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Volumn 58, Issue 1, 2008, Pages 15-22

Genetic diversity of cultivated and wild radish and phylogenetic relationships among Raphanus and Brassica species revealed by the analysis of trnK/matK sequence

Author keywords

Brassica; Nucleotide diversity; Origin of cultivated radish; Phylogenetic relationships; Raphanus; trnK matK

Indexed keywords

BRASSICA; BRASSICA BARRELIERI; RAPHANUS; RAPHANUS SATIVUS; RAPHANUS SATIVUS VAR. SATIVUS;

EID: 42049117340     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.15     Document Type: Article
Times cited : (28)

References (47)
  • 1
    • 0347390590 scopus 로고
    • The diversity and a genealogy of Japanese wild radishes
    • in Japanese
    • Aoba, T. (1989) The diversity and a genealogy of Japanese wild radishes. Noko no Gijutu 12: 92-114 (in Japanese).
    • (1989) Noko no Gijutu , vol.12 , pp. 92-114
    • Aoba, T.1
  • 2
    • 33645536890 scopus 로고    scopus 로고
    • Brassicaceae phylogeny and trichome evolution
    • Beilstein, M.A., I.A. Al-Shehbaz and E.A. Kellogg (2006) Brassicaceae phylogeny and trichome evolution. Am. J. Bot. 93: 607-619.
    • (2006) Am. J. Bot , vol.93 , pp. 607-619
    • Beilstein, M.A.1    Al-Shehbaz, I.A.2    Kellogg, E.A.3
  • 4
    • 1842635201 scopus 로고    scopus 로고
    • Comparative analysis of chloroplast DNA variability in wild and cultivated Citrullus species
    • Dane, F., P. Lang and R. Bakhiyarova (2004) Comparative analysis of chloroplast DNA variability in wild and cultivated Citrullus species. Theor. Appl. Genet. 108: 958-966.
    • (2004) Theor. Appl. Genet , vol.108 , pp. 958-966
    • Dane, F.1    Lang, P.2    Bakhiyarova, R.3
  • 5
    • 42049089758 scopus 로고    scopus 로고
    • de Candolle, A. (1883) Origine des plantes cultivées, Paris. (Origin of Cultivated Plants.) Japanese translation edition, Kamo, G. (1941) Kaizosha, Tokyo, Japan.
    • de Candolle, A. (1883) Origine des plantes cultivées, Paris. (Origin of Cultivated Plants.) Japanese translation edition, Kamo, G. (1941) Kaizosha, Tokyo, Japan.
  • 6
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 7
    • 0002355469 scopus 로고    scopus 로고
    • Taxonomy
    • Gómez-Campo, C, ed, Elsevier, Amsterdam. The Netherlands
    • Gómez-Campo, C. (1999) Taxonomy. In "Biology of Brassica Coenospecies" Gómez-Campo, C. (ed.), Elsevier, Amsterdam. The Netherlands.
    • (1999) Biology of Brassica Coenospecies
    • Gómez-Campo, C.1
  • 8
    • 0003054873 scopus 로고
    • A contribution to the cyto-taxonomy of Brassica (Cruciferae) and its allies
    • Harberd, D.J. (1972) A contribution to the cyto-taxonomy of Brassica (Cruciferae) and its allies. Bot. J. Lin. Soc. 65: 1-23.
    • (1972) Bot. J. Lin. Soc , vol.65 , pp. 1-23
    • Harberd, D.J.1
  • 9
    • 12744270207 scopus 로고
    • The history of the radish
    • Henslow, G. (1898) The history of the radish. Gardeners Chronicke 23: 389.
    • (1898) Gardeners Chronicke , vol.23 , pp. 389
    • Henslow, G.1
  • 10
    • 0028005898 scopus 로고
    • matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str
    • Johnson, L.A. and D.E. Soltis (1994) matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str. Syst. Bot. 19: 143-156.
    • (1994) Syst. Bot , vol.19 , pp. 143-156
    • Johnson, L.A.1    Soltis, D.E.2
  • 11
    • 0000890115 scopus 로고
    • Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences
    • Johnson, L.A. and D.E. Soltis (1995) Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. Mo. Bot. Gard. 82: 149-171.
    • (1995) Ann. Mo. Bot. Gard , vol.82 , pp. 149-171
    • Johnson, L.A.1    Soltis, D.E.2
  • 12
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 13
    • 42049086323 scopus 로고    scopus 로고
    • Kitamura, S. (1958) Varieties of radish and their transition. In Japanese Radish Nishiyama, I. (ed.), Jap. Sci. Soc. Press, Tokyo. p. 1-19 (in Japanese).
    • Kitamura, S. (1958) Varieties of radish and their transition. In "Japanese Radish" Nishiyama, I. (ed.), Jap. Sci. Soc. Press, Tokyo. p. 1-19 (in Japanese).
  • 14
    • 0005663614 scopus 로고
    • Naturliche Einkreuzung von Hederich (Raphanus raphanistrum L.) in Radies (Raphanus sativus var. radicula DC.) und das Verhalten von Knollenform und Farbe in den nachfolgenden F-und R-Generationen
    • in German
    • Kobabe, G. (1959) Naturliche Einkreuzung von Hederich (Raphanus raphanistrum L.) in Radies (Raphanus sativus var. radicula DC.) und das Verhalten von Knollenform und Farbe in den nachfolgenden F-und R-Generationen. Zeitschrift für Pflanzenzüchtung 41: 1-10 (in German).
    • (1959) Zeitschrift für Pflanzenzüchtung , vol.41 , pp. 1-10
    • Kobabe, G.1
  • 15
    • 0020383277 scopus 로고
    • Genetic divergence in four species of the genus Raphanus: Implications for the ancestry of the domestic radish R. sativus
    • Lewis-Jones, L.J., J.P. Thorpe and G.P. Wallis (1982) Genetic divergence in four species of the genus Raphanus: Implications for the ancestry of the domestic radish R. sativus. J. Linn. Soc. 18: 35-48.
    • (1982) J. Linn. Soc , vol.18 , pp. 35-48
    • Lewis-Jones, L.J.1    Thorpe, J.P.2    Wallis, G.P.3
  • 16
    • 42049089155 scopus 로고    scopus 로고
    • Origin and diffusion of cultivated radish revealed by SSR variation of chloroplast genome
    • Suppl. 1, 2, 1005 in Japanese
    • Lü, N., K. Yamane and O. Ohnishi (2005) Origin and diffusion of cultivated radish revealed by SSR variation of chloroplast genome. Breed. Sci. 7 (Suppl. 1, 2): 1005 (in Japanese).
    • (2005) Breed. Sci , vol.7
    • Lü, N.1    Yamane, K.2    Ohnishi, O.3
  • 19
  • 20
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei, M. and W.-H. Li (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76: 5269-5273.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.-H.2
  • 21
    • 0033765836 scopus 로고    scopus 로고
    • Intra- and interspecific phylogeny of wild Fagopyrum (Polygonaceae) species based on nucleotide sequences of noncoding regions in chloroplast DNA
    • Ohsako, T. and O. Ohnishi (2000) Intra- and interspecific phylogeny of wild Fagopyrum (Polygonaceae) species based on nucleotide sequences of noncoding regions in chloroplast DNA. Am. J. Bot. 87: 573-582.
    • (2000) Am. J. Bot , vol.87 , pp. 573-582
    • Ohsako, T.1    Ohnishi, O.2
  • 22
    • 0035066564 scopus 로고    scopus 로고
    • Nucleotide sequence variation of the chloroplast trnK/matK region in two wild Fagopyrum (Polygonaceae) species, F. leptopodum and F. statice
    • Ohsako, T. and O. Ohnishi (2001) Nucleotide sequence variation of the chloroplast trnK/matK region in two wild Fagopyrum (Polygonaceae) species, F. leptopodum and F. statice. Genes Genet. Syst. 76: 39-46.
    • (2001) Genes Genet. Syst , vol.76 , pp. 39-46
    • Ohsako, T.1    Ohnishi, O.2
  • 23
    • 0028005619 scopus 로고
    • Chloroplast DNA systematics: A review of methods and data analysis
    • Olmstead, R.G. and J.D. Palmer (1994) Chloroplast DNA systematics: A review of methods and data analysis. Am. J. Bot. 81: 1205-1224.
    • (1994) Am. J. Bot , vol.81 , pp. 1205-1224
    • Olmstead, R.G.1    Palmer, J.D.2
  • 24
    • 0024259002 scopus 로고
    • Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence
    • Palmer, J.D. and L.A. Herbon (1988) Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence. J. Mol. Evol. 28: 87-97.
    • (1988) J. Mol. Evol , vol.28 , pp. 87-97
    • Palmer, J.D.1    Herbon, L.A.2
  • 25
    • 0001737017 scopus 로고
    • Phylogeny of Brassica and allied genera based on variation in chloroplast and mitochondrial DNA patterns: Molecular and taxonomic classifications are incongruous
    • Pradhan, S.K., S. Prakash, A. Mukhopadhyay and D. Pental (1992) Phylogeny of Brassica and allied genera based on variation in chloroplast and mitochondrial DNA patterns: molecular and taxonomic classifications are incongruous. Theor. Appl. Genet. 85: 331-340.
    • (1992) Theor. Appl. Genet , vol.85 , pp. 331-340
    • Pradhan, S.K.1    Prakash, S.2    Mukhopadhyay, A.3    Pental, D.4
  • 26
    • 0030960257 scopus 로고    scopus 로고
    • Rozas, J. and R. Rozas (1997) DnaSP version 2.0: A novel software package for extensive molecular population genetics analysis. Comput. Appl. Biosci. 13: 307-311
    • Rozas, J. and R. Rozas (1997) DnaSP version 2.0: A novel software package for extensive molecular population genetics analysis. Comput. Appl. Biosci. 13: 307-311.
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and M. Nei (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 405-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 405-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 42049122823 scopus 로고
    • The wild radish from the sea coast of Japan in connection with the problem of the origin of the cultivated forms belonging to the genus Raphanus
    • Leningrad
    • Shinskaya, E.N. (1931) The wild radish from the sea coast of Japan in connection with the problem of the origin of the cultivated forms belonging to the genus Raphanus. Trudy po prikladnoi botanike, genetike i seletskii (Leningrad) 26: 1-58.
    • (1931) Trudy po prikladnoi botanike, genetike i seletskii , vol.26 , pp. 1-58
    • Shinskaya, E.N.1
  • 30
    • 0030460477 scopus 로고    scopus 로고
    • Discordance between ITS and chloroplast topologies in the Boykinia group (Saxifragaceae)
    • Soltis, D.E., L.A. Johnson and C. Looney (1996) Discordance between ITS and chloroplast topologies in the Boykinia group (Saxifragaceae). Syst. Bot. 21: 169-186.
    • (1996) Syst. Bot , vol.21 , pp. 169-186
    • Soltis, D.E.1    Johnson, L.A.2    Looney, C.3
  • 31
    • 34249960658 scopus 로고
    • Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) 3. Genome relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris)
    • Song, K.M., T.C. Osborn and P.H. Williams (1990) Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) 3. Genome relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris). Theor. Appl. Genet. 79: 497-506.
    • (1990) Theor. Appl. Genet , vol.79 , pp. 497-506
    • Song, K.M.1    Osborn, T.C.2    Williams, P.H.3
  • 32
    • 0028002198 scopus 로고
    • Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK
    • Steele, K.P. and R. Vilgalys (1994) Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK. Syst. Bot. 19: 126-142.
    • (1994) Syst. Bot , vol.19 , pp. 126-142
    • Steele, K.P.1    Vilgalys, R.2
  • 33
    • 42049099924 scopus 로고    scopus 로고
    • Swofford, D.L, 1999) PAUP*: Phylogenetic analysis using parsimony * and other methods, Version 4.0b4a. Sinauer, Sunderland, Mass. USA
    • Swofford, D.L. (1999) PAUP*: Phylogenetic analysis using parsimony (* and other methods). Version 4.0b4a. Sinauer, Sunderland, Mass. USA.
  • 34
    • 42049113205 scopus 로고    scopus 로고
    • Swofford, D.L, 2002) PAUP*. Phylogenetic analysis using parsimony * and other methods, Version 4.0. Sinauer, Sunderland, Mass. USA
    • Swofford, D.L. (2002) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4.0. Sinauer, Sunderland, Mass. USA.
  • 35
    • 42049105561 scopus 로고    scopus 로고
    • U, N. (1935) Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Jpn. J. Bot. 7: 389-452.
    • U, N. (1935) Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Jpn. J. Bot. 7: 389-452.
  • 36
    • 0002427832 scopus 로고
    • Molecular systematics of Brassica and allied genera (Subtribe Brassicinae, Brassiceae) - chloroplast genome and cytodeme congruence
    • Warwick, S.I. and L.D. Black (1991) Molecular systematics of Brassica and allied genera (Subtribe Brassicinae, Brassiceae) - chloroplast genome and cytodeme congruence. Theor. Appl. Genet. 82: 81-92.
    • (1991) Theor. Appl. Genet , vol.82 , pp. 81-92
    • Warwick, S.I.1    Black, L.D.2
  • 37
    • 0000881353 scopus 로고
    • Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae): Chloroplast DNA variation in the genus Diplotaxis
    • Warwick, S.I., L.D. Black and I. Aguinagalde (1992) Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae): chloroplast DNA variation in the genus Diplotaxis. Theor. Appl. Genet. 83: 839-850.
    • (1992) Theor. Appl. Genet , vol.83 , pp. 839-850
    • Warwick, S.I.1    Black, L.D.2    Aguinagalde, I.3
  • 38
    • 0000582431 scopus 로고
    • Molecular relationships in subtribe Brassicinae (Cruciferae, tribe Brassiceae)
    • Warwick, S.I. and L.D. Black (1993) Molecular relationships in subtribe Brassicinae (Cruciferae, tribe Brassiceae). Can. J. Bot. 71: 906-918.
    • (1993) Can. J. Bot , vol.71 , pp. 906-918
    • Warwick, S.I.1    Black, L.D.2
  • 39
    • 0030967445 scopus 로고    scopus 로고
    • Phylogenetic implications of chloroplast DNA restriction site variation in subtribes Raphaninae and Cakilinae (Brassicaceae, tribe Brassiceae)
    • Warwick, S.I. and L.D. Black (1997) Phylogenetic implications of chloroplast DNA restriction site variation in subtribes Raphaninae and Cakilinae (Brassicaceae, tribe Brassiceae). Can. J. Bot. 75: 960-973.
    • (1997) Can. J. Bot , vol.75 , pp. 960-973
    • Warwick, S.I.1    Black, L.D.2
  • 40
    • 0036942644 scopus 로고    scopus 로고
    • Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: Evidence for multiple origins of cultivated soybean
    • Xu, D., J. Abe, J. Gai and Y. Shimamoto (2002) Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: evidence for multiple origins of cultivated soybean. Theor. Appl. Genet. 105: 1432-2242.
    • (2002) Theor. Appl. Genet , vol.105 , pp. 1432-2242
    • Xu, D.1    Abe, J.2    Gai, J.3    Shimamoto, Y.4
  • 41
    • 2342588751 scopus 로고    scopus 로고
    • Assessment of cytoplasmic polymorphisms by PCR-RFLP of the mitochondrial orfB region in wild and cultivated radishes (Raphanus)
    • Yamagishi, H. (2004) Assessment of cytoplasmic polymorphisms by PCR-RFLP of the mitochondrial orfB region in wild and cultivated radishes (Raphanus). Plant Breed. 123: 141-144.
    • (2004) Plant Breed , vol.123 , pp. 141-144
    • Yamagishi, H.1
  • 42
    • 0000973810 scopus 로고    scopus 로고
    • Genetic relationships among Japanese wild radishes (Raphanus sativus f. raphanistroides Makino), cultivated radishes and R. raphanistrum revealed by RAPD analysis
    • Yamagishi, H., M. Tateishi, T. Terachi and S. Murayama (1998) Genetic relationships among Japanese wild radishes (Raphanus sativus f. raphanistroides Makino), cultivated radishes and R. raphanistrum revealed by RAPD analysis. J. Jpn. Soc. Hort. Sci. 67: 526-531.
    • (1998) J. Jpn. Soc. Hort. Sci , vol.67 , pp. 526-531
    • Yamagishi, H.1    Tateishi, M.2    Terachi, T.3    Murayama, S.4
  • 43
    • 0034777783 scopus 로고    scopus 로고
    • Intra- and inter-species variations in the mitochondrial gene orf138 of Ogura-type male-sterile cytoplasm from Raphanus sativus and Raphanus raphanistrum
    • Yamagishi, H. and T. Terachi (2001) Intra- and inter-species variations in the mitochondrial gene orf138 of Ogura-type male-sterile cytoplasm from Raphanus sativus and Raphanus raphanistrum. Theor. Appl. Genet. 103: 725-732.
    • (2001) Theor. Appl. Genet , vol.103 , pp. 725-732
    • Yamagishi, H.1    Terachi, T.2
  • 44
    • 0037309031 scopus 로고    scopus 로고
    • Multiple origins of cultivated radishes as evidenced by a comparison of the structural variations in mitochondrial DNA of Raphanus
    • Yamagishi, H. and T. Terachi (2003) Multiple origins of cultivated radishes as evidenced by a comparison of the structural variations in mitochondrial DNA of Raphanus. Genome 46: 89-94.
    • (2003) Genome , vol.46 , pp. 89-94
    • Yamagishi, H.1    Terachi, T.2
  • 45
    • 0842323991 scopus 로고    scopus 로고
    • Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae)
    • Yamane, K., Y. Yasui and O. Ohnishi (2003) Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae). Am. J. Bot. 90: 339-346.
    • (2003) Am. J. Bot , vol.90 , pp. 339-346
    • Yamane, K.1    Yasui, Y.2    Ohnishi, O.3
  • 46
    • 12744274680 scopus 로고    scopus 로고
    • Chloroplast DNA variations of cultivated radish and its wild relatives
    • Yamane, K., N. Lü and O. Ohnishi (2005) Chloroplast DNA variations of cultivated radish and its wild relatives. Plant Sci. 168: 627-634.
    • (2005) Plant Sci , vol.168 , pp. 627-634
    • Yamane, K.1    Lü, N.2    Ohnishi, O.3
  • 47
    • 0031925861 scopus 로고    scopus 로고
    • Phylogenetic position of Raphanus in relation to Brassica species based on 5S rRNA spacer sequence data
    • Yang, Y.W., P.F. Tseng, P.Y. Tai and C.J. Chang (1998) Phylogenetic position of Raphanus in relation to Brassica species based on 5S rRNA spacer sequence data. Bot. Bull. Acad. Sin. 39: 153-160.
    • (1998) Bot. Bull. Acad. Sin , vol.39 , pp. 153-160
    • Yang, Y.W.1    Tseng, P.F.2    Tai, P.Y.3    Chang, C.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.