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Volumn 129, Issue 7, 2016, Pages 1357-1372

Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes

(23)  Jeong, Young Min a   Kim, Namshin b   Ahn, Byung Ohg c   Oh, Mijin c   Chung, Won Hyong b   Chung, Hee a   Jeong, Seongmun b   Lim, Ki Byung d   Hwang, Yoon Jung e   Kim, Goon Bo f   Baek, Seunghoon f   Choi, Sang Bong f   Hyung, Dae Jin g   Lee, Seung Won g   Sohn, Seong Han c   Kwon, Soo Jin c   Jin, Mina c   Seol, Young Joo c   Chae, Won Byoung h   Choi, Keun Jin h   more..


Author keywords

[No Author keywords available]

Indexed keywords

GENETIC ENGINEERING;

EID: 84962027507     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-016-2708-0     Document Type: Article
Times cited : (104)

References (78)
  • 1
    • 0000750526 scopus 로고
    • The tribes of Cruciferae (Brassicaceae) in the southeastern United States
    • Al-Shehbaz I (1984) The tribes of Cruciferae (Brassicaceae) in the southeastern United States. J Arnold Arbor Harv Univ 65:343–373
    • (1984) J Arnold Arbor Harv Univ , vol.65 , pp. 343-373
    • Al-Shehbaz, I.1
  • 2
    • 84991910429 scopus 로고    scopus 로고
    • American Society of Agronomy, Madison
    • American Society of Agronomy (2009) Radishes: a new cover crop option. Crops and soils. American Society of Agronomy, Madison, pp 14–17
    • (2009) Radishes: a new cover crop option. Crops and soils , pp. 14-17
  • 3
    • 84867789440 scopus 로고    scopus 로고
    • A fully resolved chloroplast phylogeny of the brassica crops and wild relatives (Brassicaceae: Brassiceae): novel clades and potential taxonomic implications
    • Arias T, Pires J (2012) A fully resolved chloroplast phylogeny of the brassica crops and wild relatives (Brassicaceae: Brassiceae): novel clades and potential taxonomic implications. Taxon 61:980–988
    • (2012) Taxon , vol.61 , pp. 980-988
    • Arias, T.1    Pires, J.2
  • 4
    • 0036231391 scopus 로고    scopus 로고
    • Synthesis of somatic hybrids (RCBB) by fusing heat-tolerant Raphanus sativus (RR) and Brassica oleracea (CC) with Brassica nigra (BB)
    • Arumugam N, Mukhopadhyay A, Gupta V, Sodhi Y, Verma J, Pental D, Pradhan A (2002) Synthesis of somatic hybrids (RCBB) by fusing heat-tolerant Raphanus sativus (RR) and Brassica oleracea (CC) with Brassica nigra (BB). Plant Breed 121:168–170
    • (2002) Plant Breed , vol.121 , pp. 168-170
    • Arumugam, N.1    Mukhopadhyay, A.2    Gupta, V.3    Sodhi, Y.4    Verma, J.5    Pental, D.6    Pradhan, A.7
  • 5
    • 33645536890 scopus 로고    scopus 로고
    • Brassicaceae phylogeny and trichome evolution
    • COI: 1:CAS:528:DC%2BD28XjvFWjs78%3D, PID: 21646222
    • Beilstein M, Al-Shehbaz I, Kellogg E (2006) Brassicaceae phylogeny and trichome evolution. Am J Bot 93:607–619
    • (2006) Am J Bot , vol.93 , pp. 607-619
    • Beilstein, M.1    Al-Shehbaz, I.2    Kellogg, E.3
  • 6
    • 80053634856 scopus 로고    scopus 로고
    • Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica
    • COI: 1:CAS:528:DC%2BC3MXhsVWju7%2FJ
    • Chang S, Yang T, Du T, Huang Y, Chen J, Yan J, He J, Guan R (2011) Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica. BMC Genom 12:497
    • (2011) BMC Genom , vol.12 , pp. 497
    • Chang, S.1    Yang, T.2    Du, T.3    Huang, Y.4    Chen, J.5    Yan, J.6    He, J.7    Guan, R.8
  • 7
    • 84879482267 scopus 로고    scopus 로고
    • Deciphering the diploid ancestral genome of the mesohexaploid Brassica rapa
    • COI: 1:CAS:528:DC%2BC3sXhtFaksLzL, PID: 23653472
    • Cheng F, Mandáková T, Wu J, Xie Q, Lysak M, Wang X (2013a) Deciphering the diploid ancestral genome of the mesohexaploid Brassica rapa. Plant Cell 25:1541–1554
    • (2013) Plant Cell , vol.25 , pp. 1541-1554
    • Cheng, F.1    Mandáková, T.2    Wu, J.3    Xie, Q.4    Lysak, M.5    Wang, X.6
  • 8
    • 84860424914 scopus 로고    scopus 로고
    • Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa
    • Cheng F, Wu J, Fang L, Sun S, Liu B, Lin K, Bonnema G, Wang X (2013b) Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa. PLoS ONE 7:e36442
    • (2013) PLoS ONE , vol.7 , pp. e36442
    • Cheng, F.1    Wu, J.2    Fang, L.3    Sun, S.4    Liu, B.5    Lin, K.6    Bonnema, G.7    Wang, X.8
  • 9
    • 84922055001 scopus 로고    scopus 로고
    • Genome triplication drove the diversification of Brassica plants
    • Cheng F, Wu J, Wang X (2014) Genome triplication drove the diversification of Brassica plants. Hort Res 1:14024
    • (2014) Hort Res , vol.1 , pp. 14024
    • Cheng, F.1    Wu, J.2    Wang, X.3
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • COI: 1:CAS:528:DC%2BD2cXisF2ks7w%3D, PID: 15034147
    • Edgar R (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.1
  • 12
    • 42949086676 scopus 로고    scopus 로고
    • Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
    • PID: 18190707
    • Haas B, Salzberg S, Zhu W, Pertea M, Allen J, Orvis J, White O, Buell C, Wortman J (2008) Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol 9:R7
    • (2008) Genome Biol , vol.9 , pp. R7
    • Haas, B.1    Salzberg, S.2    Zhu, W.3    Pertea, M.4    Allen, J.5    Orvis, J.6    White, O.7    Buell, C.8    Wortman, J.9
  • 13
    • 0037008177 scopus 로고    scopus 로고
    • Beyond the Arabidopsis genome: opportunities for comparative genomics
    • COI: 1:CAS:528:DC%2BD38Xmtl2gsLg%3D, PID: 12177458
    • Hall A, Fiebig A, Preuss D (2002) Beyond the Arabidopsis genome: opportunities for comparative genomics. Plant Physiol 129:1439–1447
    • (2002) Plant Physiol , vol.129 , pp. 1439-1447
    • Hall, A.1    Fiebig, A.2    Preuss, D.3
  • 14
    • 33748552026 scopus 로고    scopus 로고
    • The evolution of California’s wild radish has resulted in the extinction of its progenitors
    • PID: 16892969
    • Hegde SG, Nason JD, Clegg JM, Ellstrand NC (2006) The evolution of California’s wild radish has resulted in the extinction of its progenitors. Evolution 60:1187–1197
    • (2006) Evolution , vol.60 , pp. 1187-1197
    • Hegde, S.G.1    Nason, J.D.2    Clegg, J.M.3    Ellstrand, N.C.4
  • 15
    • 84940304166 scopus 로고    scopus 로고
    • Centromere repeat DNA originated from Brassica rapa is detected in the centromere region of Raphanus sativus chromosomes
    • COI: 1:CAS:528:DC%2BC3sXisF2msbs%3D
    • Hwang Y-J, Yu H-J, Mun J-H, Ryu K, Park B-S, Lim K-B (2012) Centromere repeat DNA originated from Brassica rapa is detected in the centromere region of Raphanus sativus chromosomes. Kor J Hort Sci Technol 30:751–756
    • (2012) Kor J Hort Sci Technol , vol.30 , pp. 751-756
    • Hwang, Y.-J.1    Yu, H.-J.2    Mun, J.-H.3    Ryu, K.4    Park, B.-S.5    Lim, K.-B.6
  • 16
    • 84927172364 scopus 로고    scopus 로고
    • Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica
    • COI: 1:CAS:528:DC%2BC2cXht1egu7jP, PID: 25056003
    • Jeong Y-M, Chung W-H, Chung H, Kim N, Park B-S, Lim K-B, Yu H-J, Mun J-H (2014a) Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica. Theor Appl Genet 127:1975–1989
    • (2014) Theor Appl Genet , vol.127 , pp. 1975-1989
    • Jeong, Y.-M.1    Chung, W.-H.2    Chung, H.3    Kim, N.4    Park, B.-S.5    Lim, K.-B.6    Yu, H.-J.7    Mun, J.-H.8
  • 17
    • 84907513004 scopus 로고    scopus 로고
    • De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.)
    • COI: 1:CAS:528:DC%2BC2cXhsVWqurbL, PID: 25151309
    • Jeong Y-M, Chung W-H, Mun J-H, Kim N, Yu H-J (2014b) De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.). Gene 551:39–48
    • (2014) Gene , vol.551 , pp. 39-48
    • Jeong, Y.-M.1    Chung, W.-H.2    Mun, J.-H.3    Kim, N.4    Yu, H.-J.5
  • 18
    • 84982806737 scopus 로고    scopus 로고
    • The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.)
    • COI: 1:CAS:528:DC%2BC2MXitVajs7fJ, PID: 24937570
    • Jeong Y-M, Chung W-H, Choi AY, Mun J-H, Kim N, Yu H-J (2016) The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.). Mitochondrial DNA 27:941–942
    • (2016) Mitochondrial DNA , vol.27 , pp. 941-942
    • Jeong, Y.-M.1    Chung, W.-H.2    Choi, A.Y.3    Mun, J.-H.4    Kim, N.5    Yu, H.-J.6
  • 21
    • 84869104893 scopus 로고    scopus 로고
    • Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing
    • COI: 1:CAS:528:DC%2BC3sXltVSqsr0%3D, PID: 23163954
    • Kim B, Yu H-J, Park S-G, Shin J, Oh M, Kim N, Mun J-H (2012) Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing. BMC Plant Biol 12:218
    • (2012) BMC Plant Biol , vol.12 , pp. 218
    • Kim, B.1    Yu, H.-J.2    Park, S.-G.3    Shin, J.4    Oh, M.5    Kim, N.6    Mun, J.-H.7
  • 23
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
    • COI: 1:CAS:528:DC%2BD3cXnt1Cnsb0%3D, PID: 11018155
    • Koch M, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol 17:1483–1498
    • (2000) Mol Biol Evol , vol.17 , pp. 1483-1498
    • Koch, M.1    Haubold, B.2    Mitchell-Olds, T.3
  • 24
    • 84874989789 scopus 로고    scopus 로고
    • Yields, quality and nutritional parameters of radish (Raphanus sativus) cultivars when grown in organically in Czech Republic
    • COI: 1:CAS:528:DC%2BC3sXlsVWjtrg%3D
    • Kopta T, Pokluda R (2013) Yields, quality and nutritional parameters of radish (Raphanus sativus) cultivars when grown in organically in Czech Republic. Hort Sci 40:16–21
    • (2013) Hort Sci , vol.40 , pp. 16-21
    • Kopta, T.1    Pokluda, R.2
  • 25
    • 2942544417 scopus 로고    scopus 로고
    • Gene finding in novel genomes
    • PID: 15144565
    • Korf I (2004) Gene finding in novel genomes. BMC Bioinformatics 5:59
    • (2004) BMC Bioinformatics , vol.5 , pp. 59
    • Korf, I.1
  • 27
    • 79952437896 scopus 로고    scopus 로고
    • Developing stable progenies of xBrassicoraphanus, an intergeneric allopolyploid between Brassica rapa and Raphanus sativus, through induced mutation using microspore culture
    • PID: 21113703
    • Lee S-S, Lee S-A, Yang J, Kim J (2011) Developing stable progenies of xBrassicoraphanus, an intergeneric allopolyploid between Brassica rapa and Raphanus sativus, through induced mutation using microspore culture. Theor Appl Genet 122:885–891
    • (2011) Theor Appl Genet , vol.122 , pp. 885-891
    • Lee, S.-S.1    Lee, S.-A.2    Yang, J.3    Kim, J.4
  • 29
    • 80054711619 scopus 로고    scopus 로고
    • Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.)
    • COI: 1:CAS:528:DC%2BC3MXhtlaisLzL, PID: 21816873
    • Li F, Hasegawa Y, Saito M, Shirasawa S, Fukushima A, Ito T, Fujii H, Kishitani S, Kitashiba H, Nishio T (2011) Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.). DNA Res 18:401–411
    • (2011) DNA Res , vol.18 , pp. 401-411
    • Li, F.1    Hasegawa, Y.2    Saito, M.3    Shirasawa, S.4    Fukushima, A.5    Ito, T.6    Fujii, H.7    Kishitani, S.8    Kitashiba, H.9    Nishio, T.10
  • 32
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for inproved detection of transfer RNA genes in genomic sequence
    • COI: 1:CAS:528:DyaK2sXhvVahtrk%3D, PID: 9023104
    • Lowe T, Eddy S (1997) tRNAscan-SE: a program for inproved detection of transfer RNA genes in genomic sequence. Nucleic Acid Res 25:955–964
    • (1997) Nucleic Acid Res , vol.25 , pp. 955-964
    • Lowe, T.1    Eddy, S.2
  • 33
    • 42049117340 scopus 로고    scopus 로고
    • Genetic diversity of cultivated and wild radish and phylogenetic relationships among Raphanus and Brassica species revealed by the analysis of trnK/matK sequence
    • COI: 1:CAS:528:DC%2BD1cXmsFektL8%3D
    • Lu N, Yamane K, Ohnishi O (2008) Genetic diversity of cultivated and wild radish and phylogenetic relationships among Raphanus and Brassica species revealed by the analysis of trnK/matK sequence. Breed Sci 58:15–22
    • (2008) Breed Sci , vol.58 , pp. 15-22
    • Lu, N.1    Yamane, K.2    Ohnishi, O.3
  • 34
    • 35348901902 scopus 로고    scopus 로고
    • Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size
    • COI: 1:CAS:528:DC%2BD2sXht1SjsLrM, PID: 17720758
    • Lysak M, Cheung K, Kitschke M, Bures P (2007) Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size. Plant Physiol 145:402–410
    • (2007) Plant Physiol , vol.145 , pp. 402-410
    • Lysak, M.1    Cheung, K.2    Kitschke, M.3    Bures, P.4
  • 35
    • 79952592810 scopus 로고    scopus 로고
    • A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
    • PID: 21217122
    • Marçais G, Kingsford C (2011) A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics 27:764–770
    • (2011) Bioinformatics , vol.27 , pp. 764-770
    • Marçais, G.1    Kingsford, C.2
  • 36
    • 8244242233 scopus 로고
    • Intergeneric hybridization between Raphanus sativus L. and Brassica nigra Koch. and alloplasmic radish derivative
    • Matsuzawa Y, Sarashima M (1986) Intergeneric hybridization between Raphanus sativus L. and Brassica nigra Koch. and alloplasmic radish derivative. Breed Sci 36:122–130
    • (1986) Breed Sci , vol.36 , pp. 122-130
    • Matsuzawa, Y.1    Sarashima, M.2
  • 38
    • 84903648903 scopus 로고    scopus 로고
    • Consequences of whole-genome triplication as revealed by comparative genomic analyses of the wild radish Raphanus raphanistrum and three other Brassicaceae species
    • COI: 1:CAS:528:DC%2BC2cXhtFOhtrzL, PID: 24876251
    • Moghe G, Hufnagel D, Tang H, Xiao Y, Dworkin I, Town C, Conner J, Shiu S (2014) Consequences of whole-genome triplication as revealed by comparative genomic analyses of the wild radish Raphanus raphanistrum and three other Brassicaceae species. Plant Cell 26:1925–1937
    • (2014) Plant Cell , vol.26 , pp. 1925-1937
    • Moghe, G.1    Hufnagel, D.2    Tang, H.3    Xiao, Y.4    Dworkin, I.5    Town, C.6    Conner, J.7    Shiu, S.8
  • 42
    • 0000150298 scopus 로고
    • Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization
    • U N (1935) Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Jpn J Bot 7:389–452
    • (1935) Jpn J Bot , vol.7 , pp. 389-452
  • 43
    • 64549119821 scopus 로고    scopus 로고
    • Molecular systematics of Brassica and allied genera in subtribes Brassicinae, Raphaninae, Moricandiinae, and Cakilinae (Brassicaceae, tribe Brassiceae); the organization and evolution of ribosomal gene families
    • Nagpal R, Dar T, Raina S (2008) Molecular systematics of Brassica and allied genera in subtribes Brassicinae, Raphaninae, Moricandiinae, and Cakilinae (Brassicaceae, tribe Brassiceae); the organization and evolution of ribosomal gene families. Bot J Linn Soc 157:545–557
    • (2008) Bot J Linn Soc , vol.157 , pp. 545-557
    • Nagpal, R.1    Dar, T.2    Raina, S.3
  • 44
    • 84876105356 scopus 로고    scopus 로고
    • Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea
    • COI: 1:CAS:528:DC%2BC3sXhsVOrtLvM
    • Navabi Z-K, Huebert T, Sharpe A, O’Neill C, Bancroft I, Parkin IA (2013) Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea. BMC Genom 14:250
    • (2013) BMC Genom , vol.14 , pp. 250
    • Navabi, Z.-K.1    Huebert, T.2    Sharpe, A.3    O’Neill, C.4    Bancroft, I.5    Parkin, I.A.6
  • 45
    • 78651397694 scopus 로고    scopus 로고
    • The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome
    • COI: 1:CAS:528:DC%2BC3MXjsFWqug%3D%3D, PID: 21217804
    • Nelson M, Parkin I, Lydiate D (2011) The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome. Genome 54:33–41
    • (2011) Genome , vol.54 , pp. 33-41
    • Nelson, M.1    Parkin, I.2    Lydiate, D.3
  • 48
    • 41549133928 scopus 로고    scopus 로고
    • Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
    • Panjabi P, Jagannath A, Bisht N, Padmaja K, Sharma S, Gupta V, Pradhan A, Pental D (2008) Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genom 9:113
    • (2008) BMC Genom , vol.9 , pp. 113
    • Panjabi, P.1    Jagannath, A.2    Bisht, N.3    Padmaja, K.4    Sharma, S.5    Gupta, V.6    Pradhan, A.7    Pental, D.8
  • 49
    • 84901659525 scopus 로고    scopus 로고
    • RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns
    • Paritosh K, Gupta V, Yadava S, Singh P, Pradhan A, Pental D (2014) RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns. BMC Genom 15:396
    • (2014) BMC Genom , vol.15 , pp. 396
    • Paritosh, K.1    Gupta, V.2    Yadava, S.3    Singh, P.4    Pradhan, A.5    Pental, D.6
  • 50
    • 84948738085 scopus 로고    scopus 로고
    • Brassica and its close allies: cytogenetics and evolution
    • Jules J, (ed), 31, Wiley, London
    • Prakash S, Bhat S, Quiros C, Kirti P, Chopra V (2009) Brassica and its close allies: cytogenetics and evolution. In: Jules J (ed) Plant breed reviews, vol 31. Wiley, London, pp 21–187
    • (2009) Plant breed reviews , pp. 21-187
    • Prakash, S.1    Bhat, S.2    Quiros, C.3    Kirti, P.4    Chopra, V.5
  • 51
    • 33751014556 scopus 로고    scopus 로고
    • The ABC’s of comparative genomics in the Brassicaceae: building blocks of crucifer genomes
    • COI: 1:CAS:528:DC%2BD28XhtFeru7%2FE, PID: 17029932
    • Schranz ME, Lysak MA, Mitchell-Olds T (2006) The ABC’s of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends Plant Sci 11:535–542
    • (2006) Trends Plant Sci , vol.11 , pp. 535-542
    • Schranz, M.E.1    Lysak, M.A.2    Mitchell-Olds, T.3
  • 52
    • 84874285759 scopus 로고    scopus 로고
    • RadishBase: a database for genomics and genetics of radish
    • COI: 1:CAS:528:DC%2BC3sXisVaisL0%3D, PID: 23239846
    • Shen D, Sun HH, Huang MY, Zheng Y, Li XX, Fei ZJ (2013) RadishBase: a database for genomics and genetics of radish. Plant Cell Physiol 54:e3
    • (2013) Plant Cell Physiol , vol.54 , pp. e3
    • Shen, D.1    Sun, H.H.2    Huang, M.Y.3    Zheng, Y.4    Li, X.X.5    Fei, Z.J.6
  • 53
    • 0001282689 scopus 로고
    • Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs): 2. Preliminary analysis of subspecies within B. rapa (syn. campestris) and B. oleracea
    • COI: 1:CAS:528:DyaL1MXlsVGqsA%3D%3D, PID: 24232282
    • Song K, Osborn T, Williams P (1988) Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs): 2. Preliminary analysis of subspecies within B. rapa (syn. campestris) and B. oleracea. Theor Appl Genet 76:593–600
    • (1988) Theor Appl Genet , vol.76 , pp. 593-600
    • Song, K.1    Osborn, T.2    Williams, P.3
  • 54
    • 34249960658 scopus 로고
    • Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs): 3. Genomic relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris)
    • COI: 1:STN:280:DC%2BC2c7mt1ajuw%3D%3D, PID: 24226454
    • Song K, Osborn T, Williams P (1990) Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs): 3. Genomic relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris). Theor Appl Genet 79:497–506
    • (1990) Theor Appl Genet , vol.79 , pp. 497-506
    • Song, K.1    Osborn, T.2    Williams, P.3
  • 55
    • 23144444421 scopus 로고    scopus 로고
    • AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
    • COI: 1:CAS:528:DC%2BD2MXlslyqt78%3D, PID: 15980513
    • Stanke M, Morgenstern B (2005) AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acid Res 33:W465–W467
    • (2005) Nucleic Acid Res , vol.33 , pp. W465-W467
    • Stanke, M.1    Morgenstern, B.2
  • 56
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • COI: 1:CAS:528:DC%2BD2sXhtFKrs7%2FP, PID: 17654362
    • Talavera G, Castresana J (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56:564–577
    • (2007) Syst Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 57
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: molecular evolutionary genetics analysis version 6.0
    • COI: 1:CAS:528:DC%2BC3sXhvVKhurzP, PID: 24132122
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 58
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815
    • (2000) Nature , vol.408 , pp. 796-815
  • 59
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • The Brassica rapa Genome Sequencing Project Consortium (2011) The genome of the mesopolyploid crop species Brassica rapa. Nat Genet 43:1035–1040
    • (2011) Nat Genet , vol.43 , pp. 1035-1040
  • 60
    • 0028050863 scopus 로고
    • Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species
    • COI: 1:STN:280:DC%2BC2c7isFSitQ%3D%3D, PID: 24186250
    • Thormann CE, Ferreira ME, Camargo LE, Tivang JG, Osborn TC (1994) Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species. Theor Appl Genet 88:973–980
    • (1994) Theor Appl Genet , vol.88 , pp. 973-980
    • Thormann, C.E.1    Ferreira, M.E.2    Camargo, L.E.3    Tivang, J.G.4    Osborn, T.C.5
  • 62
    • 84864372943 scopus 로고    scopus 로고
    • Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish
    • COI: 1:CAS:528:DC%2BC38XhtVelu7nL, PID: 22476438
    • Wang S, Wang X, He Q, Liu X, Xu W, Li L, Gao J, Wang F (2012a) Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep 31:1437–1447
    • (2012) Plant Cell Rep , vol.31 , pp. 1437-1447
    • Wang, S.1    Wang, X.2    He, Q.3    Liu, X.4    Xu, W.5    Li, L.6    Gao, J.7    Wang, F.8
  • 64
    • 84888251195 scopus 로고    scopus 로고
    • De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism
    • COI: 1:CAS:528:DC%2BC3sXhvV2nu7vL
    • Wang Y, Pan Y, Liu Z, Zhu X, Zhai L, Xu L, Yu R, Gong Y, Liu L (2013a) De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism. BMC Genom 14(1):836
    • (2013) BMC Genom , vol.14 , Issue.1 , pp. 836
    • Wang, Y.1    Pan, Y.2    Liu, Z.3    Zhu, X.4    Zhai, L.5    Xu, L.6    Yu, R.7    Gong, Y.8    Liu, L.9
  • 65
    • 84879261150 scopus 로고    scopus 로고
    • Transcriptome profiling of radish (Raphanus sativus L.) root and identification of genes involved in response to lead (Pb) stress with next generation sequencing
    • COI: 1:CAS:528:DC%2BC3sXhtVOhs7jF, PID: 23840502
    • Wang Y, Xu L, Chen Y, Shen H, Gong Y, Limera C, Liu L (2013b) Transcriptome profiling of radish (Raphanus sativus L.) root and identification of genes involved in response to lead (Pb) stress with next generation sequencing. PLoS ONE 8:e66539
    • (2013) PLoS ONE , vol.8 , pp. e66539
    • Wang, Y.1    Xu, L.2    Chen, Y.3    Shen, H.4    Gong, Y.5    Limera, C.6    Liu, L.7
  • 66
    • 33745902198 scopus 로고    scopus 로고
    • Brassicaceae: chromosome number index and database on CD-Rom
    • Warwick S, Al-Shehbaz I (2006) Brassicaceae: chromosome number index and database on CD-Rom. Pl Syst Evol 259:237–248
    • (2006) Pl Syst Evol , vol.259 , pp. 237-248
    • Warwick, S.1    Al-Shehbaz, I.2
  • 67
    • 0002427832 scopus 로고
    • Molecular systematics of Brassica and allied genera (Subtribe Brassicinae, Brassiceae)—chloroplast genome and cytodeme congruence
    • COI: 1:CAS:528:DyaK3MXmsV2htrk%3D, PID: 24212864
    • Warwick S, Black L (1991) Molecular systematics of Brassica and allied genera (Subtribe Brassicinae, Brassiceae)—chloroplast genome and cytodeme congruence. Theor Appl Genet 82:81–92
    • (1991) Theor Appl Genet , vol.82 , pp. 81-92
    • Warwick, S.1    Black, L.2
  • 68
    • 0028323692 scopus 로고
    • Evaluation of the subtribes Moricandiinae, Savignyinae, Vellinae and Zillinae (Brassicaceae, tribe Brassiceae) using chloroplast DNA restriction site variation
    • Warwick S, Black L (1994) Evaluation of the subtribes Moricandiinae, Savignyinae, Vellinae and Zillinae (Brassicaceae, tribe Brassiceae) using chloroplast DNA restriction site variation. Can J Bot 72:1692–1701
    • (1994) Can J Bot , vol.72 , pp. 1692-1701
    • Warwick, S.1    Black, L.2
  • 69
    • 0030967445 scopus 로고    scopus 로고
    • Phylogenetic implications of chloroplast DNA restriction site variation in subtribes Raphaninae and Cakilinae (Brassicaceae, tribe Brassiceae)
    • Warwick S, Black L (1997) Phylogenetic implications of chloroplast DNA restriction site variation in subtribes Raphaninae and Cakilinae (Brassicaceae, tribe Brassiceae). Can J Bot 75:960–973
    • (1997) Can J Bot , vol.75 , pp. 960-973
    • Warwick, S.1    Black, L.2
  • 70
    • 23044466474 scopus 로고    scopus 로고
    • Phylogeny of tribe Brassiceae (Brassicaceae) based on chloroplast restriction site polymorphisms and nuclear ribosomal internal transcribed spacer and chloroplast trnL intron sequences
    • COI: 1:CAS:528:DC%2BD2MXntVGrtro%3D
    • Warwick S, Sauder C (2005) Phylogeny of tribe Brassiceae (Brassicaceae) based on chloroplast restriction site polymorphisms and nuclear ribosomal internal transcribed spacer and chloroplast trnL intron sequences. Can J Bot 83:467–483
    • (2005) Can J Bot , vol.83 , pp. 467-483
    • Warwick, S.1    Sauder, C.2
  • 71
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • COI: 1:CAS:528:DC%2BC3cXjvFyktLs%3D, PID: 20147302
    • Wu T, Nacu N (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26:873–881
    • (2010) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.1    Nacu, N.2
  • 72
    • 84946400129 scopus 로고    scopus 로고
    • Transcriptome-based gene profiling provides novel insights into the characteristics of radish root response to Cr stress with next-generation sequencing
    • PID: 25873924
    • Xie Y, Ye S, Wang Y, Xu L, Zhu X, Yang J, Feng H, Yu R, Karanja B, Gong Y, Liu L (2015) Transcriptome-based gene profiling provides novel insights into the characteristics of radish root response to Cr stress with next-generation sequencing. Front Plant Sci 6:202
    • (2015) Front Plant Sci , vol.6 , pp. 202
    • Xie, Y.1    Ye, S.2    Wang, Y.3    Xu, L.4    Zhu, X.5    Yang, J.6    Feng, H.7    Yu, R.8    Karanja, B.9    Gong, Y.10    Liu, L.11
  • 73
    • 84927740782 scopus 로고    scopus 로고
    • Complete mitochondrial genome sequence of black mustard (Brassica nigra; BB) and comparison with Brassica oleracea (CC) and Brassica carinata (BBCC)
    • COI: 1:CAS:528:DC%2BC2MXksVaiu70%3D, PID: 25767903
    • Yamagishi H, Tanaka Y, Terachi T (2014) Complete mitochondrial genome sequence of black mustard (Brassica nigra; BB) and comparison with Brassica oleracea (CC) and Brassica carinata (BBCC). Genome 57:577–582
    • (2014) Genome , vol.57 , pp. 577-582
    • Yamagishi, H.1    Tanaka, Y.2    Terachi, T.3
  • 74
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • COI: 1:CAS:528:DC%2BD2sXpsVGrs7c%3D, PID: 17483113
    • Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586–1591
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 75
    • 0031925861 scopus 로고    scopus 로고
    • Phylogenetic position of Raphanus in relation to Brassica species based on 5S rRNA spacer sequence data
    • COI: 1:CAS:528:DyaK1cXlt1Wgsrg%3D
    • Yang YW, Tseng PF, Tai PY, Chang CJ (1998) Phylogenetic position of Raphanus in relation to Brassica species based on 5S rRNA spacer sequence data. Bot Bull Acad Sin 39:153–160
    • (1998) Bot Bull Acad Sin , vol.39 , pp. 153-160
    • Yang, Y.W.1    Tseng, P.F.2    Tai, P.Y.3    Chang, C.J.4
  • 76
    • 0033257252 scopus 로고    scopus 로고
    • Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA
    • COI: 1:CAS:528:DC%2BD3cXosVyl, PID: 10620403
    • Yang YW, Lai KN, Tai PY, Ma DP, Li WH (1999) Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA. Mol Phylogenet Evol 13:455–462
    • (1999) Mol Phylogenet Evol , vol.13 , pp. 455-462
    • Yang, Y.W.1    Lai, K.N.2    Tai, P.Y.3    Ma, D.P.4    Li, W.H.5
  • 77
    • 0035983979 scopus 로고    scopus 로고
    • A study of the phylogeny of Brassica rapa, B. nigra, Raphanus sativus, and their related genera using noncoding regions of chloroplast DNA
    • COI: 1:CAS:528:DC%2BD38XksFOntr4%3D, PID: 12069556
    • Yang Y, Tai P, Chen Y, Li W (2002) A study of the phylogeny of Brassica rapa, B. nigra, Raphanus sativus, and their related genera using noncoding regions of chloroplast DNA. Mol Phylogenet Evol 23:268–275
    • (2002) Mol Phylogenet Evol , vol.23 , pp. 268-275
    • Yang, Y.1    Tai, P.2    Chen, Y.3    Li, W.4
  • 78
    • 84881167398 scopus 로고    scopus 로고
    • RCircos: ans R package for Circos 2D track plots
    • PID: 23937229
    • Zhang H, Meltzer P, Davis S (2013) RCircos: ans R package for Circos 2D track plots. BMC Bioinformatics 14:244
    • (2013) BMC Bioinformatics , vol.14 , pp. 244
    • Zhang, H.1    Meltzer, P.2    Davis, S.3


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