-
1
-
-
78650909427
-
Limitations of nextgeneration genome assembly
-
Alkan, C., S. Sajjadian, and E. E. Eichler, 2011 Limitations of nextgeneration genome assembly. Nat. Methods 8: 61–65.
-
(2011)
Nat. Methods
, vol.8
, pp. 61-65
-
-
Alkan, C.1
Sajjadian, S.2
Eichler, E.E.3
-
2
-
-
0036197624
-
Chromosomal inversion polymorphism in Afrotropical populations of Drosophila melanogaster
-
Aulard, S., J. R. David, and F. Lemeunier, 2002 Chromosomal inversion polymorphism in Afrotropical populations of Drosophila melanogaster. Genet. Res. 79: 49–63.
-
(2002)
Genet. Res
, vol.79
, pp. 49-63
-
-
Aulard, S.1
David, J.R.2
Lemeunier, F.3
-
3
-
-
3242760033
-
Non-African populations of Drosophila melanogaster have a unique origin
-
Baudry, E., B. Vinier, and M. Veuille, 2004 Non-African populations of Drosophila melanogaster have a unique origin. Mol. Biol. Evol. 21: 1482–1491.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 1482-1491
-
-
Baudry, E.1
Vinier, B.2
Veuille, M.3
-
4
-
-
0027374393
-
African and North American populations of Drosophila melanogaster are very different at the DNA level
-
Begun, D. J., and C. F. Aquadro, 1993 African and North American populations of Drosophila melanogaster are very different at the DNA level. Nature 365: 548–550.
-
(1993)
Nature
, vol.365
, pp. 548-550
-
-
Begun, D.J.1
Aquadro, C.F.2
-
5
-
-
84921811405
-
Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture
-
Bhatia, G., A. Tandon, N. Patterson, M. C. Aldrich, C. B. Ambrosone et al., 2014 Genome-wide scan of 29,141 African Americans finds no evidence of directional selection since admixture. Am. J. Hum. Genet. 95: 1–8.
-
(2014)
Am. J. Hum. Genet
, vol.95
, pp. 1-8
-
-
Bhatia, G.1
Tandon, A.2
Patterson, N.3
Aldrich, M.C.4
Ambrosone, C.B.5
-
6
-
-
0034126613
-
Sexual isolation of genetically differentiated sympatric populations of Drosophila melanogaster in Brazzaville, Congo: The first step towards speciation?
-
Capy, P., M. Veuille, M. Paillette, M. Jallon, J. M. Vouidibio et al., 2000 Sexual isolation of genetically differentiated sympatric populations of Drosophila melanogaster in Brazzaville, Congo: The first step towards speciation? Heredity 84: 468–475.
-
(2000)
Heredity
, vol.84
, pp. 468-475
-
-
Capy, P.1
Veuille, M.2
Paillette, M.3
Jallon, M.4
Vouidibio, J.M.5
-
7
-
-
0038708532
-
Genetic differentiation between American and European Drosophila melanogaster population could be attributed to admixture of African alleles. Mol. Biol
-
Caracristi, G., and C. Schlotterer, 2003 Genetic differentiation between American and European Drosophila melanogaster population could be attributed to admixture of African alleles. Mol. Biol. Evol. 20: 792–799.
-
(2003)
Evol
, vol.20
, pp. 792-799
-
-
Caracristi, G.1
Schlotterer, C.2
-
8
-
-
84872036603
-
Genome-wide fine-scale recombination rate variation in Drosophila melanogaster
-
Chan, A. H., P. A. Jenkins, and Y. S. Song, 2012 Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLoS Genet. 8: e1003090.
-
(2012)
Plos Genet
, vol.8
-
-
Chan, A.H.1
Jenkins, P.A.2
Song, Y.S.3
-
9
-
-
84903452150
-
Background selection as baseline for nucleotide variation across the Drosophila genome
-
Comeron, J. P., 2014 Background selection as baseline for nucleotide variation across the Drosophila genome. PLoS Genet. 10: e1004434.
-
(2014)
Plos Genet
, vol.10
-
-
Comeron, J.P.1
-
10
-
-
84872022907
-
Population genomics of inversion polymorphisms in Drosophila melanogaster
-
Corbett-Detig, R. B., and D. L. Hartl, 2012 Population genomics of inversion polymorphisms in Drosophila melanogaster. PLoS Genet. 8: e1003056.
-
(2012)
Plos Genet
, vol.8
-
-
Corbett-Detig, R.B.1
Hartl, D.L.2
-
11
-
-
84866127755
-
Sequence-based detection and breakpoint assembly of polymorphic inversions
-
Corbett-Detig, R. B., C. Cardeno, and C. H. Langley, 2012 Sequence-based detection and breakpoint assembly of polymorphic inversions. Genetics 192: 131–137.
-
(2012)
Genetics
, vol.192
, pp. 131-137
-
-
Corbett-Detig, R.B.1
Cardeno, C.2
Langley, C.H.3
-
12
-
-
79955483667
-
A framework for variant discovery and genotyping using next-generation DNA sequencing data. Nat
-
DePristo, M., E. Banks, R. Poplin, K. Garimella, J. Maguire et al., 2011 A framework for variant discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43: 491-498.
-
(2011)
Genet
, vol.43
, pp. 491-498
-
-
Depristo, M.1
Banks, E.2
Poplin, R.3
Garimella, K.4
Maguire, J.5
-
13
-
-
84871785145
-
Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population
-
Duchen, P., D. Zivkovic, S. Hutter, W. Stephan, and S. Laurent, 2013 Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population. Genetics 193: 291–301.
-
(2013)
Genetics
, vol.193
, pp. 291-301
-
-
Duchen, P.1
Zivkovic, D.2
Hutter, S.3
Stephan, W.4
Laurent, S.5
-
14
-
-
84901315024
-
The episode of genetic drift defining the migration of humans out of Africa is derived from a large east African population
-
Elhassan, N., E. I. Gebremeskel, M. A. Elnour, D. Isabirye, J. Okello et al., 2014 The episode of genetic drift defining the migration of humans out of Africa is derived from a large east African population. PLoS ONE 9: e97674.
-
(2014)
Plos ONE
, vol.9
-
-
Elhassan, N.1
Gebremeskel, E.I.2
Elnour, M.A.3
Isabirye, D.4
Okello, J.5
-
16
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Genomes Project Consortium
-
1000 Genomes Project Consortium et al., 2010 A map of human genome variation from population-scale sequencing. Nature 467: 1061–1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
17
-
-
0000149737
-
A comparison of the effect of lethal and detrimental chromosomes from Drosophila populations
-
Greenberg, R., and J. F. Crow, 1960 A comparison of the effect of lethal and detrimental chromosomes from Drosophila populations. Genetics 45: 1153–1168.
-
(1960)
Genetics
, vol.45
, pp. 1153-1168
-
-
Greenberg, R.1
Crow, J.F.2
-
18
-
-
22344444998
-
Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
-
Haddrill, P. R., K. R. Thornton, B. Charlesworth, and P. Andolfatto, 2005 Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations. Genome Res. 15: 790–799.
-
(2005)
Genome Res
, vol.15
, pp. 790-799
-
-
Haddrill, P.R.1
Thornton, K.R.2
Charlesworth, B.3
Andolfatto, P.4
-
19
-
-
33745612972
-
Ubiquitous selective constraints in the Drosophila genome revealed by a genomewide interspecies comparison
-
Halligan, D. L., and P. D. Keightley, 2006 Ubiquitous selective constraints in the Drosophila genome revealed by a genomewide interspecies comparison. Genome Res. 16: 875–884.
-
(2006)
Genome Res
, vol.16
, pp. 875-884
-
-
Halligan, D.L.1
Keightley, P.D.2
-
20
-
-
58549086375
-
Revisiting the impact of inversion in evolution: From population genetic markers to drivers of adaptive shifts and speciation
-
Hoffman, A. A., and L. H. Rieseberg, 2008 Revisiting the impact of inversion in evolution: From population genetic markers to drivers of adaptive shifts and speciation? Annu. Rev. Ecol. Evol. Syst. 39: 21–42.
-
(2008)
Annu. Rev. Ecol. Evol. Syst
, vol.39
, pp. 21-42
-
-
Hoffman, A.A.1
Rieseberg, L.H.2
-
21
-
-
84904258306
-
Natural variation in genome architecture among 205 Drosophila melanogaster genetic reference pane lines
-
Huang, W., A. Massouras, Y. Inoue, J. Peiffer, M. Ramia et al., 2014 Natural variation in genome architecture among 205 Drosophila melanogaster genetic reference pane lines. Genome Res. 24: 1193–1208.
-
(2014)
Genome Res
, vol.24
, pp. 1193-1208
-
-
Huang, W.1
Massouras, A.2
Inoue, Y.3
Peiffer, J.4
Ramia, M.5
-
22
-
-
0026709389
-
Estimation of levels of gene flow from DNA sequence data
-
Hudson, R. R., M. Slatkin, and W. P. Madison, 1992 Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
-
(1992)
Genetics
, vol.132
, pp. 583-589
-
-
Hudson, R.R.1
Slatkin, M.2
Madison, W.P.3
-
23
-
-
0346991744
-
A microsatellite variability screen for positive selection associated with the ‘out of Africa’ habitat expansion of Drosophila melanogaster
-
Kauer, M. O., D. Dieringer, and C. Schlotterer, 2003 A microsatellite variability screen for positive selection associated with the ‘out of Africa’ habitat expansion of Drosophila melanogaster. Genetics 165: 1137–1148.
-
(2003)
Genetics
, vol.165
, pp. 1137-1148
-
-
Kauer, M.O.1
Dieringer, D.2
Schlotterer, C.3
-
24
-
-
84863880314
-
Properties and power of the Drosophila synthetic population resource for the routine dissection of complex traits
-
King, E. G., S. J. Macdonald, and A. D. Long, 2012 Properties and power of the Drosophila synthetic population resource for the routine dissection of complex traits. Genetics 191: 935–949.
-
(2012)
Genetics
, vol.191
, pp. 935-949
-
-
King, E.G.1
Macdonald, S.J.2
Long, A.D.3
-
25
-
-
33744466839
-
Chromosome inversions, local adaptation and speciation
-
Kirkpatrick, M., and N. Barton, 2006 Chromosome inversions, local adaptation and speciation. Genetics 173: 419–434.
-
(2006)
Genetics
, vol.173
, pp. 419-434
-
-
Kirkpatrick, M.1
Barton, N.2
-
27
-
-
0000792280
-
Historical biogeography of the Drosophila melanogaster species subgroup
-
Lachaise, D., M. L. Cariou, J. R. David, F. Lemeunier, L. Tsacas et al., 1988 Historical biogeography of the Drosophila melanogaster species subgroup. Evol. Biol. 22: 159–225.
-
(1988)
Evol. Biol
, vol.22
, pp. 159-225
-
-
Lachaise, D.1
Cariou, M.L.2
David, J.R.3
Lemeunier, F.4
Tsacas, L.5
-
28
-
-
79958190542
-
Circumventing heterozygosity: Sequencing the amplified genome of a single haploid Drosophila melanogaster embryo
-
Langley, C. H., M. Crepeau, C. Cardeno, R. Corbett-Detig, and K. Stevens, 2011 Circumventing heterozygosity: sequencing the amplified genome of a single haploid Drosophila melanogaster embryo. Genetics 188: 239–246.
-
(2011)
Genetics
, vol.188
, pp. 239-246
-
-
Langley, C.H.1
Crepeau, M.2
Cardeno, C.3
Corbett-Detig, R.4
Stevens, K.5
-
29
-
-
84866081815
-
Genomic variation in natural populations of Drosophila melanogaster
-
Langley, C. H., K. Stevens, C. Cardeno, Y. C. G. Lee, D. R. Schrider et al., 2012 Genomic variation in natural populations of Drosophila melanogaster. Genetics 192: 533–598.
-
(2012)
Genetics
, vol.192
, pp. 533-598
-
-
Langley, C.H.1
Stevens, K.2
Cardeno, C.3
Lee, Y.C.4
Schrider, D.R.5
-
30
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H., and R. Durbin, 2010 Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589–595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
31
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li, H., and R. Durbin, 2011 Inference of human population history from individual whole-genome sequences. Nature 475: 493–497.
-
(2011)
Nature
, vol.475
, pp. 493-497
-
-
Li, H.1
Durbin, R.2
-
32
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long, Q., F. A. Rabanal, D. Meng, C. D. Huber, A. Farlow et al., 2013 Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat. Genet. 45: 884–890.
-
(2013)
Nat. Genet
, vol.45
, pp. 884-890
-
-
Long, Q.1
Rabanal, F.A.2
Meng, D.3
Huber, C.D.4
Farlow, A.5
-
33
-
-
84877043348
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter, G., and M. Goodson, 2010 Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 18: 821–829.
-
(2010)
Genome Res
, vol.18
, pp. 821-829
-
-
Lunter, G.1
Goodson, M.2
-
34
-
-
84863012360
-
The Drosophila melanogaster Genetic Reference Panel
-
Mackay, T. F. C., S. Richards, E. A. Stone, A. Barbadilla, J. F. Ayroles et al., 2012 The Drosophila melanogaster Genetic Reference Panel. Nature 482: 173–178.
-
(2012)
Nature
, vol.482
, pp. 173-178
-
-
Mackay, T.1
Richards, S.2
Stone, E.A.3
Barbadilla, A.4
Ayroles, J.F.5
-
35
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A., M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis et al., 2010 The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20: 1297–1301.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1301
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
-
36
-
-
77951813504
-
Genome assembly quality: Assessment of and improvement using the neutral indel model
-
Meader, S., L. W. Hillier, D. Locke, C. P. Ponting, and G. Lunter, 2010 Genome assembly quality: assessment of and improvement using the neutral indel model. Genome Res. 20: 675-684.
-
(2010)
Genome Res
, vol.20
, pp. 675-684
-
-
Meader, S.1
Hillier, L.W.2
Locke, D.3
Ponting, C.P.4
Lunter, G.5
-
37
-
-
84872016646
-
Notes regarding the collection of African Drosophila melanogaster
-
Pool, J. E., 2009 Notes regarding the collection of African Drosophila melanogaster. Drosoph. Inf. Serv. 92: 130–134.
-
(2009)
Drosoph. Inf. Serv
, vol.92
, pp. 130-134
-
-
Pool, J.E.1
-
38
-
-
84872014607
-
Population genomics of Sub-Saharan Drosophila melanogaster: African diversity and non-African admixture
-
Pool, J. E., R. B. Corbett-Detig, R. P. Sugino, K. A. Stevens, C. M. Cardeno et al., 2012 Population genomics of Sub-Saharan Drosophila melanogaster: African diversity and non-African admixture. PLoS Genet. 8: e1003080.
-
(2012)
Plos Genet
, vol.8
-
-
Pool, J.E.1
Corbett-Detig, R.B.2
Sugino, R.P.3
Stevens, K.A.4
Cardeno, C.M.5
-
39
-
-
84865591846
-
A tale of three next generation sequencing platforms: Comparison of Ion Torrent, Pacific Bioscience and Illumina MiSeq sequencers
-
Quail, M. A., M. Smith, P. Coupland, T. D. Otto, S. R. Harris et al., 2012 A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Bioscience and Illumina MiSeq sequencers. BMC Genomics 13: 341.
-
(2012)
BMC Genomics
, vol.13
, pp. 341
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
Otto, T.D.4
Harris, S.R.5
-
40
-
-
84873560054
-
Comparison of sequencing platforms for single nucleotide variant calls in a human sample
-
Ratan, A., W. Miller, J. Guillory, J. Stinson, S. Seshagiri et al., 2013 Comparison of sequencing platforms for single nucleotide variant calls in a human sample. PLoS ONE 8: e55089.
-
(2013)
Plos ONE
, vol.8
-
-
Ratan, A.1
Miller, W.2
Guillory, J.3
Stinson, J.4
Seshagiri, S.5
-
41
-
-
84877278609
-
Sequencing plastform and library preparation choices impact viral metagenomes
-
Solonenko, S. A., J. C. Ignacio-Espinoza, A. Alberti, and C. Cruaud, S. Hallam et al., 2013 Sequencing plastform and library preparation choices impact viral metagenomes. BMC Genomics 14: 320.
-
(2013)
BMC Genomics
, vol.14
, pp. 320
-
-
Solonenko, S.A.1
Ignacio-Espinoza, J.C.2
Alberti, A.3
Cruaud, C.4
Hallam, S.5
-
42
-
-
84922059944
-
A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera
-
Wallberg, A., F. Han, G. Wellhagen, B. Dahle, M. Kawata et al., 2014 A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera. Nat. Genet. 46: 1081–1088.
-
(2014)
Nat. Genet
, vol.46
, pp. 1081-1088
-
-
Wallberg, A.1
Han, F.2
Wellhagen, G.3
Dahle, B.4
Kawata, M.5
|