-
1
-
-
84892142922
-
Computer science: The learning machines
-
24402264, .;()
-
Jones N, Computer science: The learning machines. Nature. 2014;505(7482):146. doi: 10.1038/505146a24402264
-
(2014)
Nature
, vol.505
, Issue.7482
, pp. 146
-
-
Jones, N.1
-
2
-
-
84155170973
-
Joint analysis of demography and selection in population genetics: where do we stand and where could we go?
-
.;():
-
Li J, Li H, Jakobsson M, Li S, Sjödin P, Lascoux M, Joint analysis of demography and selection in population genetics: where do we stand and where could we go?Molecular Ecology. 2012;21(1):28–44.
-
(2012)
Molecular Ecology
, vol.21
, Issue.1
, pp. 28-44
-
-
Li, J.1
Li, H.2
Jakobsson, M.3
Li, S.4
Sjödin, P.5
Lascoux, M.6
-
3
-
-
84871785145
-
Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population
-
23150605, .;():
-
Duchen P, Živković D, Hutter S, Stephan W, Laurent S, Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population. Genetics. 2013;193(1):291–301. doi: 10.1534/genetics.112.14591223150605
-
(2013)
Genetics
, vol.193
, Issue.1
, pp. 291-301
-
-
Duchen, P.1
Živković, D.2
Hutter, S.3
Stephan, W.4
Laurent, S.5
-
4
-
-
60149111297
-
Inferring the Strength of Selection in Drosophila under Complex Demographic Models
-
19033258, .;():
-
González J, Macpherson JM, Messer PW, Petrov DA, Inferring the Strength of Selection in Drosophila under Complex Demographic Models. Molecular Biology and Evolution. 2009;26(3):513–526. doi: 10.1093/molbev/msn27019033258
-
(2009)
Molecular Biology and Evolution
, vol.26
, Issue.3
, pp. 513-526
-
-
González, J.1
Macpherson, J.M.2
Messer, P.W.3
Petrov, D.A.4
-
5
-
-
67651050074
-
Pervasive natural selection in the Drosophila genome?
-
19503600, .;()
-
Sella G, Petrov DA, Przeworski M, Andolfatto P, Pervasive natural selection in the Drosophila genome?PLoS Genetics. 2009;5(6):e1000495. doi: 10.1371/journal.pgen.100049519503600
-
(2009)
PLoS Genetics
, vol.5
, Issue.6
, pp. 1000495
-
-
Sella, G.1
Petrov, D.A.2
Przeworski, M.3
Andolfatto, P.4
-
6
-
-
84924966448
-
The Drosophila Genome Nexus: a population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population
-
25631317, ..;():
-
Lack JB, Cardeno CM, Crepeau MW, Taylor W, Corbett-Detig RB, Stevens KA, et al. The Drosophila Genome Nexus: a population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population. Genetics. 2015;199(4):1229–1241. doi: 10.1534/genetics.115.17466425631317
-
(2015)
Genetics
, vol.199
, Issue.4
, pp. 1229-1241
-
-
Lack, J.B.1
Cardeno, C.M.2
Crepeau, M.W.3
Taylor, W.4
Corbett-Detig, R.B.5
Stevens, K.A.6
-
7
-
-
77955759338
-
Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations
-
20407129, .;:
-
Pavlidis P, Jensen JD, Stephan W, Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics. 2010;185:907–922. doi: 10.1534/genetics.110.11645920407129
-
(2010)
Genetics
, vol.185
, pp. 907-922
-
-
Pavlidis, P.1
Jensen, J.D.2
Stephan, W.3
-
8
-
-
84883252048
-
SweeD: likelihood-based detection of selective sweeps in thousands of genomes
-
23777627, .;():
-
Pavlidis P, Živković D, Stamatakis A, Alachiotis N, SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Molecular Biology and Evolution. 2013;30(9):2224–2224. doi: 10.1093/molbev/mst11223777627
-
(2013)
Molecular Biology and Evolution
, vol.30
, Issue.9
, pp. 2224
-
-
Pavlidis, P.1
Živković, D.2
Stamatakis, A.3
Alachiotis, N.4
-
9
-
-
84883794892
-
Learning natural selection from the site frequency spectrum
-
23770700, .;:
-
Ronen R, Udpa N, Halperin E, Bafna V, Learning natural selection from the site frequency spectrum. Genetics. 2013;195:181–193. doi: 10.1534/genetics.113.15258723770700
-
(2013)
Genetics
, vol.195
, pp. 181-193
-
-
Ronen, R.1
Udpa, N.2
Halperin, E.3
Bafna, V.4
-
10
-
-
78951472188
-
Distinguishing positive selection from neutral evolution: boosting the performance of summary statistics
-
21041556, .;:
-
Lin K, Li H, Schlötterer C, Futschik A, Distinguishing positive selection from neutral evolution: boosting the performance of summary statistics. Genetics. 2011;187:229–244. doi: 10.1534/genetics.110.12261421041556
-
(2011)
Genetics
, vol.187
, pp. 229-244
-
-
Lin, K.1
Li, H.2
Schlötterer, C.3
Futschik, A.4
-
11
-
-
84878616246
-
A fast estimate for the population recombination rate based on regression
-
23589457, .;:
-
Lin K, Futschik A, Li H, A fast estimate for the population recombination rate based on regression. Genetics. 2013;194:473–484. doi: 10.1534/genetics.113.15020123589457
-
(2013)
Genetics
, vol.194
, pp. 473-484
-
-
Lin, K.1
Futschik, A.2
Li, H.3
-
12
-
-
84950272772
-
Hierarchical Boosting: a machine-learning framework to detect and classify hard selective sweeps in human populations
-
26315912, ..;In pres
-
Pybus M, Luisi P, Dall’Olio G, Uzkundun M, Laayouni H, Bertranpetit J, et al. Hierarchical Boosting: a machine-learning framework to detect and classify hard selective sweeps in human populations. Bioinformatics. 2015;In press. doi: 10.1093/bioinformatics/btv49326315912
-
(2015)
Bioinformatics
-
-
Pybus, M.1
Luisi, P.2
Dall’Olio, G.3
Uzkundun, M.4
Laayouni, H.5
Bertranpetit, J.6
-
13
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
21753753, .;:
-
Li H, Durbin R, Inference of human population history from individual whole-genome sequences. Nature. 2011;475:493–496. doi: 10.1038/nature1023121753753
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
14
-
-
84879621036
-
Estimating variable effective population sizes from multiple genomes: A sequentially Markov conditional sampling distribution approach
-
23608192, .;():
-
Sheehan S, Harris K, Song YS, Estimating variable effective population sizes from multiple genomes: A sequentially Markov conditional sampling distribution approach. Genetics. 2013;194(3):647–662. doi: 10.1534/genetics.112.14909623608192
-
(2013)
Genetics
, vol.194
, Issue.3
, pp. 647-662
-
-
Sheehan, S.1
Harris, K.2
Song, Y.S.3
-
15
-
-
84962082415
-
-
Steinrücken M, Kamm JA, Song YS. Inference of complex population histories using whole-genome sequences from multiple populations; 2015. BioRxiv preprin
-
Steinrücken M, Kamm JA, Song YS. Inference of complex population histories using whole-genome sequences from multiple populations; 2015. BioRxiv preprint, http://dx.doi.org/10.1101/026591.
-
-
-
-
16
-
-
84905572361
-
Inferring human population size and separation history from multiple genome sequences
-
24952747, .;:
-
Schiffels S, Durbin R, Inferring human population size and separation history from multiple genome sequences. Nature Genetics. 2014;46:919–925. doi: 10.1038/ng.301524952747
-
(2014)
Nature Genetics
, vol.46
, pp. 919-925
-
-
Schiffels, S.1
Durbin, R.2
-
17
-
-
0034086970
-
Detecting bottlenecks and selective sweeps from DNA sequence polymorphism
-
10835415, .;:
-
Galtier N, Depaulis F, Barton NH, Detecting bottlenecks and selective sweeps from DNA sequence polymorphism. Genetics. 2000;155:981–987. 10835415
-
(2000)
Genetics
, vol.155
, pp. 981-987
-
-
Galtier, N.1
Depaulis, F.2
Barton, N.H.3
-
18
-
-
83455243192
-
Quantifying the variation in the effective population size within a genome
-
21954163, .;:
-
Gossmann TI, Woolfit M, Eyre-Walker A, Quantifying the variation in the effective population size within a genome. Genetics. 2011;189:1389–1402. doi: 10.1534/genetics.111.13265421954163
-
(2011)
Genetics
, vol.189
, pp. 1389-1402
-
-
Gossmann, T.I.1
Woolfit, M.2
Eyre-Walker, A.3
-
19
-
-
0032735986
-
Population growth of human Y chromosomes: a study of Y chromosome microsatellites
-
10605120, .;():
-
Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW, Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Molecular Biology and Evolution. 1999;16(12):1791–1798. doi: 10.1093/oxfordjournals.molbev.a02609110605120
-
(1999)
Molecular Biology and Evolution
, vol.16
, Issue.12
, pp. 1791-1798
-
-
Pritchard, J.K.1
Seielstad, M.T.2
Perez-Lezaun, A.3
Feldman, M.W.4
-
20
-
-
0036964474
-
Approximate Bayesian Computation in Population Genetics
-
12524368, .;():
-
Beaumont MA, Zhang W, Balding DJ, Approximate Bayesian Computation in Population Genetics. Genetics. 2002;162(4):2025–2035. 12524368
-
(2002)
Genetics
, vol.162
, Issue.4
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
21
-
-
34948847222
-
A new approach to estimate parameters of speciation models with application to apes
-
17712021, .;():
-
Becquet C, Przeworski M, A new approach to estimate parameters of speciation models with application to apes. Genome Res. 2007;17(10):1505–19. doi: 10.1101/gr.640970717712021
-
(2007)
Genome Res
, vol.17
, Issue.10
, pp. 1505-1519
-
-
Becquet, C.1
Przeworski, M.2
-
22
-
-
52949128377
-
An approximate Bayesian estimator suggests strong, recurrent selective sweeps in Drosophila
-
18802463, .;()
-
Jensen JD, Thornton KR, Andolfatto P, An approximate Bayesian estimator suggests strong, recurrent selective sweeps in Drosophila. PLoS Genetics. 2008;4(9):e1000198. doi: 10.1371/journal.pgen.100019818802463
-
(2008)
PLoS Genetics
, vol.4
, Issue.9
, pp. 1000198
-
-
Jensen, J.D.1
Thornton, K.R.2
Andolfatto, P.3
-
23
-
-
84868152411
-
Distinguishing between selective sweeps from standing variation and from a de novo mutation
-
23071458, .;()
-
Peter BM, Huerta-Sanchez E, Nielsen R, Distinguishing between selective sweeps from standing variation and from a de novo mutation. PLoS Genetics. 2012;8(10):e1003011. doi: 10.1371/journal.pgen.100301123071458
-
(2012)
PLoS Genetics
, vol.8
, Issue.10
, pp. 1003011
-
-
Peter, B.M.1
Huerta-Sanchez, E.2
Nielsen, R.3
-
24
-
-
0346734143
-
Markov chain Monte Carlo without likelihoods
-
14663152, .;():
-
Marjoram P, Molitor J, Plagnol V, Tavare S, Markov chain Monte Carlo without likelihoods. PNAS. 2003;100(26):15324–8. doi: 10.1073/pnas.030689910014663152
-
(2003)
PNAS
, vol.100
, Issue.26
, pp. 15324-15328
-
-
Marjoram, P.1
Molitor, J.2
Plagnol, V.3
Tavare, S.4
-
26
-
-
51449104123
-
Approximately sufficient statistics and Bayesian computation
-
18764775, .;()
-
Joyce P, Marjoram P, Approximately sufficient statistics and Bayesian computation. Statistical Applications in Genetics and Molecular Biology. 2008;7(1):Article26. doi: 10.2202/1544-6115.138918764775
-
(2008)
Statistical Applications in Genetics and Molecular Biology
, vol.7
, Issue.1
, pp. 26
-
-
Joyce, P.1
Marjoram, P.2
-
27
-
-
71249121103
-
Adaptive approximate Bayesian computation
-
.;():
-
Beaumont MA, Cornuet JM, Marin JM, Robert CP, Adaptive approximate Bayesian computation. Biometrika. 2009;96(4):983–990. doi: 10.1093/biomet/asp052
-
(2009)
Biometrika
, vol.96
, Issue.4
, pp. 983-990
-
-
Beaumont, M.A.1
Cornuet, J.M.2
Marin, J.M.3
Robert, C.P.4
-
28
-
-
73549122582
-
Non-linear regression models for Approximate Bayesian Computation
-
.;():
-
Blum MGB, François O, Non-linear regression models for Approximate Bayesian Computation. Statistics and Computing. 2010;20(1):63–73. doi: 10.1007/s11222-009-9116-0
-
(2010)
Statistics and Computing
, vol.20
, Issue.1
, pp. 63-73
-
-
Blum, M.G.B.1
François, O.2
-
29
-
-
77957728670
-
On optimal selection of summary statistics for approximate Bayesian computation
-
.;()
-
Nunes MA, Balding DJ, On optimal selection of summary statistics for approximate Bayesian computation. Statistical Applications in Genetics and Molecular Biology. 2010;9(1):34. doi: 10.2202/1544-6115.1576
-
(2010)
Statistical Applications in Genetics and Molecular Biology
, vol.9
, Issue.1
, pp. 34
-
-
Nunes, M.A.1
Balding, D.J.2
-
30
-
-
79957858782
-
Likelihood-free estimation of model evidence
-
..;():
-
Didelot X, Everitt RG, Johansen AM, Lawson DJ, et al. Likelihood-free estimation of model evidence. Bayesian Analysis. 2011;6(1):49–76. doi: 10.1214/11-BA602
-
(2011)
Bayesian Analysis
, vol.6
, Issue.1
, pp. 49-76
-
-
Didelot, X.1
Everitt, R.G.2
Johansen, A.M.3
Lawson, D.J.4
-
31
-
-
84861111043
-
Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation
-
.;():
-
Fearnhead P, Prangle D, Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation. Journal of the Royal Statistical Society: Series B (Statistical Methodology). 2012;74(3):419–474. doi: 10.1111/j.1467-9868.2011.01010.x
-
(2012)
Journal of the Royal Statistical Society: Series B (Statistical Methodology)
, vol.74
, Issue.3
, pp. 419-474
-
-
Fearnhead, P.1
Prangle, D.2
-
32
-
-
78149388939
-
Approximate Bayesian computation in evolution and ecology
-
.;:
-
Beaumont MA, Approximate Bayesian computation in evolution and ecology. Annual Review of Ecology, Evolution, and Systematics. 2010;41:379–406. doi: 10.1146/annurev-ecolsys-102209-144621
-
(2010)
Annual Review of Ecology, Evolution, and Systematics
, vol.41
, pp. 379-406
-
-
Beaumont, M.A.1
-
33
-
-
77955508453
-
Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model
-
20382835, .;():
-
Bazin E, Dawson KJ, Beaumont MA, Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model. Genetics. 2010;185(2):587–602. doi: 10.1534/genetics.109.11239120382835
-
(2010)
Genetics
, vol.185
, Issue.2
, pp. 587-602
-
-
Bazin, E.1
Dawson, K.J.2
Beaumont, M.A.3
-
34
-
-
0020118274
-
Neural networks and physical systems with emergent collective computational abilities
-
6953413, .;():
-
Hopfield JJ, Neural networks and physical systems with emergent collective computational abilities. PNAS. 1982;79(8):2554–2558. doi: 10.1073/pnas.79.8.25546953413
-
(1982)
PNAS
, vol.79
, Issue.8
, pp. 2554-2558
-
-
Hopfield, J.J.1
-
35
-
-
0024861871
-
Approximations by superpositions of sigmoidal functions
-
.;():
-
Cybenko G, Approximations by superpositions of sigmoidal functions. Mathematics of Control, Signals, and Systems. 1989;2(4):303–314. doi: 10.1007/BF02551274
-
(1989)
Mathematics of Control, Signals, and Systems
, vol.2
, Issue.4
, pp. 303-314
-
-
Cybenko, G.1
-
36
-
-
0025751820
-
Approximation Capabilities of Multilayer Feedforward Networks
-
.;():
-
Hornik K, Approximation Capabilities of Multilayer Feedforward Networks. Neural Networks. 1991;4(2):251–257. doi: 10.1016/0893-6080(91)90009-T
-
(1991)
Neural Networks
, vol.4
, Issue.2
, pp. 251-257
-
-
Hornik, K.1
-
37
-
-
33746600649
-
Reducing the dimensionality of data with neural networks
-
16873662, .;():
-
Hinton GE, Salakhutdinov RR, Reducing the dimensionality of data with neural networks. Science. 2006;313(5786):504–507. doi: 10.1126/science.112764716873662
-
(2006)
Science
, vol.313
, Issue.5786
, pp. 504-507
-
-
Hinton, G.E.1
Salakhutdinov, R.R.2
-
38
-
-
0022471098
-
Learning representations by back-propagating errors
-
.;():
-
Rumelhart DE, Hinton GE, Williams RJ, Learning representations by back-propagating errors. Nature. 1986;323(9):533–536. doi: 10.1038/323533a0
-
(1986)
Nature
, vol.323
, Issue.9
, pp. 533-536
-
-
Rumelhart, D.E.1
Hinton, G.E.2
Williams, R.J.3
-
39
-
-
80051654263
-
Acoustics
-
Mohamed Ar, Sainath TN, Dahl G, Ramabhadran B, Hinton GE, Picheny MA. Deep belief networks using discriminative features for phone recognition. In: Acoustics, Speech and Signal Processing (ICASSP), 2011 IEEE International Conference on; 2011. p. 5060–5063.
-
Speech and Signal Processing (ICASSP), 2011 IEEE International Conference on
, vol.2011
, pp. 5060-5063
-
-
-
42
-
-
84962090675
-
-
Hinton GE, Srivastava N, Krizhevsky A, Sutskever I, Salakhutdinov RR. Improving neural networks by preventing co-adaptation of feature detectors; 2012. ArXiv preprin
-
Hinton GE, Srivastava N, Krizhevsky A, Sutskever I, Salakhutdinov RR. Improving neural networks by preventing co-adaptation of feature detectors; 2012. ArXiv preprint, http://arxiv.org/abs/1207.0580.
-
-
-
-
44
-
-
84900523778
-
Space-time wiring specificity supports direction selectivity in the retina
-
24805243, ..;():
-
Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, et al. Space-time wiring specificity supports direction selectivity in the retina. Nature. 2014;509(7500):331–336. doi: 10.1038/nature1324024805243
-
(2014)
Nature
, vol.509
, Issue.7500
, pp. 331-336
-
-
Kim, J.S.1
Greene, M.J.2
Zlateski, A.3
Lee, K.4
Richardson, M.5
Turaga, S.C.6
-
45
-
-
84858841519
-
A unified multitask architecture for predicting local protein properties
-
22461885, .;()
-
Qi Y, Oja M, Weston J, Noble WS, A unified multitask architecture for predicting local protein properties. PLoS One. 2012;7(3):e32235. doi: 10.1371/journal.pone.003223522461885
-
(2012)
PLoS One
, vol.7
, Issue.3
, pp. 32235
-
-
Qi, Y.1
Oja, M.2
Weston, J.3
Noble, W.S.4
-
46
-
-
84902462761
-
Deep learning of the tissue-regulated splicing code
-
24931975, .;():
-
Leung MKK, Xiong HY, Lee LJ, Frey BJ, Deep learning of the tissue-regulated splicing code. Bioinformatics. 2014;30(12):i121–i129. doi: 10.1093/bioinformatics/btu27724931975
-
(2014)
Bioinformatics
, vol.30
, Issue.12
, pp. 121-129
-
-
Leung, M.K.K.1
Xiong, H.Y.2
Lee, L.J.3
Frey, B.J.4
-
47
-
-
84923276179
-
The human splicing code reveals new insights into the genetic determinants of disease
-
25525159, ..;(
-
Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Ryan et al. The human splicing code reveals new insights into the genetic determinants of disease. Science. 2015;347 (6218). doi: 10.1126/science.125480625525159
-
(2015)
Science
, vol.347
, Issue.6218
-
-
Xiong, H.Y.1
Alipanahi, B.2
Lee, L.J.3
Bretschneider, H.4
Merico, D.5
-
48
-
-
84938888109
-
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
-
26213851, .;:
-
Alipanahi B, Delong A, Weirauch MT, Frey BJ, Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning. Nature Biotechnology. 2015;33:831–838. doi: 10.1038/nbt.330026213851
-
(2015)
Nature Biotechnology
, vol.33
, pp. 831-838
-
-
Alipanahi, B.1
Delong, A.2
Weirauch, M.T.3
Frey, B.J.4
-
49
-
-
84962079156
-
-
Jiang B, Wu T, Zheng C, Wong WH. Learning Summary Statistic for Approximate Bayesian Computation via Deep Neural Network; 2015. ArXiv preprint
-
Jiang B, Wu T, Zheng C, Wong WH. Learning Summary Statistic for Approximate Bayesian Computation via Deep Neural Network; 2015. ArXiv preprint: http://arxiv.org/abs/1510.02175.
-
-
-
-
50
-
-
0031014291
-
Inferring Coalescence Times From DNA Sequence Data
-
9071603, .;:
-
Tavaré S, Balding DJ, Griffiths JRC, Donnelly P, Inferring Coalescence Times From DNA Sequence Data. Genetics. 1997;145:505–518. 9071603
-
(1997)
Genetics
, vol.145
, pp. 505-518
-
-
Tavaré, S.1
Balding, D.J.2
Griffiths, J.R.C.3
Donnelly, P.4
-
51
-
-
84869057921
-
A novel approach for choosing summary statistics in approximate Bayesian computation
-
22960215, .;():
-
Aeschbacher S, Beaumont MA, Futschik A, A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics. 2012;192(3):1027–1047. doi: 10.1534/genetics.112.14316422960215
-
(2012)
Genetics
, vol.192
, Issue.3
, pp. 1027-1047
-
-
Aeschbacher, S.1
Beaumont, M.A.2
Futschik, A.3
-
53
-
-
84878991573
-
A comparative review of dimension reduction methods in approximate Bayesian computation
-
.;():
-
Blum MGB, Nunes MA, Prangle D, Sisson SA, A comparative review of dimension reduction methods in approximate Bayesian computation. Statistical Science. 2013;28(2):189–208. doi: 10.1214/12-STS406
-
(2013)
Statistical Science
, vol.28
, Issue.2
, pp. 189-208
-
-
Blum, M.G.B.1
Nunes, M.A.2
Prangle, D.3
Sisson, S.A.4
-
54
-
-
77951177432
-
ABCtoolbox: a versatile toolkit for approximate Bayesian computations
-
20202215, .;
-
Wegmann D, Leuenberger C, Neuenschwander S, Excoffier L, ABCtoolbox: a versatile toolkit for approximate Bayesian computations. BMC Bioinformatics. 2010;11:116. doi: 10.1186/1471-2105-11-11620202215
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 116
-
-
Wegmann, D.1
Leuenberger, C.2
Neuenschwander, S.3
Excoffier, L.4
-
55
-
-
84962079148
-
-
Elyashiv E, Sattath S, Hu TT, Strustovsky A, McVicker G, Andolfatto P, et al. A genomic map of the effects of linked selection in; 2014. ArXiv preprin
-
Elyashiv E, Sattath S, Hu TT, Strustovsky A, McVicker G, Andolfatto P, et al. A genomic map of the effects of linked selection in Drosophila; 2014. ArXiv preprint, http://arxiv.org/abs/1408.5461.
-
-
-
-
56
-
-
77955381733
-
MSMS: A Coalescent Simulation Program Including Recombination, Demographic Structure, and Selection at a Single Locus
-
20591904, .;:
-
Ewing G, Hermisson J, MSMS: A Coalescent Simulation Program Including Recombination, Demographic Structure, and Selection at a Single Locus. Bioinformatics. 2010;26:2064–2065. doi: 10.1093/bioinformatics/btq32220591904
-
(2010)
Bioinformatics
, vol.26
, pp. 2064-2065
-
-
Ewing, G.1
Hermisson, J.2
-
57
-
-
33846047594
-
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
-
17203060, ..;:
-
Haag-Liautard C, Dorris M, Maside X, Macaskill S, Halligan DL, Charlesworth B, et al. Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature. 2007;445:82–85. doi: 10.1038/nature0538817203060
-
(2007)
Nature
, vol.445
, pp. 82-85
-
-
Haag-Liautard, C.1
Dorris, M.2
Maside, X.3
Macaskill, S.4
Halligan, D.L.5
Charlesworth, B.6
-
58
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
16299396, .;():
-
Thornton K, Andolfatto P, Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics. 2006;172(3):1607–1619. doi: 10.1534/genetics.105.04822316299396
-
(2006)
Genetics
, vol.172
, Issue.3
, pp. 1607-1619
-
-
Thornton, K.1
Andolfatto, P.2
-
59
-
-
22344444998
-
Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
-
15930491, .;:
-
Haddrill PR, Thornton KR, Charlesworth B, Andolfatto P, Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations. Genome Research. 2005;15:790–799. doi: 10.1101/gr.354100515930491
-
(2005)
Genome Research
, vol.15
, pp. 790-799
-
-
Haddrill, P.R.1
Thornton, K.R.2
Charlesworth, B.3
Andolfatto, P.4
-
60
-
-
0033828706
-
A Genome-Wide Departure From the Standard Neutral Model in Natural Populations of Drosophila
-
10978290, .;:
-
Andolfatto P, Przeworski M, A Genome-Wide Departure From the Standard Neutral Model in Natural Populations of Drosophila. Genetics. 2000;156:257–268. 10978290
-
(2000)
Genetics
, vol.156
, pp. 257-268
-
-
Andolfatto, P.1
Przeworski, M.2
-
61
-
-
84887482933
-
Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster
-
24218636, .;()
-
Glaser-Schmitt A, Catalán A, Parsch J, Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster. Philos Trans R Soc Lond B Biol Sci. 2013;368(1632):20130024. doi: 10.1098/rstb.2013.002424218636
-
(2013)
Philos Trans R Soc Lond B Biol Sci
, vol.368
, Issue.1632
, pp. 20130024
-
-
Glaser-Schmitt, A.1
Catalán, A.2
Parsch, J.3
-
62
-
-
26444439223
-
Cross-Species Comparison of Drosophila Male Accessory Gland Protein Genes
-
15944345, ..;():
-
Mueller JL, Ram KR, McGraw LA, Qazi MCB, Siggia ED, Clark AG, et al. Cross-Species Comparison of Drosophila Male Accessory Gland Protein Genes. Genetics. 2005;171(1):131–143. doi: 10.1534/genetics.105.04384415944345
-
(2005)
Genetics
, vol.171
, Issue.1
, pp. 131-143
-
-
Mueller, J.L.1
Ram, K.R.2
McGraw, L.A.3
Qazi, M.C.B.4
Siggia, E.D.5
Clark, A.G.6
-
63
-
-
6944221222
-
Kruppel is a gap gene in the intermediate germband insect Oncopeltus fasciatus and is required for development of both blastoderm and germband-derived segments
-
15342481, .;:
-
Liu PZ, Kaufman TC, Kruppel is a gap gene in the intermediate germband insect Oncopeltus fasciatus and is required for development of both blastoderm and germband-derived segments. Development. 2004;131:4567–4579. doi: 10.1242/dev.0131115342481
-
(2004)
Development
, vol.131
, pp. 4567-4579
-
-
Liu, P.Z.1
Kaufman, T.C.2
-
64
-
-
84901748239
-
Reproductive hacking: A male seminal protein acts through intact reproductive pathways in female Drosophila
-
25483253, .;():
-
Rubinstein CD, Wolfner MF, Reproductive hacking: A male seminal protein acts through intact reproductive pathways in female Drosophila. Fly. 2014;8(2):80–85. doi: 10.4161/fly.2839625483253
-
(2014)
Fly
, vol.8
, Issue.2
, pp. 80-85
-
-
Rubinstein, C.D.1
Wolfner, M.F.2
-
65
-
-
84902108866
-
The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila
-
24906153, .;():
-
Mohn F, Sienski G, Handler D, Brennecke J, The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila. Cell. 2014;157(6):1364–1379. doi: 10.1016/j.cell.2014.04.03124906153
-
(2014)
Cell
, vol.157
, Issue.6
, pp. 1364-1379
-
-
Mohn, F.1
Sienski, G.2
Handler, D.3
Brennecke, J.4
-
66
-
-
84962062761
-
-
Zhou H, Hu S, Matveev R, Yu Q, Li J, Khaitovich P, et al. A Chronological Atlas of Natural Selection in the Human Genome during the Past Half-million Years; 2015. BioRxiv preprin
-
Zhou H, Hu S, Matveev R, Yu Q, Li J, Khaitovich P, et al. A Chronological Atlas of Natural Selection in the Human Genome during the Past Half-million Years; 2015. BioRxiv preprint, http://dx.doi.org/10.1101/018929.
-
-
-
-
67
-
-
84929000155
-
Soft Shoulders Ahead: Spurious Signatures of Soft and Partial Selective Sweeps Result from Linked Hard Sweeps
-
25716978, .;():
-
Schrider DR, Mendes FK, Hahn MW, Kern AD, Soft Shoulders Ahead: Spurious Signatures of Soft and Partial Selective Sweeps Result from Linked Hard Sweeps. Genetics. 2015;200(1):267–284. doi: 10.1534/genetics.115.17491225716978
-
(2015)
Genetics
, vol.200
, Issue.1
, pp. 267-284
-
-
Schrider, D.R.1
Mendes, F.K.2
Hahn, M.W.3
Kern, A.D.4
-
68
-
-
84962089063
-
-
Ng A, Ngiam J, Foo CY, Mai Y, Suen C. Unsupervised Feature Learning and Deep Learning Tutorial; 201
-
Ng A, Ngiam J, Foo CY, Mai Y, Suen C. Unsupervised Feature Learning and Deep Learning Tutorial; 2013. http://ufldl.stanford.edu/wiki/index.php/UFLDL_Tutorial.
-
-
-
-
69
-
-
84962079822
-
-
Dodier R. LBFGS optimization routine, Java translation; 199
-
Dodier R. LBFGS optimization routine, Java translation; 1999. http://riso.sourceforge.net/.
-
-
-
-
70
-
-
55549115654
-
Genes mirror geography within Europe
-
18758442, ..;:
-
Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, et al. Genes mirror geography within Europe. Nature. 2008;456:98–101. doi: 10.1038/nature0733118758442
-
(2008)
Nature
, vol.456
, pp. 98-101
-
-
Novembre, J.1
Johnson, T.2
Bryc, K.3
Kutalik, Z.4
Boyko, A.R.5
Auton, A.6
-
71
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
2513255, .;():
-
Tajima F, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 1989;123(3):585–595. 2513255
-
(1989)
Genetics
, vol.123
, Issue.3
, pp. 585-595
-
-
Tajima, F.1
-
72
-
-
84924411185
-
Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps
-
25706129, .;()
-
Garud NR, Messer PW, Buzbas EO, Petrov DA, Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. PLoS Genetics. 2015;11(2):e1005004. doi: 10.1371/journal.pgen.100500425706129
-
(2015)
PLoS Genetics
, vol.11
, Issue.2
, pp. 1005004
-
-
Garud, N.R.1
Messer, P.W.2
Buzbas, E.O.3
Petrov, D.A.4
|