Erratum: Structure and binding of Mg(II) ions and di-metal bridge complexes with biological phosphates and phosphoranes (Journal of Biological Inorganic Chemistry (2004) 9 (807-817) DOI org/10.1007/s00775-004-0583-7);Structure and binding of Mg(II) ions and di-metal bridge complexes with biological phosphates and phosphoranes

Journal of Biological Inorganic Chemistry

Volumn 9, Issue 7, 2004, Pages 807-817

  Mayaan, Evelyn ^a   Range, Kevin ^a   York, Darrin M ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Ligand binding; Metal ions phosphate hydrolysis

Indexed keywords

BRIDGED COMPOUND; LIGAND; MAGNESIUM ION; METAL ION; PHOSPHATE; PHOSPHORANE DERIVATIVE; RNA; SOLVENT;

ARTICLE; BINDING AFFINITY; CATALYSIS; CHEMICAL INTERACTION; CHEMICAL STRUCTURE; COMPARATIVE STUDY; DENSITY FUNCTIONAL THEORY; ELECTROCHEMISTRY; GEOMETRY; PRIORITY JOURNAL; PROTON TRANSPORT; QUANTUM CHEMISTRY; SOLVATION;

EID: 84962359838     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-004-0608-2     Document Type: Erratum

References (88)

1. Cowan JA (1998) Chem Rev 98:1067-1087
2. Takagi Y, Ikeda Y, Taira K (2004) Top Curr Chem 232:213-251
3. Strajbl M, Shurki A, Warshel A (2003) Proc Natl Acad Sci USA 100:14834-14839
4. Florián J, Goodman MF, Warshel A (2003) J Am Chem Soc 125:8163-8177
5. Tiraboschi G, Gresh N, Giessner-Prettre C, Pedersen LG, Deerfield DW (2000) J Comput Chem 21:1011-1039
6. Mercero JM, Fowler JE, Ugalde JM (1998) J Phys Chem A 102:7006-7012
7. Florián J, Warshel A (1998) J Phys Chem B 102:719-734
8. Tole P, Lim C (1994) J Am Chem Soc 116:3922-3931
9. Dejaegere A, Liang XL, Karplus M (1994) J Chem Soc Faraday Trans 90:1763-1767
10. Range K, McGrath MJ, Lopez X, York DM (2004) J Am Chem Soc 126:1654-1665
11. Lopez X, Dejaegere A, Karplus M (2001) J Am Chem Soc 123:11755-11763
12. Mercero JM, Barrett P, Lam CW, Fowler JE, Ugalde JM, Pedersen LG (2000) J Comput Chem 21:43-51
13. Fothergill M, Goodman MF, Petruska J, Warshel A (1995) J Am Chem Soc 117:11619-11628
14. Cowan JA (1997) J Biol Inorg Chem 2:168-176
15. Torres RA, Himo F, Bruice TC, Noodleman L, Lovell T (2003) J Am Chem Soc 125:9861-9867
16. Schneider B, Kabeláč M, Hobza P (1996) J Am Chem Soc 118:12207-12217
17. Cunningham LA, Li J, Lu Y (1998) J Am Chem Soc 120:4518-4519
18. Maderia M, Hunsicker LM, DeRose VJ (2000) Biochemistry 39:12113-12120
19. Scott WG (1999) Q Rev Biophys 32:241-294
20. Wilson TJ, Lilley DMJ (2002) RNA 8:587-600
21. Hampel A, Cowan JA (1997) Chem Biol 4:513-517
22. Smith D, Pace NR (1993) Biochemistry 32:5273-5281
23. Eckstein F, Bramlage B (1999) Biopolymers 52:147-154
24. Åqvist J, Warshel A (1990) J Am Chem Soc 112:2860-2868
25. Shan S, Kravchuk AV, Piccirilli JA, Herschlag D (2001) Biochemistry 40:5161-5171
26. Takagi Y, Taira K (2002) J Am Chem Soc 124:3850-3852
27. Bruice TC, Tsubouchi A, Dempcy RO, Olson LP (1996) J Am Chem Soc 118:9867-9875
28. Peracchi A, Beigelman L, Scott EC, Uhlenbeck OC, Herschlag D (1997) J Biol Chem 272:26822-26826
29. Taraszka JA, Li J, Clemmer DE (2000) J Phys Chem B 104:4545-4551
30. Warshel A (2003) Annu Rev Biophys Biomol Struct 32:425-443
31. Warshel A, Levitt M (1976) J Mol Biol 103:227-249
32. Åqvist J, Warshel A (1993) Chem Rev 93:2523-2544
33. Gao J, Truhlar DG (2002) Annu Rev Phys Chem 53:467-505
34. Hutter MC, Reimers JR, Hush NS (1998) J Phys Chem B 102:8080-8090
35. Hutter MC, Hughes JM, Reimers JR, Hush NS (1999) J Phys Chem B 103:4906-4915
36. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Montgomery JA Jr, Vreven T, Kudin KN, Burant JC, Millam JM, Iyengar SS, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox JE, Hratchian HP, Cross JB, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Ayala PY, Morokuma K, Voth GA, Salvador P, Dannenberg JJ, Zakrzewski VG, Dapprich S, Daniels AD, Strain MC, Farkas O, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Ortiz JV, Cui Q, Baboul AG, Clifford S, Cioslowski J, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Gonzalez C, Pople JA (2003), Gaussian 03 R B01. Gaussian, Pittsburgh
37. Becke AD (1993) J Chem Phys 98:5648-5652
38. Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785-789
39. Helgaker T, Watson M, Handy NC (2000) J Chem Phys 113:9402-9409
40. Bauernschmitt R, Ahlrichs R (1996) J Chem Phys 104:9047-9052
41. Seeger R, Pople JA (1977) J Chem Phys 66:3045-3050
42. Curtiss LA, Raghavachari K, Trucks GW (1991) J Chem Phys 94:7221-7230
43. Tomasi J, Persico M (1994) Chem Rev 94:2027-2094
44. Cossi M, Barone V, Cammi R, Tomasi J (1996) Chem Phys Lett 255:327-335
45. Mineva T, Russo N, Sicilia E (1998) J Comput Chem 19:290-299
46. Cossi M, Scalmani G, Rega N, Barone V (2002) J Chem Phys 117:43-54
47. Barone V, Cossi M (1998) J Phys Chem A 102:1995-2001
48. Klamt A (1995) J Phys Chem 99:2224-2229
49. Andzelm J, Kölmel C, Klamt A (1995) J Chem Phys 103:9312-9320
50. Pierotti RA (1976) Chem Rev 76:717-726
51. Barone V, Cossi M, Tomasi J (1997) J Chem Phys 107:3210-3221
52. Floris FM, Tomasi J, Pascual-Ahuir JL (1991) J Comput Chem 12:784-791
53. Miertuš S, Scrocco E, Tomasi J (1981) Chem Phys 55:117-129
54. Cammi R, Tomasi J (1995) J Comput Chem 16:1449-1458
55. Klamt A, Schüürmann G (1993) J Chem Soc Perkin Trans 2 2:799-805
56. York DM, Karplus M (1999) J Phys Chem A 103:11060-11079
57. Cramer CJ (2002) Essentials of computational chemistry: theories, models. Wiley, Chichester
58. Bock CW, Kaufman A, Glusker JP (1994) Inorg Chem 33:419-427
59. Katz AK, Glusker JP, Beebe SA, Bock CW (1996) J Am Chem Soc 118:5752-5763
60. Pye CC, Rudolph WW (1998) J Phys Chem A 102:9933-9943
61. Pavlov M, Siegbahn PEM, Sandström M (1998) J Phys Chem A 102:219-228
62. Saito H, Suga H (2002) Nucleic Acids Res 30:5151-5159
63. Vaidya A, Suga H (2001) Biochemistry 40:7200-7210
64. Markley JC, Godde F, Sigurdsson ST (2001) Biochemistry 40:13849-13856
65. Dahm SC, Uhlenbeck OC (1991) Biochemistry 30:9464-9469
66. Marcus Y (1988) Chem Rev 88:1475-1498
67. Dudev T, Lim C (1999) J Phys Chem A 103:8093-8100
68. Reed AE, Weinstock RB, Weinhold F (1985) J Chem Phys 83:735-746
69. Zhou D, Taira K (1998) Chem Rev 98:991-1026
70. Lopez X, Schaefer M, Dejaegere A, Karplus M (2002) J Am Chem Soc 124:5010-5018
71. Holmes RR (1978) J Am Chem Soc 100:433-446
72. Lahiri SD, Zhang G, Dunaway-Mariano D, Allen, KN (2003) Science 299:2067-2071
73. Li J, Zhu T, Hawkins GD, Winget P, Liotard DA, Cramer CJ, Truhlar DG (1999) Theor Chem Acc 103:9-63
74. Hertweck M, Mueller MW (2001) Eur J Biochem 268:4610-4620
75. Pontius BW, Lott WB, von Hippel PH (1997) Proc Natl Acad Sci USA 94:2290-2294
76. Torres RA, Bruice TC (1998) Proc Natl Acad Sci USA 95:11077-11082
77. Sjögren AS, Pettersson E, Sjöberg BM, Strömberg R (1997) Nucleic Acids Res 25:648-653
78. Warnecke JM, Fürste J, Peter H, Wolf-Dietrich E, Volker A, Hartmann RK (1996) Proc Natl Acad Sci USA 93:8924-8928
79. Scott WG, Murray JB, Arnold JRP, Stoddard BL, Klug A (1996) Science 274:2065-2069
80. Murray JB, Szöke H, Szöke A, Scott WG (2000) Mol Cell 5:279-287
81. Murray JB, Terwey DP, Maloney L, Karpeisky A, Usman N, Beigelman L, Scott WG (1998) Cell 92:665-673
82. Murray JB, Dunham CM, Scott WG (2002) J Mol Biol 315:121-130
83. Zhou D, Zhang L, Taira K (1997) Proc Natl Acad Sci USA 94:14343-14348
84. Kuimelis RG, McLaughlin LW (1996) Biochemistry 35:5308-5317
85. Murray JB, Scott WG (2000) J Mol Biol 296:33-41
86. Murray JB, Scott WG (2000) J Mol Biol 304:681
87. Hermann T, Auffinger P, Scott WG, Westhof E (1997) Nucleic Acids Res 25:3421-3427
88. Hermann T, Auffinger P, Westhof E (1998) Eur Biophys J 27:153-165