) 1814-20
    • (2010) J. Am. Soc. Mass Spectrom. , vol.21 , Issue.10 , pp. 1814-1820
    • Winter, D.1    Seidler, J.2    Hahn, B.3    Lehmann, W.D.4
  • 62
    • 79959988139 scopus 로고    scopus 로고
    • Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment
    • Kelstrup, C. D.; Hekmat, O.; Francavilla, C.; Olsen, J. V. Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment J. Proteome Res. 2011, 10 (7) 2937-48
    • (2011) J. Proteome Res. , vol.10 , Issue.7 , pp. 2937-2948
    • Kelstrup, C.D.1    Hekmat, O.2    Francavilla, C.3    Olsen, J.V.4
  • 63
    • 34247354641 scopus 로고    scopus 로고
    • Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry
    • Khatun, J.; Ramkissoon, K.; Giddings, M. C. Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry Anal. Chem. 2007, 79 (8) 3032-40
    • (2007) Anal. Chem. , vol.79 , Issue.8 , pp. 3032-3040
    • Khatun, J.1    Ramkissoon, K.2    Giddings, M.C.3
  • 64
    • 0037353846 scopus 로고    scopus 로고
    • Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides
    • Tabb, D. L.; Smith, L. L.; Breci, L. A.; Wysocki, V. H.; Lin, D.; Yates, J. R., 3rd Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides Anal. Chem. 2003, 75 (5) 1155-63
    • (2003) Anal. Chem. , vol.75 , Issue.5 , pp. 1155-1163
    • Tabb, D.L.1    Smith, L.L.2    Breci, L.A.3    Wysocki, V.H.4    Lin, D.5    Yates III, J.R.6


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