RNA-seq based SNPs for mapping in Brassica juncea (AABB): Synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns

BMC Genomics

Volumn 15, Issue 1, 2014, Pages

  Paritosh, Kumar ^a   Gupta, Vibha ^a   Yadava, Satish K ^a   Singh, Priyansha ^a   Pradhan, Akshay K ^a   Pental, Deepak ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

Brassica species; Comparative genomics; Evolution; Linkage map; RNA seq; SNP

Indexed keywords

TRANSCRIPTOME; RNA;

ARTICLE; BLOCK FRAGMENTATION PATTERN; BRASSICA JUNCEA; BRASSICA NIGRA; BRASSICA RAPA; CONTIG MAPPING; CONTROLLED STUDY; GENE REARRANGEMENT; GENETIC ASSOCIATION; GENETIC PARAMETERS; GENETIC VARIABILITY; GENOME ANALYSIS; PLANT GENOME; PROTEIN DATABASE; RNA SEQUENCE; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SYNTENY; CHEMISTRY; CHROMOSOME MAP; COMPARATIVE GENOMIC HYBRIDIZATION; EVOLUTION; GENETIC LINKAGE; GENETICS; GENOTYPE; METABOLISM; MUSTARD;

BRASSICA; BRASSICA JUNCEA; BRASSICA NIGRA; BRASSICA RAPA; VARUNA;

BIOLOGICAL EVOLUTION; CHROMOSOME MAPPING; COMPARATIVE GENOMIC HYBRIDIZATION; GENETIC LINKAGE; GENOME, PLANT; GENOTYPE; MUSTARD PLANT; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA; SEQUENCE ANALYSIS, RNA; TRANSCRIPTOME;

EID: 84901659525     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-396     Document Type: Article

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